ViewGene
Locus Name:
GeneID:
Location:

GeneID:841
TrivialName: PA14_15670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15670
PAO1 Ortholog Locus:PA3768
Sequence Length:1392
Protein Length:463
Start: 1332509
Stop: 1333900
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07155.1|AE004795_7 (AE004795) probable metallo-oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 462/463 (99%), Positives = 463/463 (100%)
Sequence:
ATGACATTTACCCGTAGACAAGTGCTCGGCGGCCTCGCCGGGCTGGCGGTAGTCGGCCTCGGCGCCGGCGGC
GCGCGCCTCTGGCTGGCGCGTCCGCAGGTGGCGCAGGAGTACGACTACGAACTGATCGCCGCGCCGCTGGAT
CTGGAGATCGTCCCGGGCTTCAGCAGTCCGGCGCTGGCCTATGGCGGCCAGTGCCCCGGCGTGGAGTTGCGG
GCGAAGCAGGGCGAGTGGCTGCGGGTGCGCTTCACCAACAGGCTGGACGAACCGACCACCATCCACTGGCAC
GGCATCCGCCTACCGATCGAGATGGACGGCGTACCGTACATTTCCCAGCCGCCGGTGCAGCCGGGCGAGAGC
TTCATCTACCAGTTCAAGACCCAGGACGCCGGCAGCTACTGGTACCACCCGCACCTGATGAGCAGCGAGCAG
CTCGGCCGCGGACTGGTCGGCCCGCTGATCATCGAGGAGCGCGAACCCACCGGGTTCCGCCACGAGAAGGTT
CTCTGCCTGAAGACCTGGCACGTGGACGAGCAGGGCGCCTTCACCCCCTTCAGCGTGCCGCGCCAGGCCGCG
CGAGAAGGCACCCGCGGGCGCTATTCGACGATCAACGGCAAGCATGTGCCGACCATCGACCTGCCGGCCGGG
CAGATCGTCCGGGTGCGCCTGCTGAACGTCGACAACACCGTCACCTACCGTCTCAACCTGCCCAACGGCGAG
GCGAGGATCTATGCCATCGATGGCCATCCGGTGGAACCGCGCGGATTCGAGGGGCAGTACTGGATCGGCCCC
GGGATGCGCCTGGAGCTGGCGCTGAAGGTGCCGGAAGCGGGCACCGAGCTGTCCCTGCGCGACGGGCCGGTA
CGCCTGGCGACGATCCGCAGTGTGGCCAGCGCCGAGGCTCCTGCCGGCGACTGGCCGAAGCCGTTGCCGGCG
AATCCGGTGAGCGAACCGGACCTGGCCAATGCCGAGAAGATCGGTTTCCGTTTCGAGTGGGTCGGGGCGATG
TCCGATACCAGCGGCAAGAATCCCTATCCGTCGTTCTGGCAGATCAACGGCAAGGCCTGGGAAGGCGGCGAG
GAGCACAAGCACAACGCGCCGCCGCTGGCCAAGCTCAAGGAAGGCCAGAGCTACATCTTCGAGCTGCGCAAC
ATGGCGCAGTACCAGCACCCGATCCACCTGCATGGGATGGCCTTCAAGGTACTGGATTCGGATCGCCGGGAG
ATCATCCCGTACTTCACCGACACCTACCTGCTGGGCAAGAACGAGACCGCCCGCGTCGCGCTGGTGGCGGAC
AATCCGGGCCTGTGGATGTTCCACTGCCACGTCATCGACCATATGGAGACCGGCCTGATGGGGACCATCGCG
GTCGGCGAGGCCTGGTGCGGGTGA
Translation:
MTFTRRQVLGGLAGLAVVGLGAGGARLWLARPQVAQEYDYELIAAPLDLEIVPGFSSPALAYGGQCPGVELR
AKQGEWLRVRFTNRLDEPTTIHWHGIRLPIEMDGVPYISQPPVQPGESFIYQFKTQDAGSYWYHPHLMSSEQ
LGRGLVGPLIIEEREPTGFRHEKVLCLKTWHVDEQGAFTPFSVPRQAAREGTRGRYSTINGKHVPTIDLPAG
QIVRVRLLNVDNTVTYRLNLPNGEARIYAIDGHPVEPRGFEGQYWIGPGMRLELALKVPEAGTELSLRDGPV
RLATIRSVASAEAPAGDWPKPLPANPVSEPDLANAEKIGFRFEWVGAMSDTSGKNPYPSFWQINGKAWEGGE
EHKHNAPPLAKLKEGQSYIFELRNMAQYQHPIHLHGMAFKVLDSDRREIIPYFTDTYLLGKNETARVALVAD
NPGLWMFHCHVIDHMETGLMGTIAVGEAWCG*
AnnotationID:850GeneID:841
AnnotatorUID: diggins
Modification Date/Time: 2004-09-11 18:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative multicopper oxidase
Cell Localization:()
Synonyms:cumA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2132,KOG1263
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54977.1| (AE016861) multicopper oxidase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 457

 Score =  657 bits (1696), Expect = 0.0
 Identities = 315/458 (68%), Positives = 376/458 (82%), Gaps = 3/458 (0%)

>gb|AAD24211.1|AF086638_1 (AF086638) CumA precursor [Pseudomonas putida GB-1]
          Length = 460

 Score =  623 bits (1607), Expect = e-178
 Identities = 305/461 (66%), Positives = 367/461 (79%), Gaps = 6/461 (1%)

>gb|AAL04030.1|AF326412_1 (AF326412) Mn(II)-oxidation-associated multicopper oxidase
           [Pseudomonas sp. SI85-2B]
          Length = 351

 Score =  533 bits (1373), Expect = e-151
 Identities = 250/354 (70%), Positives = 297/354 (83%), Gaps = 3/354 (0%)






 
Structural Features:
COG2132, SufI, Putative multicopper oxidases 
[Secondary metabolites biosynthesis, transport, and catabolism]

KOG1263, Multicopper oxidases 
[Secondary metabolites biosynthesis, transport and catabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:1685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18827




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31789




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:841_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:841
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1514
                           PA3768_tr
                           translation of PA3768
                           463
                           99.78
                           99.99
                           0
                           2497.0
     

     
     
54766
                           gb|AAG07155.1|AE004795_7
                           (AE004795) probable metallo-oxidoreductase [Pseudomonas aeruginosa PAO1]
                           463
                           99.78
                           99.99
                           0
                           2497.0
     

     
     
54767
                           gb|AAO54977.1|
                           (AE016861) multicopper oxidase [Pseudomonas syringae pv. tomato str. DC3000]
                           464
                           67.88
                           81.03
                           8
                           1702.0
     

     
     
54768
                           gb|AAD24211.1|AF086638_1
                           (AF086638) CumA precursor [Pseudomonas putida GB-1]
                           467
                           65.31
                           78.58
                           11
                           1616.0
     

     
     
54769
                           gb|AAN66659.1|AE016294_1
                           (AE016777) multicopper oxidase [Pseudomonas putida KT2440]
                           478
                           64.43
                           77.19
                           25
                           1613.0
     

     






      

          
GC ORFID: 43843How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3768Glimmer Score: 

          
Start: 3621428Stop: 3620037

          
Length: 1392


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3768 translation of PA3768Homolog Bit Score 966.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4545 (ORF: BLASTX 657.0), t_PA3768 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACATTTACCCGTAGACAAGTGCTCGGCGGCCTCGCCGGGCTGGCGGTAGTCGGCCTCGGCGCCGGCGGC 
GCGCGCCTCTGGCTGGCGCGTCCGCAGGTGGCGCAGGAGTACGACTACGAACTGATCGCCGCGCCGCTGGAT 
CTGGAGATCGTCCCGGGCTTCAGCAGTCCGGCGCTGGCCTATGGCGGCCAGTGCCCCGGCGTGGAGTTGCGG 
GCGAAGCAGGGCGAGTGGCTGCGGGTGCGCTTCACCAACAGGCTGGACGAACCGACCACCATCCACTGGCAC 
GGCATCCGCCTACCGATCGAGATGGACGGCGTACCGTACATTTCCCAGCCGCCGGTGCAGCCGGGCGAGAGC 
TTCATCTACCAGTTCAAGACCCAGGACGCCGGCAGCTACTGGTACCACCCGCACCTGATGAGCAGCGAGCAG 
CTCGGCCGCGGACTGGTCGGCCCGCTGATCATCGAGGAGCGCGAACCCACCGGGTTCCGCCACGAGAAGGTT 
CTCTGCCTGAAGACCTGGCACGTGGACGAGCAGGGCGCCTTCACCCCCTTCAGCGTGCCGCGCCAGGCCGCG 
CGAGAAGGCACCCGCGGGCGCTATTCGACGATCAACGGCAAGCATGTGCCGACCATCGACCTGCCGGCCGGG 
CAGATCGTCCGGGTGCGCCTGCTGAACGTCGACAACACCGTCACCTACCGTCTCAACCTGCCCAACGGCGAG 
GCGAGGATCTATGCCATCGATGGCCATCCGGTGGAACCGCGCGGATTCGAGGGGCAGTACTGGATCGGCCCC 
GGGATGCGCCTGGAGCTGGCGCTGAAGGTGCCGGAAGCGGGCACCGAGCTGTCCCTGCGCGACGGGCCGGTA 
CGCCTGGCGACGATCCGCAGTGTGGCCAGCGCCGAGGCTCCTGCCGGCGACTGGCCGAAGCCGTTGCCGGCG 
AATCCGGTGAGCGAACCGGACCTGGCCAATGCCGAGAAGATCGGTTTCCGTTTCGAGTGGGTCGGGGCGATG 
TCCGATACCAGCGGCAAGAATCCCTATCCGTCGTTCTGGCAGATCAACGGCAAGGCCTGGGAAGGCGGCGAG 
GAGCACAAGCACAACGCGCCGCCGCTGGCCAAGCTCAAGGAAGGCCAGAGCTACATCTTCGAGCTGCGCAAC 
ATGGCGCAGTACCAGCACCCGATCCACCTGCATGGGATGGCCTTCAAGGTACTGGATTCGGATCGCCGGGAG 
ATCATCCCGTACTTCACCGACACCTACCTGCTGGGCAAGAACGAGACCGCCCGCGTCGCGCTGGTGGCGGAC 
AATCCGGGCCTGTGGATGTTCCACTGCCACGTCATCGACCATATGGAGACCGGCCTGATGGGGACCATCGCG 
GTCGGCGAGGCCTGGTGCGGGTGA