ViewGene
Locus Name:
GeneID:
Location:

GeneID:836
TrivialName: PA14_32300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32300
PAO1 Ortholog Locus:PA2502
Sequence Length:1500
Protein Length:499
Start: 2806858
Stop: 2808357
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05890.1|AE004677_7 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 488/499 (97%), Positives = 492/499 (98%)
Sequence:
ATGGGCCAGCAGGAGTTGGCGTTCGGCGGGGGAGAGTTCCATTCTCTGTGGTCCTGTCGATTCGGGGCGGCC
ACTCTAGCACGGCGAGGGTGCGCGTTCCGCAACGCCTTGGCTATCATGCGCGGCTTTCCATCCGCCCTGGCC
GGAGTCCGTCGAACCATGCACACCTTGCAGCAACTGCGCAGCGGCGAACTGGCCGGCGCCACGCGCCTGGAC
CTGTCCTGCGGCCTGCGCGAGTTCCCCCGGGAAATCTTCGAACTGGCCGACTCCCTGGAGGTGCTCAACCTC
AGCGGCAACGCCCTGGACAGCCTGCCGGACGACCTCGGCCGGCTGCAtcGTCTCAAGGTGCTGTTCTGTTCC
GCCAACGACttcgCCgaATTGCCGGCGGCGGTgGgcgacTGTCCGgcggtgAGCATGGTCGgcTTCAAGTCC
AACCGCAtcgagCGGGTGCCGGCCGCGGCCCTGCCGCCGGCGTTGCGCTGGCTGATCCTCACCGACAACCGG
ATTGCCACGCTGCCCGAGGAACTGGGTCGCCGGCCGTTGCAGAAGCTGATGCTGGCCGGCAACCGCCTGGAG
GCCTTGCCCGAGAGCATGGCCGCTTGCGAAGGCCTGGAACTGCTGCGGATCGCCGCCAACCGTTTCCAGCGC
CTGCCGGCCTGGCTGGCGACGCTGCCGCGCCTGGCCTGGCTGGCTTACGCCGGCAACCCGTTGTGCCGCCTG
CCGGCGCTGGCCGACAGCGGCATCGCCGCGCTGGACTGGAGCGAGCTGAGCCTGGAAGGGCTGATCGGCGAA
GGAGCCTCCGGGGTCATCCATCGCGCCGGCTGGCGCCAGCCGGACGGCTCGACGCGCACGGTGGCGCTGAAG
CTGTTCAAGGGCGAAGTGACCAGCGATGGCACCCCTGCCAGCGAGATGGCCGCCTGCCTGGCGGCGGGGCGC
CATGCGCAATTGATCGAGGTGCTCGGCCGGCTCGCCGGGCATCCGCAAGGGCGCGACGGGCTGGTGCTGGAG
CTGCTCGACGGCGCCTATCGCAACCTGGCGGGGCCGCCGAGCCTGGAGTCCTGTACCCGCGACGTCTATCCG
TCGGGACTGCGCTTCGAGCTGGCCACGGCGCTGCGCCTGGCGGCCTCGCTCGCCGGGTTGATGGACCATCTG
CATGGACGCGGCATCAGCCATGGCGACTTCTATGCGCATAACATCCTCTGGCGCGAGGAGGGTGCCTGCCTG
CTCGGCGATTTCGGCGCCGCGTCCTTCCTCCCGGACGACGCCGTGCTCGCCGGCGCCCTGCGGCGCCTGGAA
GTGCGTGCCTTCGCCTGCCTACTGGAGGAGTTGCTCGAGCGCAGTGAGGCGCCGCCGGGGCAGGCCTCGCTA
CGTGCGGCGCTGGTCGAGTTGCAGCGACGTTGCGCGCTGCCACGGGTGAGCGAGCGGCCGGACTTCGGCGAG
ATCCAGGCGATCTTGCGCGACCTTGCCGCTCGCAGCCAGGCGTTTCCTCAAGTTCGATGA
Translation:
MGQQELAFGGGEFHSLWSCRFGAATLARRGCAFRNALAIMRGFPSALAGVRRTMHTLQQLRSGELAGATRLD
LSCGLREFPREIFELADSLEVLNLSGNALDSLPDDLGRLHRLKVLFCSANDFAELPAAVGDCPAVSMVGFKS
NRIERVPAAALPPALRWLILTDNRIATLPEELGRRPLQKLMLAGNRLEALPESMAACEGLELLRIAANRFQR
LPAWLATLPRLAWLAYAGNPLCRLPALADSGIAALDWSELSLEGLIGEGASGVIHRAGWRQPDGSTRTVALK
LFKGEVTSDGTPASEMAACLAAGRHAQLIEVLGRLAGHPQGRDGLVLELLDGAYRNLAGPPSLESCTRDVYP
SGLRFELATALRLAASLAGLMDHLHGRGISHGDFYAHNILWREEGACLLGDFGAASFLPDDAVLAGALRRLE
VRAFACLLEELLERSEAPPGQASLRAALVELQRRCALPRVSERPDFGEIQAILRDLAARSQAFPQVR*
AnnotationID:845GeneID:836
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:17
Gene Name:
Confidence Code:3
GeneProduct:putative kinase
Cell Localization:()
Synonyms:PA2502
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00192,smart00219
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56646.1| (AE016867) protein kinase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 446

 Score =  496 bits (1276), Expect = e-139
 Identities = 262/438 (59%), Positives = 313/438 (71%), Gaps = 5/438 (1%)








 
Structural Features:
cd00192, TyrKc, Tyrosine kinase, catalytic domain. 
CD-Length = 269 residues,  98.9% aligned
Score = 72.9 bits (179), Expect = 8e-14
Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 54/279 (19%)

smart00219, TyrKc, Tyrosine kinase, catalytic domain
CD-Length = 255 residues, 100.0% aligned
Score = 72.5 bits (178), Expect = 1e-13
Identities = 54/268 (20%), Positives = 92/268 (34%), Gaps = 51/268 (19%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18817




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33052




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:836_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:836
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1508
                           PA2502_tr
                           translation of PA2502
                           499
                           97.79
                           98.59
                           0
                           2501.0
     

     
     
54680
                           gb|AAG05890.1|AE004677_7
                           (AE004677) hypothetical protein PA2502 [Pseudomonas aeruginosa PAO1]
                           499
                           97.79
                           98.59
                           0
                           2501.0
     

     
     
54681
                           gb|AAO56646.1|
                           (AE016867) protein kinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           502
                           53.18
                           63.54
                           59
                           1283.0
     

     
     
54682
                           gb|AAN56990.1|AE015832_6
                           (AE015832) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           511
                           41.29
                           55.57
                           76
                           987.0
     

     
     
54683
                           dbj|BAC60248.1|
                           (AP005079) hypothetical protein [Vibrio parahaemolyticus]
                           510
                           37.45
                           51.37
                           107
                           892.0
     

     






      

          
GC ORFID: 43838How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2502Glimmer Score: 

          
Start: 2147066Stop: 2145567

          
Length: 1500


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2502 translation of PA2502Homolog Bit Score 967.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5837 (ORF: BLASTX 504.0), t_PA2502 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCCAGCAGGAGTTGGCGTTCGGCGGGGGAGAGTTCCATTCTCTGTGGTCCTGTCGATTCGGGGCGGCC 
ACTCTAGCACGGCGAGGGTGCGCGTTCCGCAACGCCTTGGCTATCATGCGCGGCTTTCCATCCGCCCTGGCC 
GGAGTCCGTCGAACCATGCACACCTTGCAGCAACTGCGCAGCGGCGAACTGGCCGGCGCCACGCGCCTGGAC 
CTGTCCTGCGGCCTGCGCGAGTTCCCCCGGGAAATCTTCGAACTGGCCGACTCCCTGGAGGTGCTCAACCTC 
AGCGGCAACGCCCTGGACAGCCTGCCGGACGACCTCGGCCGGCTGCAtcGTCTCAAGGTGCTGTTCTGTTCC 
GCCAACGACttcgCCgaATTGCCGGCGGCGGTgGgcgacTGTCCGgcggtgAGCATGGTCGgcTTCAAGTCC 
AACCGCAtcgagCGGGTGCCGGCCGCGGCCCTGCCGCCGGCGTTGCGCTGGCTGATCCTCACCGACAACCGG 
ATTGCCACGCTGCCCGAGGAACTGGGTCGCCGGCCGTTGCAGAAGCTGATGCTGGCCGGCAACCGCCTGGAG 
GCCTTGCCCGAGAGCATGGCCGCTTGCGAAGGCCTGGAACTGCTGCGGATCGCCGCCAACCGTTTCCAGCGC 
CTGCCGGCCTGGCTGGCGACGCTGCCGCGCCTGGCCTGGCTGGCTTACGCCGGCAACCCGTTGTGCCGCCTG 
CCGGCGCTGGCCGACAGCGGCATCGCCGCGCTGGACTGGAGCGAGCTGAGCCTGGAAGGGCTGATCGGCGAA 
GGAGCCTCCGGGGTCATCCATCGCGCCGGCTGGCGCCAGCCGGACGGCTCGACGCGCACGGTGGCGCTGAAG 
CTGTTCAAGGGCGAAGTGACCAGCGATGGCACCCCTGCCAGCGAGATGGCCGCCTGCCTGGCGGCGGGGCGC 
CATGCGCAATTGATCGAGGTGCTCGGCCGGCTCGCCGGGCATCCGCAAGGGCGCGACGGGCTGGTGCTGGAG 
CTGCTCGACGGCGCCTATCGCAACCTGGCGGGGCCGCCGAGCCTGGAGTCCTGTACCCGCGACGTCTATCCG 
TCGGGACTGCGCTTCGAGCTGGCCACGGCGCTGCGCCTGGCGGCCTCGCTCGCCGGGTTGATGGACCATCTG 
CATGGACGCGGCATCAGCCATGGCGACTTCTATGCGCATAACATCCTCTGGCGCGAGGAGGGTGCCTGCCTG 
CTCGGCGATTTCGGCGCCGCGTCCTTCCTCCCGGACGACGCCGTGCTCGCCGGCGCCCTGCGGCGCCTGGAA 
GTGCGTGCCTTCGCCTGCCTACTGGAGGAGTTGCTCGAGCGCAGTGAGGCGCCGCCGGGGCAGGCCTCGCTA 
CGTGCGGCGCTGGTCGAGTTGCAGCGACGTTGCGCGCTGCCACGGGTGAGCGAGCGGCCGGACTTCGGCGAG 
ATCCAGGCGATCTTGCGCGACCTTGCCGCTCGCAGCCAGGCGTTTCCTCAAGTTCGATGA