ViewGene

Locus Name:
GeneID:
Location:

GeneID:840
TrivialName: PA14_23520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23520
PAO1 Ortholog Locus:PA3137
Sequence Length:1500
Protein Length:499
Start: 2049243
Stop: 2047744
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06525.1|AE004737_11 (AE004737) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 498/499 (99%), Positives = 498/499 (99%)
Sequence:
GTGCTCAGCGCCATGCTCGGCGCATTCATGGCGGTGCTCGACATCCAGATCACCAACTCCTCACTGAAGGAC
ATCCAGGGCGCGCTGGCGGCGACCCTCGAGGAAGGCTCGTGGATCTCCACCTCCTATCTGGTGGCGGAGATC
ATCATGATCCCGATGACCGCCTGGCTGGTGCAGCTGCTCTCGGCACGGCGCCTGGCGGTGATGATCTCGGTG
GGCTTCCTGGTGTCCTCGCTGCTCTGCTCGTTCGCCTGGAACCTGGAAAGCATGATCGTGTTCCGCGCCATG
CAGGGTTTCACCGGCGGCGCGCTGATTCCGCTGGCGTTCACCCTGGCCCTGGTCAAGTTGCCGGAACACCAC
CGTCCGAAGGGCATGGCGCTGTTCGCCATCACCGCCACCTTCGCGCCCTCCATCGGACCGACCCTGGGAGGC
TGGCTGACGGAAAACTTCGGCTGGGAATACATCTTCTATATCAACGTGCCGCCGGGCCTGTTGATGATCGCC
GGGCTGCTCTACGGCCTGGAGAAAAAGGCGCCGCACTGGGAACTGCTGAAGAGTACCGACTACGCCGGCATC
GTCACCCTCGGCATCGGCCTGGGCTGCCTGCAGGTCTTCCTCGAGGAAGGTCACCGCAAGGACTGGCTGGAG
TCGCAACTGATCGTCAGCCTCGGCAGCGTCGCCCTGTTCAGCCTGGTCCTGTTCGTCATCCTGCAACTGTCG
CGGCCGAACCCGCTGATCGACCTGGGCATCCTGCGCAACCGCAACTTCGGCCTCGCGAGCATTTCCAGCATC
GGCCTGGGCATGGGTCTGTACGGCTCGATCTACGTACTGCCGCTGTACCTGGCACAAATCCAGGGCTACAAC
GCCATGCAGATCGGCGAGGTGATCATGTGGATGGGCATTCCCCAGCTGTTCCTGATCCCGCTGGTCCCGAAG
TTGATGAAGCTGGTCTCGCCGCGCCTGCTCTGCGCCGCCGGCTTCGGCCTGTTCGGCCTTGCCAGCTTCTTC
TCCGGGGTGCTCAACCCGGACTTCGCCGGACCGCAGTTCAACCAGATCCAGCTACTGCGCGCCCTCGGCCAG
CCGATGATCATGGTGACCATTTCGCTGATCGCCACCGCCTACCTGCAGCCACAGGATGCCGGCTCGGCCTCG
AGCCTGTTCAACATCCTGCGCAACCTCGGCGGCGCCATCGGCATCGCCCTGCTCGCGACCCTGCTCGACAGT
CGCGCCAAGGTGTACTTCGACTATCTGCGCGAAGCCCTGGTGCCGACCAACCCGCAGGTCGACGAACGCCTC
GCGCAACTCGCCGCGCAACTGGGCAGCCAGCAGGCGGCGCTGGGCAAACTCAGCGAGATCACCCACCAGCAG
GCGATGATCATGGCCTACAACGATGCTTTCCATGTCATCGGCATGGTGCTCGCAGTGAGCATGCTCGCGGTG
CTGCTGACCCGCTCGCTGCCGGCCGGCATCGGCACCCGCGCCGACGCCGGGGCTCACTGA
Translation:
MLSAMLGAFMAVLDIQITNSSLKDIQGALAATLEEGSWISTSYLVAEIIMIPMTAWLVQLLSARRLAVMISV
GFLVSSLLCSFAWNLESMIVFRAMQGFTGGALIPLAFTLALVKLPEHHRPKGMALFAITATFAPSIGPTLGG
WLTENFGWEYIFYINVPPGLLMIAGLLYGLEKKAPHWELLKSTDYAGIVTLGIGLGCLQVFLEEGHRKDWLE
SQLIVSLGSVALFSLVLFVILQLSRPNPLIDLGILRNRNFGLASISSIGLGMGLYGSIYVLPLYLAQIQGYN
AMQIGEVIMWMGIPQLFLIPLVPKLMKLVSPRLLCAAGFGLFGLASFFSGVLNPDFAGPQFNQIQLLRALGQ
PMIMVTISLIATAYLQPQDAGSASSLFNILRNLGGAIGIALLATLLDSRAKVYFDYLREALVPTNPQVDERL
AQLAAQLGSQQAALGKLSEITHQQAMIMAYNDAFHVIGMVLAVSMLAVLLTRSLPAGIGTRADAGAH*
AnnotationID:849GeneID:840
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 09:09:39
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA3137
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative drug resistance transporter
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67590.1|AE016388_10 (AE016781) drug resistance transporter, EmrB/QacA family
           [Pseudomonas putida KT2440]
          Length = 516

 Score =  833 bits (2153), Expect = 0.0
 Identities = 415/490 (84%), Positives = 460/490 (93%)

>gb|AAF67160.1|AF233286_4 (AF233286) putative transport protein RmrB [Rhizobium etli]
          Length = 527

 Score =  438 bits (1127), Expect = e-122
 Identities = 225/508 (44%), Positives = 337/508 (66%), Gaps = 13/508 (2%)

>gb|AAN67681.1|AE016398_5 (AE016781) drug resistance transporter, EmrB/QacA family
           [Pseudomonas putida KT2440]
          Length = 527

 Score =  384 bits (987), Expect = e-106
 Identities = 201/486 (41%), Positives = 311/486 (63%), Gaps = 1/486 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:14237
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18825
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32385
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:840_cdd.html
URL:
Homologs By Global Alignment
Gene ID:840

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1512 PA3137_tr translation of PA3137 499 99.79 99.79 0 2496.0
54754 gb|AAG06525.1|AE004737_11 (AE004737) probable MFS transporter [Pseudomonas aeruginosa PAO1] 499 99.59 99.79 0 2493.0
54755 gb|AAN67590.1|AE016388_10 (AE016781) drug resistance transporter, EmrB/QacA family [Pseudomonas putida KT2440] 520 80.76 89.23 25 2155.0
54756 gb|AAN53606.1|AE015500_5 (AE015500) drug resistance transporter, EmrB/QacA family protein [Shewanella oneidensis MR-1] 546 48.90 66.84 54 1355.0
54759 dbj|BAC53224.1| (AP005964) blr7959 [Bradyrhizobium japonicum USDA 110] 508 44.29 64.56 14 1136.0
GC ORFID: 43842How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3137Glimmer Score:
Start: 2904688Stop: 2906187
Length: 1500
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3137 translation of PA3137Homolog Bit Score 966.0
Other Homologs: t_PA1236 (ORF: BLASTX 395.0), t_PA3137 (ORF: GLIMMER)
GC ORF Sequence
GTGCTCAGCGCCATGCTCGGCGCATTCATGGCGGTGCTCGACATCCAGATCACCAACTCCTCACTGAAGGAC
ATCCAGGGCGCGCTGGCGGCGACCCTCGAGGAAGGCTCGTGGATCTCCACCTCCTATCTGGTGGCGGAGATC
ATCATGATCCCGATGACCGCCTGGCTGGTGCAGCTGCTCTCGGCACGGCGCCTGGCGGTGATGATCTCGGTG
GGCTTCCTGGTGTCCTCGCTGCTCTGCTCGTTCGCCTGGAACCTGGAAAGCATGATCGTGTTCCGCGCCATG
CAGGGTTTCACCGGCGGCGCGCTGATTCCGCTGGCGTTCACCCTGGCCCTGGTCAAGTTGCCGGAACACCAC
CGTCCGAAGGGCATGGCGCTGTTCGCCATCACCGCCACCTTCGCGCCCTCCATCGGACCGACCCTGGGAGGC
TGGCTGACGGAAAACTTCGGCTGGGAATACATCTTCTATATCAACGTGCCGCCGGGCCTGTTGATGATCGCC
GGGCTGCTCTACGGCCTGGAGAAAAAGGCGCCGCACTGGGAACTGCTGAAGAGTACCGACTACGCCGGCATC
GTCACCCTCGGCATCGGCCTGGGCTGCCTGCAGGTCTTCCTCGAGGAAGGTCACCGCAAGGACTGGCTGGAG
TCGCAACTGATCGTCAGCCTCGGCAGCGTCGCCCTGTTCAGCCTGGTCCTGTTCGTCATCCTGCAACTGTCG
CGGCCGAACCCGCTGATCGACCTGGGCATCCTGCGCAACCGCAACTTCGGCCTCGCGAGCATTTCCAGCATC
GGCCTGGGCATGGGTCTGTACGGCTCGATCTACGTACTGCCGCTGTACCTGGCACAAATCCAGGGCTACAAC
GCCATGCAGATCGGCGAGGTGATCATGTGGATGGGCATTCCCCAGCTGTTCCTGATCCCGCTGGTCCCGAAG
TTGATGAAGCTGGTCTCGCCGCGCCTGCTCTGCGCCGCCGGCTTCGGCCTGTTCGGCCTTGCCAGCTTCTTC
TCCGGGGTGCTCAACCCGGACTTCGCCGGACCGCAGTTCAACCAGATCCAGCTACTGCGCGCCCTCGGCCAG
CCGATGATCATGGTGACCATTTCGCTGATCGCCACCGCCTACCTGCAGCCACAGGATGCCGGCTCGGCCTCG
AGCCTGTTCAACATCCTGCGCAACCTCGGCGGCGCCATCGGCATCGCCCTGCTCGCGACCCTGCTCGACAGT
CGCGCCAAGGTGTACTTCGACTATCTGCGCGAAGCCCTGGTGCCGACCAACCCGCAGGTCGACGAACGCCTC
GCGCAACTCGCCGCGCAACTGGGCAGCCAGCAGGCGGCGCTGGGCAAACTCAGCGAGATCACCCACCAGCAG
GCGATGATCATGGCCTACAACGATGCTTTCCATGTCATCGGCATGGTGCTCGCAGTGAGCATGCTCGCGGTG
CTGCTGACCCGCTCGCTGCCGGCCGGCATCGGCACCCGCGCCGACGCCGGGGCTCACTGA