ViewGene

Locus Name:
GeneID:
Location:

GeneID:834
TrivialName: PA14_59530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59530
PAO1 Ortholog Locus:
Sequence Length:1452
Protein Length:483
Start: 5295561
Stop: 5297012
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84189.1| (AY273869) plasmid related protein [Pseudomonas aeruginosa]
Identities = 483/483 (100%), Positives = 483/483 (100%)
Sequence:
ATGGCCCTCATGTTCCCGCGCTTGGCGCGCAACTTTGCACGCAACGGCTACTTCCCTACCGATGAGGTCACC
CTCGAACGCGCTCTGCAGGCCCTCACTCCTGCCCCGTCGGGAAGGATGAGGATCTGTGACCCCTGCGCCGGT
GAGGGTGTTGCCCTGGCTGAGGCAGCACACACCCTCGGCCGCGATCAGGTCCAAGCCCTCGCTGTCGAGTAC
GACCGCGAGCGCGCCGACCATGCCCGAGGATTGCTTGACCGAGTGCTGCACAGTGACCTTTTCGACACCATG
ATCAGCAGGCAGTCGTTCGGACTGCTCTGGCTCAACCCGCCTTATGGCGACCTGGTGGCGGACCACTCCGGT
GCGTCGCAGTACCAGGGCAGCGGCCGCCGGCGTCTGGAGAAAGCGTTCTACCAGCGCTGCCTGCCGTTGCTG
CAGTACGGCGGCGTCATGGTTCTGATTGTTCCTCACTACGTCTTGGACGATGAGCTGACTGGCTGGTTGAGC
AACCACTTCACCGGCCTGCGCATCTACGCAGCCGCGGATCCTACCTTCAAGCAGGTGGTGATCTTCGGCATC
CGGGTCCGTCGGCAGGACCTGGCCCGGGCGGACGCCAATCAGGTGAGGTCTCGCCTGCAGGCGATCGGAGCG
GGCCAGGAAAAGGCCGAGGAAATTCCAGCGGCTTGGCCGTGGGAACCCTACGTGGTTCTGCCGGCCACCAGC
GAGCTGGAGCACTTCTACCGAGTAACCCTGGAGCCGGAGCAGTTCGCCGGTGAAATCCAGCGGCTGCGAGGT
CTCTGGCCTGACTTCAACCTGCACTTCGCGCAAGCGGGGCTGCAGCCGCGCCCACCAGTCCGCGAGCTGTCT
CGCTGGCACCTGGCCCTGGCCCTGGCCGCCGGCGCGATATCTGGCGTCGTGCGATCGAAGTCGGGCCGGATC
CTGGTCGTGAAGGGTGACACCTACAAGGACAAGGTCCGCAAGACCGAATTCACCGAGGACGACGACGGCAAC
ATCACCGAGGTGAGGATCCTCACCGACCGTTTCATCCCGATCATCCGGGCATGGGAAATGACACCCTCCTCG
GTCAATCAGGGCCGCGTGCTGACCATCAGCTCCTCGGCCGCGACCACGGAAGAAGCTGAAGAGCCCCAACCT
GAGCCGGCCCCCGCACCCGCACCGCTGCTGATCAGCCCTGGCCGGGTCGTAATGACCGCAGCCGTGAGCCAC
CTGGTGGAAACCGGTCAACTCAACCCAGCGCCTTTGCTGAAACGCCATCTGGCGGGAGATTGGGGAACGCTG
GACCAGGAAGACTGGAACACCAACCAGAGAGCCCTGAAGTTCGGCGATCGGCTGCTGTCGTCCTACGACATC
GACGCCGGCGACGAATCCAGGCTCTGGATCATCACTGAGGCAGACCGCAGCTCAACCACGCTTTTGCTCCCT
AGCGATTACTGA
Translation:
MALMFPRLARNFARNGYFPTDEVTLERALQALTPAPSGRMRICDPCAGEGVALAEAAHTLGRDQVQALAVEY
DRERADHARGLLDRVLHSDLFDTMISRQSFGLLWLNPPYGDLVADHSGASQYQGSGRRRLEKAFYQRCLPLL
QYGGVMVLIVPHYVLDDELTGWLSNHFTGLRIYAAADPTFKQVVIFGIRVRRQDLARADANQVRSRLQAIGA
GQEKAEEIPAAWPWEPYVVLPATSELEHFYRVTLEPEQFAGEIQRLRGLWPDFNLHFAQAGLQPRPPVRELS
RWHLALALAAGAISGVVRSKSGRILVVKGDTYKDKVRKTEFTEDDDGNITEVRILTDRFIPIIRAWEMTPSS
VNQGRVLTISSSAATTEEAEEPQPEPAPAPAPLLISPGRVVMTAAVSHLVETGQLNPAPLLKRHLAGDWGTL
DQEDWNTNQRALKFGDRLLSSYDIDAGDESRLWIITEADRSSTTLLLPSDY*
AnnotationID:843GeneID:834
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 10:10:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):related to phage, transposon, or plasmid
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM37095.1| (AE011861) plasmid-related protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 369

 Score =  479 bits (1233), Expect = e-134
 Identities = 241/369 (65%), Positives = 274/369 (74%), Gaps = 1/369 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:1671
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18813
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:834

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
54666 gb|AAP84189.1| (AY273869) plasmid related protein [Pseudomonas aeruginosa] 483 99.99 99.99 0 2513.0
54667 emb|CAE92930.1| (AJ617740) hypothetical protein [Pseudomonas putida] 483 50.72 59.62 114 1273.0
54668 gb|AAN62168.1|AF440523_75 (AF440523) conserved hypothetical plasmid protein [Pseudomonas aeruginosa] 483 50.31 59.42 114 1267.0
54670 gb|AAM37095.1| (AE011861) plasmid-related protein [Xanthomonas axonopodis pv. citri str. 306] 483 49.89 56.72 114 1234.0
54669 gb|AAN62304.1|AF440524_91 (AF440524) conserved hypothetical plasmid protein [Pseudomonas aeruginosa] 483 48.24 57.97 114 1234.0
GC ORFID: 43836How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL064Glimmer Score:
Start: 4559240Stop: 4560691
Length: 1452
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL064 483 Homolog: ORF10 / Plasmid-related protein / X. axonopodis pv. citri / 306 (AAM37095) translation of RL064Homolog Bit Score 968.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1626 (ORF: BLASTX 684.0), t_RL064 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCCTCATGTTCCCGCGCTTGGCGCGCAACTTTGCACGCAACGGCTACTTCCCTACCGATGAGGTCACC
CTCGAACGCGCTCTGCAGGCCCTCACTCCTGCCCCGTCGGGAAGGATGAGGATCTGTGACCCCTGCGCCGGT
GAGGGTGTTGCCCTGGCTGAGGCAGCACACACCCTCGGCCGCGATCAGGTCCAAGCCCTCGCTGTCGAGTAC
GACCGCGAGCGCGCCGACCATGCCCGAGGATTGCTTGACCGAGTGCTGCACAGTGACCTTTTCGACACCATG
ATCAGCAGGCAGTCGTTCGGACTGCTCTGGCTCAACCCGCCTTATGGCGACCTGGTGGCGGACCACTCCGGT
GCGTCGCAGTACCAGGGCAGCGGCCGCCGGCGTCTGGAGAAAGCGTTCTACCAGCGCTGCCTGCCGTTGCTG
CAGTACGGCGGCGTCATGGTTCTGATTGTTCCTCACTACGTCTTGGACGATGAGCTGACTGGCTGGTTGAGC
AACCACTTCACCGGCCTGCGCATCTACGCAGCCGCGGATCCTACCTTCAAGCAGGTGGTGATCTTCGGCATC
CGGGTCCGTCGGCAGGACCTGGCCCGGGCGGACGCCAATCAGGTGAGGTCTCGCCTGCAGGCGATCGGAGCG
GGCCAGGAAAAGGCCGAGGAAATTCCAGCGGCTTGGCCGTGGGAACCCTACGTGGTTCTGCCGGCCACCAGC
GAGCTGGAGCACTTCTACCGAGTAACCCTGGAGCCGGAGCAGTTCGCCGGTGAAATCCAGCGGCTGCGAGGT
CTCTGGCCTGACTTCAACCTGCACTTCGCGCAAGCGGGGCTGCAGCCGCGCCCACCAGTCCGCGAGCTGTCT
CGCTGGCACCTGGCCCTGGCCCTGGCCGCCGGCGCGATATCTGGCGTCGTGCGATCGAAGTCGGGCCGGATC
CTGGTCGTGAAGGGTGACACCTACAAGGACAAGGTCCGCAAGACCGAATTCACCGAGGACGACGACGGCAAC
ATCACCGAGGTGAGGATCCTCACCGACCGTTTCATCCCGATCATCCGGGCATGGGAAATGACACCCTCCTCG
GTCAATCAGGGCCGCGTGCTGACCATCAGCTCCTCGGCCGCGACCACGGAAGAAGCTGAAGAGCCCCAACCT
GAGCCGGCCCCCGCACCCGCACCGCTGCTGATCAGCCCTGGCCGGGTCGTAATGACCGCAGCCGTGAGCCAC
CTGGTGGAAACCGGTCAACTCAACCCAGCGCCTTTGCTGAAACGCCATCTGGCGGGAGATTGGGGAACGCTG
GACCAGGAAGACTGGAACACCAACCAGAGAGCCCTGAAGTTCGGCGATCGGCTGCTGTCGTCCTACGACATC
GACGCCGGCGACGAATCCAGGCTCTGGATCATCACTGAGGCAGACCGCAGCTCAACCACGCTTTTGCTCCCT
AGCGATTACTGA