ViewGene

Locus Name:
GeneID:
Location:

GeneID:83
TrivialName: PA14_33000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33000
PAO1 Ortholog Locus:PA2445
Sequence Length:2880
Protein Length:959
Start: 2886115
Stop: 2888994
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05833.1|AE004672_1 (AE004672) glycine cleavage system protein P2 [Pseudomonas aeruginosa PAO1]
Identities = 956/959 (99%), Positives = 956/959 (99%)
Sequence:
ATGACCGATAACCTGAACCTCGGCACCATCGACCTGGGCACCGACGACGAATTCATCGCCCGCCATATCGGC
CCGCGCGCCGCCGACACCCAGGCCATGCTCCAGCGCCTGGGCTACGACTCGCTGGACACGCTGATCGGCAAC
GTGATCCCGGACAGCATCAAGGGCAGCAGCGTGCTCGACCTGCCGGCCGGCATGGGCGAGGCCGAGGCGCTG
GCCAGCCTGAAGGCGATCGCCGCGCGCAATCGCGCGTTGCGTTCCTTCATCGGCCAGGGCTACTACAACTGC
CACACCCCGGCACCGATCCTGCGCAACCTCCTGGAGAACCCGGCCTGGTACACCGCCTACACGCCGTACCAG
CCGGAAATCTCCCAGGGCCGCCTGGAGGCGCTGCTGAACTTCCAGACCCTGGTCAGCGACCTGTCCGGCCTG
CCGATCGCCAACGCCTCGATGCTCGACGAGGCGACCGCCGCCGCCGAGGCCATGACCTTCTGCAAGCGCCTG
TCGAAGAACCGCACCAGCCAGGCATTCTTCGCCTCCCGCCATTGCCACCCGCAGACCCTCGACGTGCTGCGC
ACCCGTGCTGAGCCGCTGGGCATCGAGGTGGTGGTCGGCGACGAGAGCGCCATCGAAGACTTCTCCGCCTAC
TTCGGCGCGTTGCTGCAATACCCCACCTGCGACGGCGAGATCGTCGACTATCGCGAACTGGTCAGCCGCTTC
CATGCGGTCGATGCGCTGGTCGCGGTGGCCGCCGACCTGCTGGCGCTGACCCTGCTGACCCCGCCGGGCGAG
TTCGGCGCCGACGTGGCCATCGGCAGCGCCCAGCGCTTCGGCGTGCCGCTCGGCTTCGGCGGCCCGCACGCG
GCCTATTTCGCCACCCGCGACGCCTTCAAGCGGGACATGCCGGGACGCCTGGTCGGCGTCTCCATCGACCGC
CACGGCAAGCCGGCCTACCGCCTGGCCATGCAGACCCGCGAGCAGCACATCCGCCGCGAGAAAGCCACCAGC
AACATCTGCACCGCCCAGGTGCTGCTGGCCAACATCGCCAGCATGTTCGCCGTCTACCACGGCCCGCAGGGC
CTGCTGCGCATCGCCCGGCGCACCCACCGGCTGACCGCGATCCTCGCCGCCGGCCTGGAGCGCCTGGGCGTG
GCCGTCGAGCAGAAGCATTTCTTCGACACCCTGAGCCTGGCCACCGGCGCGCGTACCGCGGCGATCCATGCC
AAGGCCCGCGCCGCCGGGATCAACCTGCGCGAGATCGATGCCGGCCGTCTCGGCCTGTCGCTCGACGAGACC
GTCCGCCAGGCCGATGTGGAGACCCTCTGGGGCCTGCTGGCCGAAGAGGGCCAGGCGCTCCCGGACTTCGCC
GCCCTTGCCGCCAGCAGCGGGGACCGCCTGCCGGTCGAGCTGCTGCGCCAGTCGGCGATCCTCAGCCACCCG
ATCTTCAACCGCCATCACTCGGAAACCGAGCTGATGCGCTACCTGCGCAAGCTGGCGGACAAGGACCTGGCG
CTGGACCGCACGATGATCCCGCTGGGCTCCTGCACCATGAAGCTGAACGCCGCCAGCGAGATGATCCCGGTG
ACCTGGGCCGAATTCGGCAACCTGCACCCGTTCGCCCCGGCCGAGCAGAGCGAAGGCTACCGCCAGCTCACC
GACGAACTGGAGGCGATGCTCTGTTCCGCCACCGGCTACGACGCCGTGTCGTTGCAGCCCAACGCCGGCTCC
CAGGGCGAGTACGCCGGCCTGCTGGCGATCCGTGCCTACCACCAGAGCCGCGGCGACAGCCAGCGCGACATC
TGTCTGATCCCGTCCTCCGCCCACGGTACCAACCCGGCTACCGCCAGCATGGTCGGCATGCGCGTGGTGGTG
GTGGCCTGCGACGCGCGCGGCAACGTCGACGTCGAGGACCTGCGCAACAAGGCCAGCGAGCACAAGGAACGC
CTGGCCGCGCTGATGATCACCTATCCGTCCACCCATGGCGTGTTCGAGGAAGCGATCCGCGAGATCTGCGCC
ATCGTCCACGACTGCGGCGGCCAGGTGTACATCGACGGCGCCAACATGAACGCCATGGTCGGCCTGTGCGCC
CCGGGCAAGTTCGGTGGCGACGTTTCCCACCTGAACCTGCACAAGACCTTCTGCATCCCCCACGGCGGCGGC
GGCCCGGGCGTCGGCCCGATCGGCGTGCGCGCGCACCTGGCGCCGTTCCTCCCCGGCCACGCTCGCGGCGAG
CGCAAGGAAGGCGCGGTGAGCGCGGCGCCGTACGGCAGCGCGAGCATCCTGCCGATCACCTGGATGTACATC
CGCATGATGGGCGGCGAAGGCCTCAAGCGCGCCTCGGAAATGGCCATCCTCAATGCCAACTACATCGCCCAC
CGGCTGGAGGAGCACTACCCGGTGCTCTACGCCGGCGGCAACGGCCTGGTCGCCCACGAATGCATCCTCGAC
CTGCGTCCGCTCAAGGACAGCAGCGGGATCAGCGTCGACGACGTGGCCAAGCGCCTGATGGACTTCGGCTTC
CATGCGCCGACCATGTCCTTCCCGGTGGCCGGCACGCTGATGATCGAGCCCACCGAGAGCGAGTCGAAGGCC
GAGCTGGACCGCTTCTGCGACGCGATGATCCGCATCCGCGAGGAAATCCGCGCGGTGGAACGCGGCGAGCTG
GACAAGGAAGACAACCCGCTGAAGAACGCGCCGCACACCGCCGCCGAACTGCTCGGCGAATGGAACCATGCC
TACAGCCGCGAGCAGGCCGCCTATCCGCTGGCCAGCCTGGTGGAGGCCAAGTACTGGCCGCCGGTGGGCCGC
GTCGACAACGTCTACGGCGACCGCAACCTGACCTGCTCCTGCCCGCCGATCGAGGCGTACAGCGAGGAGTGA
Translation:
MTDNLNLGTIDLGTDDEFIARHIGPRAADTQAMLQRLGYDSLDTLIGNVIPDSIKGSSVLDLPAGMGEAEAL
ASLKAIAARNRALRSFIGQGYYNCHTPAPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLVSDLSGL
PIANASMLDEATAAAEAMTFCKRLSKNRTSQAFFASRHCHPQTLDVLRTRAEPLGIEVVVGDESAIEDFSAY
FGALLQYPTCDGEIVDYRELVSRFHAVDALVAVAADLLALTLLTPPGEFGADVAIGSAQRFGVPLGFGGPHA
AYFATRDAFKRDMPGRLVGVSIDRHGKPAYRLAMQTREQHIRREKATSNICTAQVLLANIASMFAVYHGPQG
LLRIARRTHRLTAILAAGLERLGVAVEQKHFFDTLSLATGARTAAIHAKARAAGINLREIDAGRLGLSLDET
VRQADVETLWGLLAEEGQALPDFAALAASSGDRLPVELLRQSAILSHPIFNRHHSETELMRYLRKLADKDLA
LDRTMIPLGSCTMKLNAASEMIPVTWAEFGNLHPFAPAEQSEGYRQLTDELEAMLCSATGYDAVSLQPNAGS
QGEYAGLLAIRAYHQSRGDSQRDICLIPSSAHGTNPATASMVGMRVVVVACDARGNVDVEDLRNKASEHKER
LAALMITYPSTHGVFEEAIREICAIVHDCGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGG
GPGVGPIGVRAHLAPFLPGHARGERKEGAVSAAPYGSASILPITWMYIRMMGGEGLKRASEMAILNANYIAH
RLEEHYPVLYAGGNGLVAHECILDLRPLKDSSGISVDDVAKRLMDFGFHAPTMSFPVAGTLMIEPTESESKA
ELDRFCDAMIRIREEIRAVERGELDKEDNPLKNAPHTAAELLGEWNHAYSREQAAYPLASLVEAKYWPPVGR
VDNVYGDRNLTCSCPPIEAYSEE*
AnnotationID:93GeneID:83
AnnotatorUID: urbach
Modification Date/Time: 2003-12-03 11:11:48
Gene Name:gcvP2
Confidence Code:2
GeneProduct:glycine cleavage system protein P2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Glycine, serine and threonine metabolism
Homology:
gb|AAG05833.1|AE004672_1 (AE004672) glycine cleavage system protein P2 [Pseudomonas aeruginosa PAO1]
          Length = 959

 Score = 1910 bits (4948), Expect = 0.0
 Identities = 956/959 (99%), Positives = 956/959 (99%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:169
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17311
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:83

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
160 PA2445_tr translation of PA2445 959 99.68 99.68 0 4948.0
13805 gb|AAG05833.1|AE004672_1 (AE004672) glycine cleavage system protein P2 [Pseudomonas aeruginosa PAO1] 959 99.68 99.68 0 4948.0
13807 gb|AAN66613.1|AE016289_1 (AE016777) glycine cleavage system P protein [Pseudomonas putida KT2440] 959 83.52 89.57 8 4161.0
13806 gb|AAO54801.1| (AE016860) glycine dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000] 959 82.37 90.09 5 4167.0
13808 emb|CAD17083.1| (AL646074) PROBABLE TRANSMEMBRANE GLYCINE DEHYDROGENASE [DECARBOXYLATING] OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 986 65.41 75.55 31 3301.0
GC ORFID: 43085How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2445Glimmer Score:
Start: 2067801Stop: 2064922
Length: 2880
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2445 translation of PA2445Homolog Bit Score 1910.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4966 (ORF: BLASTX 1613.0), t_PA5213 (ORF: BLASTX 1169.0), t_PA2445 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGATAACCTGAACCTCGGCACCATCGACCTGGGCACCGACGACGAATTCATCGCCCGCCATATCGGC
CCGCGCGCCGCCGACACCCAGGCCATGCTCCAGCGCCTGGGCTACGACTCGCTGGACACGCTGATCGGCAAC
GTGATCCCGGACAGCATCAAGGGCAGCAGCGTGCTCGACCTGCCGGCCGGCATGGGCGAGGCCGAGGCGCTG
GCCAGCCTGAAGGCGATCGCCGCGCGCAATCGCGCGTTGCGTTCCTTCATCGGCCAGGGCTACTACAACTGC
CACACCCCGGCACCGATCCTGCGCAACCTCCTGGAGAACCCGGCCTGGTACACCGCCTACACGCCGTACCAG
CCGGAAATCTCCCAGGGCCGCCTGGAGGCGCTGCTGAACTTCCAGACCCTGGTCAGCGACCTGTCCGGCCTG
CCGATCGCCAACGCCTCGATGCTCGACGAGGCGACCGCCGCCGCCGAGGCCATGACCTTCTGCAAGCGCCTG
TCGAAGAACCGCACCAGCCAGGCATTCTTCGCCTCCCGCCATTGCCACCCGCAGACCCTCGACGTGCTGCGC
ACCCGTGCTGAGCCGCTGGGCATCGAGGTGGTGGTCGGCGACGAGAGCGCCATCGAAGACTTCTCCGCCTAC
TTCGGCGCGTTGCTGCAATACCCCACCTGCGACGGCGAGATCGTCGACTATCGCGAACTGGTCAGCCGCTTC
CATGCGGTCGATGCGCTGGTCGCGGTGGCCGCCGACCTGCTGGCGCTGACCCTGCTGACCCCGCCGGGCGAG
TTCGGCGCCGACGTGGCCATCGGCAGCGCCCAGCGCTTCGGCGTGCCGCTCGGCTTCGGCGGCCCGCACGCG
GCCTATTTCGCCACCCGCGACGCCTTCAAGCGGGACATGCCGGGACGCCTGGTCGGCGTCTCCATCGACCGC
CACGGCAAGCCGGCCTACCGCCTGGCCATGCAGACCCGCGAGCAGCACATCCGCCGCGAGAAAGCCACCAGC
AACATCTGCACCGCCCAGGTGCTGCTGGCCAACATCGCCAGCATGTTCGCCGTCTACCACGGCCCGCAGGGC
CTGCTGCGCATCGCCCGGCGCACCCACCGGCTGACCGCGATCCTCGCCGCCGGCCTGGAGCGCCTGGGCGTG
GCCGTCGAGCAGAAGCATTTCTTCGACACCCTGAGCCTGGCCACCGGCGCGCGTACCGCGGCGATCCATGCC
AAGGCCCGCGCCGCCGGGATCAACCTGCGCGAGATCGATGCCGGCCGTCTCGGCCTGTCGCTCGACGAGACC
GTCCGCCAGGCCGATGTGGAGACCCTCTGGGGCCTGCTGGCCGAAGAGGGCCAGGCGCTCCCGGACTTCGCC
GCCCTTGCCGCCAGCAGCGGGGACCGCCTGCCGGTCGAGCTGCTGCGCCAGTCGGCGATCCTCAGCCACCCG
ATCTTCAACCGCCATCACTCGGAAACCGAGCTGATGCGCTACCTGCGCAAGCTGGCGGACAAGGACCTGGCG
CTGGACCGCACGATGATCCCGCTGGGCTCCTGCACCATGAAGCTGAACGCCGCCAGCGAGATGATCCCGGTG
ACCTGGGCCGAATTCGGCAACCTGCACCCGTTCGCCCCGGCCGAGCAGAGCGAAGGCTACCGCCAGCTCACC
GACGAACTGGAGGCGATGCTCTGTTCCGCCACCGGCTACGACGCCGTGTCGTTGCAGCCCAACGCCGGCTCC
CAGGGCGAGTACGCCGGCCTGCTGGCGATCCGTGCCTACCACCAGAGCCGCGGCGACAGCCAGCGCGACATC
TGTCTGATCCCGTCCTCCGCCCACGGTACCAACCCGGCTACCGCCAGCATGGTCGGCATGCGCGTGGTGGTG
GTGGCCTGCGACGCGCGCGGCAACGTCGACGTCGAGGACCTGCGCAACAAGGCCAGCGAGCACAAGGAACGC
CTGGCCGCGCTGATGATCACCTATCCGTCCACCCATGGCGTGTTCGAGGAAGCGATCCGCGAGATCTGCGCC
ATCGTCCACGACTGCGGCGGCCAGGTGTACATCGACGGCGCCAACATGAACGCCATGGTCGGCCTGTGCGCC
CCGGGCAAGTTCGGTGGCGACGTTTCCCACCTGAACCTGCACAAGACCTTCTGCATCCCCCACGGCGGCGGC
GGCCCGGGCGTCGGCCCGATCGGCGTGCGCGCGCACCTGGCGCCGTTCCTCCCCGGCCACGCTCGCGGCGAG
CGCAAGGAAGGCGCGGTGAGCGCGGCGCCGTACGGCAGCGCGAGCATCCTGCCGATCACCTGGATGTACATC
CGCATGATGGGCGGCGAAGGCCTCAAGCGCGCCTCGGAAATGGCCATCCTCAATGCCAACTACATCGCCCAC
CGGCTGGAGGAGCACTACCCGGTGCTCTACGCCGGCGGCAACGGCCTGGTCGCCCACGAATGCATCCTCGAC
CTGCGTCCGCTCAAGGACAGCAGCGGGATCAGCGTCGACGACGTGGCCAAGCGCCTGATGGACTTCGGCTTC
CATGCGCCGACCATGTCCTTCCCGGTGGCCGGCACGCTGATGATCGAGCCCACCGAGAGCGAGTCGAAGGCC
GAGCTGGACCGCTTCTGCGACGCGATGATCCGCATCCGCGAGGAAATCCGCGCGGTGGAACGCGGCGAGCTG
GACAAGGAAGACAACCCGCTGAAGAACGCGCCGCACACCGCCGCCGAACTGCTCGGCGAATGGAACCATGCC
TACAGCCGCGAGCAGGCCGCCTATCCGCTGGCCAGCCTGGTGGAGGCCAAGTACTGGCCGCCGGTGGGCCGC
GTCGACAACGTCTACGGCGACCGCAACCTGACCTGCTCCTGCCCGCCGATCGAGGCGTACAGCGAGGAGTGA