ViewGene
Locus Name:
GeneID:
Location:

GeneID:835
TrivialName: PA14_48300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48300
PAO1 Ortholog Locus:PA1236
Sequence Length:1512
Protein Length:503
Start: 4296655
Stop: 4298166
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04625.1|AE004553_2 (AE004553) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 502/503 (99%), Positives = 502/503 (99%)
Sequence:
ATGAGCGCTGACGACAAGGTATCGCTGCGTGCCTGGGTCGCCGTCACCGGCGGCCTGTTCGGCTGCTTCATG
GCTGGCATGAACGTGCACGTCACCAGCGCGGCGCTGCCGGAGATAGAAGGCGCGCTGGGAGCCACCTTCGAG
GAGGGCTCGTGGATATCCACCGCCTATCTGGTCGCGGAAATCAGCATGATCCCGCTTACCGCCTGGCTGGTG
GAAGTGTTCTCCTTGCGCCGGGTGATGCTCCTCGGCTCGCTGGTGTTCCTGCTCAGTTCGCTGAGCTGCGCG
CTGGCGCCGAACCTGTCGACGCTGATCCTGATCCGGGTGATCCAGGGGGCTTCGGGGGCGGTGCTGATCCCG
CTGTCGATGCAACTGATCCTCACCGAGCTGCCGTCCAGCCGGATACCCCTCGGCATGGCGCTGTTCAGCCTT
TCCAACAGCGTGGCCCAGGCCGCCGGCCCGTCGATCGGCGGCTGGCTGGCGGATGCCTATTCCTGGCGCTGG
ATCTTTCTCCTGCAACTGTTGCCGGGGATCGCCCTGCTGGCCGCGGTGGCCTGGTCGATCCGCCCCCGCGAC
GGCGACCGCGAACGCCTGCGCCAGGCCGACTGGCTCGGCATCGGCGCGATGGTCGCCGGCCTCGGCGCGCTG
CAGATCGTGCTGGAGGAAGGTGGCCGCCGCGACTGGTTCGAGTCCGGCTTCATCCGCACCTTCGCCGTCCTC
GCCGTGCTCGCCCTGCTGCTCTTCGTACAGCGCCAACTGTGGGGCGCGCGGCCGTTCATCAACCTGCGCCTG
CTGGGCAGCTACAACTTCGGCGTGTCCAGCCTGGCGATGGCGGTGTTCGGCGCGGCGACCTTCGGCCTGGTG
TTCCTGGTGCCCAACTACCTGTCCCAGTTGCAGGGTTTCAACGCCCGGCAGATCGGCGACAGCCTGATCCTC
TACGGCCTCGTGCAACTGCTCCTGGCGCCGCTGCTGCCGCGCCTGATGCGCTGGCTGAACCCCAAGCTGCTG
GTGGCCGGCGGCTTCGCGATCATGGCCCTGGGCTGCTGGATGGGCGCGCACCTGAACGCCGACGCGGGACGC
AACGTGATCATCCCCTCCATCGTCGTGCGCGGCATCGGCCAGCCGCTGATCATGGTCGCGCTCTCGGTACTG
GCGGTGAAGGGCCTGGACAAGGCCCAGGCCGGCTCGGCCTCGGCGCTGATCTCGATGCTGCGCAACCTCGGC
GGCGCGATCGGCACCGCGCTGTTGACGCAACTGGTCTCGCTGCGCGAGCGCTTCCACTCCGAGCGGATCGGC
GAGACCCTGACGATCTTCGACGGCGCCCTGCAACAGCGCCTGGGCGGTAGCCAGGTGCGGATACAACTGCCG
GAGCAGCAGCAGGCGCTGGCCCTGCTCGACCACGGGGTGCGCCAGCAGGCCTACCTGATGGCCTACTCCGAC
GCCTTCTACCTTTCCTGCGTGGCGCTCCTGGCCTGCGCCCTGGCCTCGCTGATGCTGCGCCAGAAGGACTGA
Translation:
MSADDKVSLRAWVAVTGGLFGCFMAGMNVHVTSAALPEIEGALGATFEEGSWISTAYLVAEISMIPLTAWLV
EVFSLRRVMLLGSLVFLLSSLSCALAPNLSTLILIRVIQGASGAVLIPLSMQLILTELPSSRIPLGMALFSL
SNSVAQAAGPSIGGWLADAYSWRWIFLLQLLPGIALLAAVAWSIRPRDGDRERLRQADWLGIGAMVAGLGAL
QIVLEEGGRRDWFESGFIRTFAVLAVLALLLFVQRQLWGARPFINLRLLGSYNFGVSSLAMAVFGAATFGLV
FLVPNYLSQLQGFNARQIGDSLILYGLVQLLLAPLLPRLMRWLNPKLLVAGGFAIMALGCWMGAHLNADAGR
NVIIPSIVVRGIGQPLIMVALSVLAVKGLDKAQAGSASALISMLRNLGGAIGTALLTQLVSLRERFHSERIG
ETLTIFDGALQQRLGGSQVRIQLPEQQQALALLDHGVRQQAYLMAYSDAFYLSCVALLACALASLMLRQKD*
AnnotationID:844GeneID:835
AnnotatorUID: diggins
Modification Date/Time: 2005-02-03 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative drug resistance transporter
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67681.1|AE016398_5 (AE016781) drug resistance transporter, EmrB/QacA family
           [Pseudomonas putida KT2440]
          Length = 527

 Score =  704 bits (1817), Expect = 0.0
 Identities = 360/502 (71%), Positives = 421/502 (83%), Gaps = 1/502 (0%)

>dbj|BAB48465.1| (AP002996) probable transport protein [Mesorhizobium loti]
          Length = 537

 Score =  410 bits (1055), Expect = e-114
 Identities = 216/508 (42%), Positives = 328/508 (64%), Gaps = 9/508 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18815




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37564




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:835_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:835
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1506
                           PA1236_tr
                           translation of PA1236
                           503
                           99.80
                           99.80
                           0
                           2500.0
     

     
     
54671
                           gb|AAG04625.1|AE004553_2
                           (AE004553) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           503
                           99.80
                           99.80
                           0
                           2500.0
     

     
     
54672
                           gb|AAN67681.1|AE016398_5
                           (AE016781) drug resistance transporter, EmrB/QacA family [Pseudomonas putida KT2440]
                           528
                           68.18
                           79.73
                           26
                           1819.0
     

     
     
54673
                           dbj|BAB48465.1|
                           (AP002996) probable transport protein [Mesorhizobium loti]
                           546
                           40.29
                           61.17
                           52
                           1062.0
     

     
     
54675
                           gb|AAN67590.1|AE016388_10
                           (AE016781) drug resistance transporter, EmrB/QacA family [Pseudomonas putida KT2440]
                           527
                           39.84
                           61.10
                           35
                           1001.0
     

     






      

          
GC ORFID: 43837How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1236Glimmer Score: 

          
Start: 657253Stop: 655742

          
Length: 1512


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1236 translation of PA1236Homolog Bit Score 967.0

          
Other Homologs:  t_PA3137 (ORF: BLASTX 387.0), t_PA1236 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTGACGACAAGGTATCGCTGCGTGCCTGGGTCGCCGTCACCGGCGGCCTGTTCGGCTGCTTCATG 
GCTGGCATGAACGTGCACGTCACCAGCGCGGCGCTGCCGGAGATAGAAGGCGCGCTGGGAGCCACCTTCGAG 
GAGGGCTCGTGGATATCCACCGCCTATCTGGTCGCGGAAATCAGCATGATCCCGCTTACCGCCTGGCTGGTG 
GAAGTGTTCTCCTTGCGCCGGGTGATGCTCCTCGGCTCGCTGGTGTTCCTGCTCAGTTCGCTGAGCTGCGCG 
CTGGCGCCGAACCTGTCGACGCTGATCCTGATCCGGGTGATCCAGGGGGCTTCGGGGGCGGTGCTGATCCCG 
CTGTCGATGCAACTGATCCTCACCGAGCTGCCGTCCAGCCGGATACCCCTCGGCATGGCGCTGTTCAGCCTT 
TCCAACAGCGTGGCCCAGGCCGCCGGCCCGTCGATCGGCGGCTGGCTGGCGGATGCCTATTCCTGGCGCTGG 
ATCTTTCTCCTGCAACTGTTGCCGGGGATCGCCCTGCTGGCCGCGGTGGCCTGGTCGATCCGCCCCCGCGAC 
GGCGACCGCGAACGCCTGCGCCAGGCCGACTGGCTCGGCATCGGCGCGATGGTCGCCGGCCTCGGCGCGCTG 
CAGATCGTGCTGGAGGAAGGTGGCCGCCGCGACTGGTTCGAGTCCGGCTTCATCCGCACCTTCGCCGTCCTC 
GCCGTGCTCGCCCTGCTGCTCTTCGTACAGCGCCAACTGTGGGGCGCGCGGCCGTTCATCAACCTGCGCCTG 
CTGGGCAGCTACAACTTCGGCGTGTCCAGCCTGGCGATGGCGGTGTTCGGCGCGGCGACCTTCGGCCTGGTG 
TTCCTGGTGCCCAACTACCTGTCCCAGTTGCAGGGTTTCAACGCCCGGCAGATCGGCGACAGCCTGATCCTC 
TACGGCCTCGTGCAACTGCTCCTGGCGCCGCTGCTGCCGCGCCTGATGCGCTGGCTGAACCCCAAGCTGCTG 
GTGGCCGGCGGCTTCGCGATCATGGCCCTGGGCTGCTGGATGGGCGCGCACCTGAACGCCGACGCGGGACGC 
AACGTGATCATCCCCTCCATCGTCGTGCGCGGCATCGGCCAGCCGCTGATCATGGTCGCGCTCTCGGTACTG 
GCGGTGAAGGGCCTGGACAAGGCCCAGGCCGGCTCGGCCTCGGCGCTGATCTCGATGCTGCGCAACCTCGGC 
GGCGCGATCGGCACCGCGCTGTTGACGCAACTGGTCTCGCTGCGCGAGCGCTTCCACTCCGAGCGGATCGGC 
GAGACCCTGACGATCTTCGACGGCGCCCTGCAACAGCGCCTGGGCGGTAGCCAGGTGCGGATACAACTGCCG 
GAGCAGCAGCAGGCGCTGGCCCTGCTCGACCACGGGGTGCGCCAGCAGGCCTACCTGATGGCCTACTCCGAC 
GCCTTCTACCTTTCCTGCGTGGCGCTCCTGGCCTGCGCCCTGGCCTCGCTGATGCTGCGCCAGAAGGACTGA