ViewGene

Locus Name:
GeneID:
Location:

GeneID:84
TrivialName: PA14_44010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44010
PAO1 Ortholog Locus:PA1585
Sequence Length:2832
Protein Length:943
Start: 3919265
Stop: 3916434
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04974.1|AE004586_12 (AE004586) 2-oxoglutarate dehydrogenase (E1 subunit) [Pseudomonas aeruginosa PAO1]
Identities = 943/943 (100%), Positives = 943/943 (100%)
Sequence:
ATGCACGAAAGCGTAATGCAGCGGATGTGGAACAGTGCCCATCTATCCGGTGGTAACGCTGCCTACGTCGAA
GAGCTCTACGAGCTCTACCTGCACGACCCTAACGCTGTGCCAGAAGAGTGGCGCACGTATTTCCAGAAGCTT
CCCGCCGATGGCAATCCCGCCCCCGACGTCTCGCACTCCACAGTGCGCGATCATTTCGTCTTGCTGGCCAAG
AACCAGCGCCGTGCCCAGCCGGTTTCCGCCGGTAGCGTGAGCAGCGAGCACGAGAAGAAACAGGTCGAAGTC
CTTCGTCTCATTCACGCTTACCGTCTCCGCGGCCACCAGGCTTCCACCCTCGACCCGCTCGGCCTGTGGCAG
CGTCCCGCGCCTGCCGACCTGTCGATCGACCACTACGGTCTGACGGGTGCCGATCTGGATACCACTTTCCGC
ACCGGTGAGCTTTACATCGGCAAGGAAGAGGCGACCCTGCGTGAAATCGTCGACAGCCTGAAGAGCACCTAT
TGCGGTACCTTCGGCGCCGAGTTCATGCACATCGTCGATTCCGAGCAGCGCAAGTGGTTCCTCCAGCGCCTG
GAAAGCGTGCGTGGCCGTCCCGGCTTCTCCGCCGAGGCGCGTGCGCACCTGCTCGAGCGCCTGACCGCGGCC
GAAGGCCTGGAGAAGTACCTGGGCACCAAGTACCCGGGCACCAAGCGTTTCGGCCTGGAAGGCGGCGAAAGC
CTGATCCCGATGGTCGACGAGATCATCCAGCGCTGCGGTTCCTACGGCGCCAAGGAAATCGTAATCGGCATG
GCCCACCGCGGTCGCCTGAACGTCCTGGTCAACACCCTGGGCAAGAACCCGCGCGACCTGTTCGACGAGTTC
GAAGGCAAGAAGATCGTCGAGCTGGGCTCCGGTGACGTGAAGTACCACCAGGGCTTCTCCTCGAACGTGATG
ACCAGCGGCGGCGAAGTCCACCTGGCGCTGGCGTTCAACCCGTCCCACCTGGAGATCGTTTCCCCGGTGGTC
GAGGGTTCCGTTCGTGCCCGCCAGGACCGCCGCAAGGACAGCTCCGGCGACAAGGTGGTACCGATTTCCATC
CACGGCGATGCCGCCTTCGCGGGGCAGGGCGTGGTCATGGAAACCTTCCAGATGTCGCAGACCCGCGCCTAC
AAGACCGGTGGCACCATCCACCTGGTGATCAACAACCAGGTCGGCTTCACCACCAGCCGCCAGGACGATGCG
CGTTCCACCGAGTACGCCACCGACGTGGCGAAGATGATTCAGGCGCCGATCTTCCACGTCAACGGCGACGAT
CCCGAAGCCGTGCTGTTCGTCACCCAGCTGGCCGTCGACTATCGCATGCAGTTCAAGCGTGACGTGGTCATC
GACCTGGTCTGCTACCGTCGCCGCGGCCACAACGAGGCGGACGAGCCGAGCGGCACCCAGCCGCTGATGTAC
CAGCAGATCGCCAAGCAGCGTACTACCCGCGAGCTGTACGCCGACGCGCTGGTGAACGCCGGCGTGCTCAGC
GCCGAGCAGGTTCAGTCGAAGATCGACGACTACCGCGATGCCCTGGACAACGGCCTGCACGTGGTGAAGAGC
CTGGTCAAGGAGCCCAACAAGGAACTGTTCGTCGACTGGCGTCCGTACCTGGGCCATGCCTGGACCGCGCGT
CACGACACCCGCTTCGACCTGAAGACCCTGCAGGAACTGTCCAGCAAGATGCTGGAAGTGCCGGAAGGCTTC
GTGGTTCAGCGCCAGGTTTCGAAGATCTACGAAGATCGCCAGAAGATGGCGGCCGGTGGCCTGCCGATCAAC
TGGGGCTTCGCCGAGACCCTGGCCTACGCGACCCTGCTGTTCGAAGGCCATCCGGTACGGATGACCGGCCAG
GACGTCGGCCGTGGCACCTTCTCGCACCGTCACGCGGTGCTGCACAACCAGAAGGATGACTCGGTCTACGTA
CCGCTGGCCAATCTGTTCGACGGCCAGCCGCGCCTGGATATCTACGATTCGTTCCTTTCGGAAGAGGCCGTG
CTGGCGTTCGAATACGGTTTCGCCACCACCACGCCGAATTCGCTGGTGATCTGGGAAGCCCAGTTCGGCGAC
TTCGCCAACGGCGCCCAGGTGGTCATCGACCAGTTCATCACCAGTGGCGAAAGCAAATGGGGCCGACTCTGC
GGCCTGACCATGCTGCTGCCGCACGGCTATGAGGGGCAGGGTCCGGAGCACTCCTCCGCGCGCCTGGAGCGC
TACCTGCAGCTCTGCGCCGAGCAGAACATCCAGGTCTGCGTGCCGACCACCCCGGCTCAGGTCTACCACATG
CTCCGCCGTCAGGTGATCCGCCCGCTGCGCAAGCCGCTGGTGGTGATGACGCCGAAGTCCCTGCTGCGTCAC
AAGCTCGCCATCTCGACCCTGGAAGATCTGGCCAACGGTTCCTTCCAGACCGTGATCCCGGAAATCGACAGC
CTGGATCCGAAGAAGGTCGACCGCGTCGTGCTGTGCAGCGGCAAGGTGTACTACGACCTGCTGGAGAAGCGT
CGCGCGGAAGGCCGCGAAGATACCGCGATCGTCCGTATCGAGCAGCTGTATCCGTTCCCGGAAGACGACCTG
GCGGAAGTTCTGGCTCCCTACAAGAACCTCAAGCACATCGTCTGGTGCCAGGAAGAGCCGATGAACCAGGGC
GCCTGGTTCTGCAGCCAGCATCACATGCGTCGTGTCATCGCCGCGCACAAGAAGGGCCTCAATCTCGAGTAC
GCCGGCCGCGAAGGCTCCGCTGCTCCGGCTTGCGGCTACGCCTCGATGCACGCCGAGCAGCAGGAAAAACTG
CTGCAAGACGCCTTTACTGTTTAA
Translation:
MHESVMQRMWNSAHLSGGNAAYVEELYELYLHDPNAVPEEWRTYFQKLPADGNPAPDVSHSTVRDHFVLLAK
NQRRAQPVSAGSVSSEHEKKQVEVLRLIHAYRLRGHQASTLDPLGLWQRPAPADLSIDHYGLTGADLDTTFR
TGELYIGKEEATLREIVDSLKSTYCGTFGAEFMHIVDSEQRKWFLQRLESVRGRPGFSAEARAHLLERLTAA
EGLEKYLGTKYPGTKRFGLEGGESLIPMVDEIIQRCGSYGAKEIVIGMAHRGRLNVLVNTLGKNPRDLFDEF
EGKKIVELGSGDVKYHQGFSSNVMTSGGEVHLALAFNPSHLEIVSPVVEGSVRARQDRRKDSSGDKVVPISI
HGDAAFAGQGVVMETFQMSQTRAYKTGGTIHLVINNQVGFTTSRQDDARSTEYATDVAKMIQAPIFHVNGDD
PEAVLFVTQLAVDYRMQFKRDVVIDLVCYRRRGHNEADEPSGTQPLMYQQIAKQRTTRELYADALVNAGVLS
AEQVQSKIDDYRDALDNGLHVVKSLVKEPNKELFVDWRPYLGHAWTARHDTRFDLKTLQELSSKMLEVPEGF
VVQRQVSKIYEDRQKMAAGGLPINWGFAETLAYATLLFEGHPVRMTGQDVGRGTFSHRHAVLHNQKDDSVYV
PLANLFDGQPRLDIYDSFLSEEAVLAFEYGFATTTPNSLVIWEAQFGDFANGAQVVIDQFITSGESKWGRLC
GLTMLLPHGYEGQGPEHSSARLERYLQLCAEQNIQVCVPTTPAQVYHMLRRQVIRPLRKPLVVMTPKSLLRH
KLAISTLEDLANGSFQTVIPEIDSLDPKKVDRVVLCSGKVYYDLLEKRRAEGREDTAIVRIEQLYPFPEDDL
AEVLAPYKNLKHIVWCQEEPMNQGAWFCSQHHMRRVIAAHKKGLNLEYAGREGSAAPACGYASMHAEQQEKL
LQDAFTV*
AnnotationID:94GeneID:84
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 06:06:29
Gene Name:sucA
Confidence Code:2
GeneProduct:2-oxoglutarate dehydrogenase (E1 subunit)
Cell Localization:()
Synonyms:kgdA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:alpha-ketoglutarate dehydrogenase
Functional Category Confidence Code:5
COGs:COG0567
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:1.2.4.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69770.1|AE016613_5 (AE016789) 2-oxoglutarate dehydrogenase, E1 component [Pseudomonas
           putida KT2440]
          Length = 943

 Score = 1701 bits (4406), Expect = 0.0
 Identities = 821/943 (87%), Positives = 884/943 (93%)

>gb|AAO55715.1| (AE016863) 2-oxoglutarate dehydrogenase, E1 component [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 943

 Score = 1694 bits (4387), Expect = 0.0
 Identities = 813/943 (86%), Positives = 882/943 (93%)

>emb|CAA36680.1| (X52433) 2-oxoglutarate dehydrogenase [Azotobacter vinelandii]
          Length = 943

 Score = 1647 bits (4265), Expect = 0.0
 Identities = 799/943 (84%), Positives = 866/943 (91%)
Structural Features:
COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, 
and related enzymes 
[Energy production and conversion]
CD-Length = 906 residues, 100.0% aligned
Score = 1265 bits (3274), Expect = 0.0
Identities = 575/938 (61%), Positives = 688/938 (73%), Gaps = 32/938 (3%)
Genomic Context:
Comment:
ReferenceID:171
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17313
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36508
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:84_cdd.html
URL:
ReferenceID:36576
Author/Investigator(s): Darlison MG, Spencer ME, Guest JR.
Title: Nucleotide sequence of the sucA gene encoding the 2-oxoglutarate dehydrogenase of Escherichia coli K12.
PubMed: 6376123
MedLine:
Source:
Eur J Biochem. 1984 Jun 1;141(2):351-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6376123
Homologs By Global Alignment
Gene ID:84

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
162 PA1585_tr translation of PA1585 943 99.99 99.99 0 4931.0
13898 gb|AAG04974.1|AE004586_12 (AE004586) 2-oxoglutarate dehydrogenase (E1 subunit) [Pseudomonas aeruginosa PAO1] 943 99.99 99.99 0 4931.0
13899 gb|AAN69770.1|AE016613_5 (AE016789) 2-oxoglutarate dehydrogenase, E1 component [Pseudomonas putida KT2440] 943 87.06 93.74 0 4406.0
13900 gb|AAO55715.1| (AE016863) 2-oxoglutarate dehydrogenase, E1 component [Pseudomonas syringae pv. tomato str. DC3000] 943 86.21 93.53 0 4387.0
13901 gb|AAC23516.1| (AF068740) alpha-ketoglutarate dehydrogenase; E1 [Pseudomonas putida] 943 86.21 93.10 0 4365.0
GC ORFID: 43086How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1585Glimmer Score:
Start: 1034644Stop: 1037475
Length: 2832
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1585 translation of PA1585Homolog Bit Score 1904.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene997 (ORF: BLASTX 678.0), t_PA1585 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGAAAGCGTAATGCAGCGGATGTGGAACAGTGCCCATCTATCCGGTGGTAACGCTGCCTACGTCGAA
GAGCTCTACGAGCTCTACCTGCACGACCCTAACGCTGTGCCAGAAGAGTGGCGCACGTATTTCCAGAAGCTT
CCCGCCGATGGCAATCCCGCCCCCGACGTCTCGCACTCCACAGTGCGCGATCATTTCGTCTTGCTGGCCAAG
AACCAGCGCCGTGCCCAGCCGGTTTCCGCCGGTAGCGTGAGCAGCGAGCACGAGAAGAAACAGGTCGAAGTC
CTTCGTCTCATTCACGCTTACCGTCTCCGCGGCCACCAGGCTTCCACCCTCGACCCGCTCGGCCTGTGGCAG
CGTCCCGCGCCTGCCGACCTGTCGATCGACCACTACGGTCTGACGGGTGCCGATCTGGATACCACTTTCCGC
ACCGGTGAGCTTTACATCGGCAAGGAAGAGGCGACCCTGCGTGAAATCGTCGACAGCCTGAAGAGCACCTAT
TGCGGTACCTTCGGCGCCGAGTTCATGCACATCGTCGATTCCGAGCAGCGCAAGTGGTTCCTCCAGCGCCTG
GAAAGCGTGCGTGGCCGTCCCGGCTTCTCCGCCGAGGCGCGTGCGCACCTGCTCGAGCGCCTGACCGCGGCC
GAAGGCCTGGAGAAGTACCTGGGCACCAAGTACCCGGGCACCAAGCGTTTCGGCCTGGAAGGCGGCGAAAGC
CTGATCCCGATGGTCGACGAGATCATCCAGCGCTGCGGTTCCTACGGCGCCAAGGAAATCGTAATCGGCATG
GCCCACCGCGGTCGCCTGAACGTCCTGGTCAACACCCTGGGCAAGAACCCGCGCGACCTGTTCGACGAGTTC
GAAGGCAAGAAGATCGTCGAGCTGGGCTCCGGTGACGTGAAGTACCACCAGGGCTTCTCCTCGAACGTGATG
ACCAGCGGCGGCGAAGTCCACCTGGCGCTGGCGTTCAACCCGTCCCACCTGGAGATCGTTTCCCCGGTGGTC
GAGGGTTCCGTTCGTGCCCGCCAGGACCGCCGCAAGGACAGCTCCGGCGACAAGGTGGTACCGATTTCCATC
CACGGCGATGCCGCCTTCGCGGGGCAGGGCGTGGTCATGGAAACCTTCCAGATGTCGCAGACCCGCGCCTAC
AAGACCGGTGGCACCATCCACCTGGTGATCAACAACCAGGTCGGCTTCACCACCAGCCGCCAGGACGATGCG
CGTTCCACCGAGTACGCCACCGACGTGGCGAAGATGATTCAGGCGCCGATCTTCCACGTCAACGGCGACGAT
CCCGAAGCCGTGCTGTTCGTCACCCAGCTGGCCGTCGACTATCGCATGCAGTTCAAGCGTGACGTGGTCATC
GACCTGGTCTGCTACCGTCGCCGCGGCCACAACGAGGCGGACGAGCCGAGCGGCACCCAGCCGCTGATGTAC
CAGCAGATCGCCAAGCAGCGTACTACCCGCGAGCTGTACGCCGACGCGCTGGTGAACGCCGGCGTGCTCAGC
GCCGAGCAGGTTCAGTCGAAGATCGACGACTACCGCGATGCCCTGGACAACGGCCTGCACGTGGTGAAGAGC
CTGGTCAAGGAGCCCAACAAGGAACTGTTCGTCGACTGGCGTCCGTACCTGGGCCATGCCTGGACCGCGCGT
CACGACACCCGCTTCGACCTGAAGACCCTGCAGGAACTGTCCAGCAAGATGCTGGAAGTGCCGGAAGGCTTC
GTGGTTCAGCGCCAGGTTTCGAAGATCTACGAAGATCGCCAGAAGATGGCGGCCGGTGGCCTGCCGATCAAC
TGGGGCTTCGCCGAGACCCTGGCCTACGCGACCCTGCTGTTCGAAGGCCATCCGGTACGGATGACCGGCCAG
GACGTCGGCCGTGGCACCTTCTCGCACCGTCACGCGGTGCTGCACAACCAGAAGGATGACTCGGTCTACGTA
CCGCTGGCCAATCTGTTCGACGGCCAGCCGCGCCTGGATATCTACGATTCGTTCCTTTCGGAAGAGGCCGTG
CTGGCGTTCGAATACGGTTTCGCCACCACCACGCCGAATTCGCTGGTGATCTGGGAAGCCCAGTTCGGCGAC
TTCGCCAACGGCGCCCAGGTGGTCATCGACCAGTTCATCACCAGTGGCGAAAGCAAATGGGGCCGACTCTGC
GGCCTGACCATGCTGCTGCCGCACGGCTATGAGGGGCAGGGTCCGGAGCACTCCTCCGCGCGCCTGGAGCGC
TACCTGCAGCTCTGCGCCGAGCAGAACATCCAGGTCTGCGTGCCGACCACCCCGGCTCAGGTCTACCACATG
CTCCGCCGTCAGGTGATCCGCCCGCTGCGCAAGCCGCTGGTGGTGATGACGCCGAAGTCCCTGCTGCGTCAC
AAGCTCGCCATCTCGACCCTGGAAGATCTGGCCAACGGTTCCTTCCAGACCGTGATCCCGGAAATCGACAGC
CTGGATCCGAAGAAGGTCGACCGCGTCGTGCTGTGCAGCGGCAAGGTGTACTACGACCTGCTGGAGAAGCGT
CGCGCGGAAGGCCGCGAAGATACCGCGATCGTCCGTATCGAGCAGCTGTATCCGTTCCCGGAAGACGACCTG
GCGGAAGTTCTGGCTCCCTACAAGAACCTCAAGCACATCGTCTGGTGCCAGGAAGAGCCGATGAACCAGGGC
GCCTGGTTCTGCAGCCAGCATCACATGCGTCGTGTCATCGCCGCGCACAAGAAGGGCCTCAATCTCGAGTAC
GCCGGCCGCGAAGGCTCCGCTGCTCCGGCTTGCGGCTACGCCTCGATGCACGCCGAGCAGCAGGAAAAACTG
CTGCAAGACGCCTTTACTGTTTAA