ViewGene
Locus Name:
GeneID:
Location:

GeneID:833
TrivialName: PA14_14930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14930
PAO1 Ortholog Locus:PA3799
Sequence Length:1482
Protein Length:493
Start: 1267314
Stop: 1268795
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07186.1|AE004798_9 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 492/493 (99%), Positives = 492/493 (99%)
Sequence:
ATGGTTCCCGTTATTGCCCTGGTGGGTCGCCCGAACGTCGGCAAGTCCACTCTGTTCAACCGCCTGACCAAG
TCGCGCGACGCCATCGTGGCGGAGTACGCAGGCCTGACCCGCGATCGCCAGTACGGCGAGGCGCGCTGGCAG
GGCCGCACCTATATCGTCATCGATACCGGAGGCATCTCCGGCGATGAGGAAGGCATCGATGCGAAAATGGCC
GAGCAATCGTTGCAGGCCATCGAGGAGGCGGATGCCGTCCTGTTCCTGGTCGATTCGCGCGCCGGCATGACC
GCCGCCGACCAGATGATCGCGGAGCACCTGCGCAAGCGGAACAAGCGCAGCTTCCTGATCGCCAACAAGGTC
GACACCATCGATCCCGATCTCGCTCGTGCCGAGTTCAGCCCGCTGGGCCTGGGCGATGCGCTGCCGATCGCC
GCCGCCCACGGTCGCGGCATCAACCATATGCTGCAGGAAGCCCTGGGGATCTTCCCCAAGGACAACGCGGAG
GAAGAAGGCGAGGGCGAGCCGGCGAGCGAAGAGGTCGCCGAAGGCGAGGAACCGACCCGGATTCCCGGTCCC
AGCGAGAAGGACGGGATCAAGATCGCCATCATCGGCCGGCCCAACGTGGGCAAGTCGACCCTGGTCAACCGC
ATGCTCGGCGAAGAGCGGGTGATCGTCTACGACCAGGCCGGCACCACCCGCGACAGCATCTACATCCCGTTC
GAGCGCAACGAGGAGATGTACACCCTGATCGACACCGCTGGCGTGCGGCGTCGCGGCAAGATCTTCGAGGCG
GTGGAAAAGTTCTCGGTGGTGAAGACCCTCCAGGCGATCCAGGACGCCAACGTGGTGATCTTCGTCATGGAC
GCCCGCGAAGGGGTGGTCGAGCACGACCTCAACCTGCTCGGCTTCGTCCTCGAGACCGGCCGTGCCCTGGTC
ATCGCCCTGAACAAGTGGGATGGCATGGAGGCGGCCGAGCGTGACTACGTGAAGACCGAACTGGAGCGGCGC
CTGCTGTTCGTCGACTTCGCCGACATCCATTTCATTTCGGCCCTGCATGGCACCGGCGTCGGCCATCTCTAC
AAGTCGGTCCAGGAGTCCTTCCGTTCGGCGGTGACCCGCTGGCCGACCAGCCGCCTGACCAGCATCCTCGAG
GACGCCGTGCAGGTGCACCAGCCGCCGATGGTCAACGGTCGCCGGATCAAGCTGCGCTACGCCCACCTGGGC
GGCGCCAACCCGCCGCTGATCGTGATCCACGGCAACCAGGTGGACGCGGTGCCGAAGGCCTATACCCGCTAC
CTGGAGAAGACCTACCGGCGGGTATTGAAGTTGGTCGGTACGCCGATCCGCATCGAGTACAAGGGCGGCGAG
AACCCCTACGAGGGCAAGAAGAATTCGCTGACCGCGCGCCAGGTCAACAAGAAGCGCCGGCTGATGTCGCAC
CACAAGAAAGCCGAGAAGAAGAAGAAGGACAAGCGCCGCTGA
Translation:
MVPVIALVGRPNVGKSTLFNRLTKSRDAIVAEYAGLTRDRQYGEARWQGRTYIVIDTGGISGDEEGIDAKMA
EQSLQAIEEADAVLFLVDSRAGMTAADQMIAEHLRKRNKRSFLIANKVDTIDPDLARAEFSPLGLGDALPIA
AAHGRGINHMLQEALGIFPKDNAEEEGEGEPASEEVAEGEEPTRIPGPSEKDGIKIAIIGRPNVGKSTLVNR
MLGEERVIVYDQAGTTRDSIYIPFERNEEMYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMD
AREGVVEHDLNLLGFVLETGRALVIALNKWDGMEAAERDYVKTELERRLLFVDFADIHFISALHGTGVGHLY
KSVQESFRSAVTRWPTSRLTSILEDAVQVHQPPMVNGRRIKLRYAHLGGANPPLIVIHGNQVDAVPKAYTRY
LEKTYRRVLKLVGTPIRIEYKGGENPYEGKKNSLTARQVNKKRRLMSHHKKAEKKKKDKRR*
AnnotationID:842GeneID:833
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:17
Gene Name:
Confidence Code:3
GeneProduct:putative GTP-binding protein EngA
Cell Localization:()
Synonyms:engA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1160,KOG1191
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54959.1| (AE016860) GTP-binding protein EngA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 489

 Score =  810 bits (2092), Expect = 0.0
 Identities = 407/493 (82%), Positives = 445/493 (90%), Gaps = 5/493 (1%)

>emb|CAD02722.1| (AL627275) putative GTP-binding protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 490

 Score =  586 bits (1511), Expect = e-167
 Identities = 289/490 (58%), Positives = 378/490 (77%), Gaps = 5/490 (1%)

>gb|AAN81483.1|AE016764_165 (AE016764) Probable GTP-binding protein engA [Escherichia coli
           CFT073]
          Length = 503

 Score =  581 bits (1498), Expect = e-165
 Identities = 288/490 (58%), Positives = 376/490 (76%), Gaps = 5/490 (1%)






 
Structural Features:
COG1160, Predicted GTPases
CD-Length = 444 residues,  99.8% aligned
Score =  557 bits (1436), Expect = 3e-159
Identities = 235/464 (50%), Positives = 307/464 (66%), Gaps = 24/464 (5%)

KOG1191, Mitochondrial GTPase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 531 residues,  80.8% aligned
Score =  142 bits (359), Expect = 2e-34
Identities = 107/465 (23%), Positives = 182/465 (39%), Gaps = 51/465 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1669




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18811




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31760




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:833_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:833
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1505
                           PA3799_tr
                           translation of PA3799
                           493
                           99.79
                           99.79
                           0
                           2502.0
     

     
     
54620
                           gb|AAG07186.1|AE004798_9
                           (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           493
                           99.79
                           99.79
                           0
                           2502.0
     

     
     
54621
                           gb|AAO54959.1|
                           (AE016860) GTP-binding protein EngA [Pseudomonas syringae pv. tomato str. DC3000]
                           494
                           82.38
                           90.08
                           6
                           2097.0
     

     
     
54622
                           gb|AAN66482.1|AE016277_1
                           (AE016777) GTP-binding protein EngA [Pseudomonas putida KT2440]
                           493
                           81.54
                           90.46
                           6
                           2092.0
     

     
     
54627
                           gb|AAF93928.1|
                           (AE004161) GTP-binding protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           501
                           59.08
                           74.25
                           15
                           1505.0
     

     






      

          
GC ORFID: 43835How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3799Glimmer Score: 

          
Start: 3686624Stop: 3685143

          
Length: 1482


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3799 translation of PA3799Homolog Bit Score 968.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4532 (ORF: BLASTX 807.0), t_PA3799 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTCCCGTTATTGCCCTGGTGGGTCGCCCGAACGTCGGCAAGTCCACTCTGTTCAACCGCCTGACCAAG 
TCGCGCGACGCCATCGTGGCGGAGTACGCAGGCCTGACCCGCGATCGCCAGTACGGCGAGGCGCGCTGGCAG 
GGCCGCACCTATATCGTCATCGATACCGGAGGCATCTCCGGCGATGAGGAAGGCATCGATGCGAAAATGGCC 
GAGCAATCGTTGCAGGCCATCGAGGAGGCGGATGCCGTCCTGTTCCTGGTCGATTCGCGCGCCGGCATGACC 
GCCGCCGACCAGATGATCGCGGAGCACCTGCGCAAGCGGAACAAGCGCAGCTTCCTGATCGCCAACAAGGTC 
GACACCATCGATCCCGATCTCGCTCGTGCCGAGTTCAGCCCGCTGGGCCTGGGCGATGCGCTGCCGATCGCC 
GCCGCCCACGGTCGCGGCATCAACCATATGCTGCAGGAAGCCCTGGGGATCTTCCCCAAGGACAACGCGGAG 
GAAGAAGGCGAGGGCGAGCCGGCGAGCGAAGAGGTCGCCGAAGGCGAGGAACCGACCCGGATTCCCGGTCCC 
AGCGAGAAGGACGGGATCAAGATCGCCATCATCGGCCGGCCCAACGTGGGCAAGTCGACCCTGGTCAACCGC 
ATGCTCGGCGAAGAGCGGGTGATCGTCTACGACCAGGCCGGCACCACCCGCGACAGCATCTACATCCCGTTC 
GAGCGCAACGAGGAGATGTACACCCTGATCGACACCGCTGGCGTGCGGCGTCGCGGCAAGATCTTCGAGGCG 
GTGGAAAAGTTCTCGGTGGTGAAGACCCTCCAGGCGATCCAGGACGCCAACGTGGTGATCTTCGTCATGGAC 
GCCCGCGAAGGGGTGGTCGAGCACGACCTCAACCTGCTCGGCTTCGTCCTCGAGACCGGCCGTGCCCTGGTC 
ATCGCCCTGAACAAGTGGGATGGCATGGAGGCGGCCGAGCGTGACTACGTGAAGACCGAACTGGAGCGGCGC 
CTGCTGTTCGTCGACTTCGCCGACATCCATTTCATTTCGGCCCTGCATGGCACCGGCGTCGGCCATCTCTAC 
AAGTCGGTCCAGGAGTCCTTCCGTTCGGCGGTGACCCGCTGGCCGACCAGCCGCCTGACCAGCATCCTCGAG 
GACGCCGTGCAGGTGCACCAGCCGCCGATGGTCAACGGTCGCCGGATCAAGCTGCGCTACGCCCACCTGGGC 
GGCGCCAACCCGCCGCTGATCGTGATCCACGGCAACCAGGTGGACGCGGTGCCGAAGGCCTATACCCGCTAC 
CTGGAGAAGACCTACCGGCGGGTATTGAAGTTGGTCGGTACGCCGATCCGCATCGAGTACAAGGGCGGCGAG 
AACCCCTACGAGGGCAAGAAGAATTCGCTGACCGCGCGCCAGGTCAACAAGAAGCGCCGGCTGATGTCGCAC 
CACAAGAAAGCCGAGAAGAAGAAGAAGGACAAGCGCCGCTGA