ViewGene
Locus Name:
GeneID:
Location:

GeneID:828
TrivialName: PA14_10010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10010
PAO1 Ortholog Locus:PA4165
Sequence Length:1491
Protein Length:496
Start: 860644
Stop: 862134
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07552.1|AE004833_3 (AE004833) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 493/496 (99%), Positives = 493/496 (99%)
Sequence:
TTGTTCAGGCAATCACTGCTCGAATCGGTCAAGGCGCGACTCCTCCATCCACAGCTCCAGGCCCTGCCGCTG
CATGCGCGAATCCAGCGCGCGATCCGCCAACTGATCCTCGACGGTGCCCTGGCGCCGGGCAATCCGTTGCCG
GCCTCGCGGGCGCTGGCGCAGTCGTTGGGGGTATCCCGCGACACCGTCGAAGCGGCCTATTCGCACCTGCAT
GCCGAGGGCTTCATCGAGCGTCGGGTCGGCAGCGGCAGCGTGGTGGCCGCGGCTACCCGGCTGTCCCCCGGC
CGGCGCGGTGCGGGCGCTCCACGACGGGTCGGCGGCGCGCCGCGACTGAGCCGGCGTGGCGAGGCGATGCAG
GCTGGCGGCGGGGTTCGCGAGCAGCTCGTCCCGCGCCCCTTCGCTCCCGGCGTGCCGGAGACCCGCACCTTT
CCCCTGGCGACCTGGGAGCGCCTGCAGCGCCAGGTCCTCAAGGAATATGGCGCGCGCGCCCTGACCCACGGC
GACCCGCAGGGCGCCGAACCGCTGCGCCAGGCGATCGCCGACTACGTCAACCTGGAGCGTGGCGCACGCGCC
ACGGCCGACCGGGTACTGGTGCTGACCAGTTCGCAACAGGCGCTGGGTCTTTGCGCCAGCGTGCTGCTCGAC
GCCGGCGAGCGGATATTCGTCGAGGACCCGGCCTACTACGGCGCGCGCAAGGCCTTCGAGGCCGCAGGCCTG
GAGTGCCTGCCGGTCCCGGTCGACGAACAGGGCCTGCGGCCCGAGCCGATCCTCGCCCAGCCGCAGGCGGCG
CGGGCGCTGTGCCTGACCCCGTCGCACCATTACCCGACCGGCGTGACCCTGTCGCTGGAGCGTCGCCTGGCG
CTGATCGAATGGGCGCAGCGGCAGCAGGCATGGATCATCGAGGACGACTACGACAGCGAGTTCCACTACGCC
GGCCGGCCCACCGCCTGCGTGCAAGGCCTGGACGTCCACGAGCGGACGCTCTACATCGGCACGTTCACCAAG
TCGCTGTTTCCCGGCCTGCGCATCGGCTACATGGTCCTGCCGCCGGCGCTGGTGGCACCGATGACCGTCGCC
CGCTCCCTGCAGGACGGGCACAACGCCTCGCTGGCGCAACTGACCCTGGCGCGCTTCATCGCCGGCGGCCAC
TTCGGCGCCTACGTGCGCGGCATGCGCAACCTCTACGGCGAGCGCCTGGGATTCCTCGCGGAGCGGGTAGGC
AAGCGTCTGGGCGGCCTGGTCGAGCCGCGCGTGCCGGCCGGCGGGCTACAGATGCCCGGGCTGCTCTGCGCG
GAAATCGACGAAACGCGCGCCATCGCGGCGGCATACCGCGCCGGTGTCGAGCTGGTCGGGCTCAGCGCCCTG
CATCTCGCCGCGCCACCGCGAGCGGGTTTCCTGATGGGCTTCGCCGCCTACACCACGGACGAGCTGGAGGCG
GCGGTCGGGGTCCTCGCGAAGACCCTGCGCGGTTTGCGTGCGAATCCCTAG
Translation:
MFRQSLLESVKARLLHPQLQALPLHARIQRAIRQLILDGALAPGNPLPASRALAQSLGVSRDTVEAAYSHLH
AEGFIERRVGSGSVVAAATRLSPGRRGAGAPRRVGGAPRLSRRGEAMQAGGGVREQLVPRPFAPGVPETRTF
PLATWERLQRQVLKEYGARALTHGDPQGAEPLRQAIADYVNLERGARATADRVLVLTSSQQALGLCASVLLD
AGERIFVEDPAYYGARKAFEAAGLECLPVPVDEQGLRPEPILAQPQAARALCLTPSHHYPTGVTLSLERRLA
LIEWAQRQQAWIIEDDYDSEFHYAGRPTACVQGLDVHERTLYIGTFTKSLFPGLRIGYMVLPPALVAPMTVA
RSLQDGHNASLAQLTLARFIAGGHFGAYVRGMRNLYGERLGFLAERVGKRLGGLVEPRVPAGGLQMPGLLCA
EIDETRAIAAAYRAGVELVGLSALHLAAPPRAGFLMGFAAYTTDELEAAVGVLAKTLRGLRANP*
AnnotationID:837GeneID:828
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4165
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator, GntR family with aminotransferase domain
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31207.1| (BX640439) probable GntR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 502

 Score =  497 bits (1280), Expect = e-140
 Identities = 269/495 (54%), Positives = 332/495 (67%), Gaps = 15/495 (3%)

>gb|AAO71020.1| (AE016846) putative GntR-family regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 493

 Score =  409 bits (1052), Expect = e-113
 Identities = 220/469 (46%), Positives = 297/469 (63%), Gaps = 7/469 (1%)








 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues, 100.0% aligned
Score =  370 bits (950), Expect = 3e-103
Identities = 174/480 (36%), Positives = 246/480 (51%), Gaps = 25/480 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14231




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18801




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36866




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:828_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:828
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1497
                           PA4165_tr
                           translation of PA4165
                           496
                           99.39
                           99.39
                           0
                           2509.0
     

     
     
54376
                           gb|AAG07552.1|AE004833_3
                           (AE004833) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           496
                           99.19
                           99.39
                           0
                           2507.0
     

     
     
54377
                           emb|CAE28239.1|
                           (BX572602) transcriptional regulator, GntR family with aminotransferase domain [Rhodopseudomonas palustris CGA009]
                           498
                           67.46
                           77.30
                           17
                           1709.0
     

     
     
54378
                           emb|CAE31207.1|
                           (BX640439) probable GntR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           511
                           52.64
                           65.36
                           24
                           1288.0
     

     
     
54379
                           gb|AAO71020.1|
                           (AE016846) putative GntR-family regulatory protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           510
                           44.31
                           60.98
                           31
                           1061.0
     

     






      

          
GC ORFID: 43830How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4165Glimmer Score: 

          
Start: 4093293Stop: 4091803

          
Length: 1491


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4165 translation of PA4165Homolog Bit Score 971.0

          
Other Homologs:  t_PA5431 (ORF: BLASTX 313.0), t_PA4165 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTTCAGGCAATCACTGCTCGAATCGGTCAAGGCGCGACTCCTCCATCCACAGCTCCAGGCCCTGCCGCTG 
CATGCGCGAATCCAGCGCGCGATCCGCCAACTGATCCTCGACGGTGCCCTGGCGCCGGGCAATCCGTTGCCG 
GCCTCGCGGGCGCTGGCGCAGTCGTTGGGGGTATCCCGCGACACCGTCGAAGCGGCCTATTCGCACCTGCAT 
GCCGAGGGCTTCATCGAGCGTCGGGTCGGCAGCGGCAGCGTGGTGGCCGCGGCTACCCGGCTGTCCCCCGGC 
CGGCGCGGTGCGGGCGCTCCACGACGGGTCGGCGGCGCGCCGCGACTGAGCCGGCGTGGCGAGGCGATGCAG 
GCTGGCGGCGGGGTTCGCGAGCAGCTCGTCCCGCGCCCCTTCGCTCCCGGCGTGCCGGAGACCCGCACCTTT 
CCCCTGGCGACCTGGGAGCGCCTGCAGCGCCAGGTCCTCAAGGAATATGGCGCGCGCGCCCTGACCCACGGC 
GACCCGCAGGGCGCCGAACCGCTGCGCCAGGCGATCGCCGACTACGTCAACCTGGAGCGTGGCGCACGCGCC 
ACGGCCGACCGGGTACTGGTGCTGACCAGTTCGCAACAGGCGCTGGGTCTTTGCGCCAGCGTGCTGCTCGAC 
GCCGGCGAGCGGATATTCGTCGAGGACCCGGCCTACTACGGCGCGCGCAAGGCCTTCGAGGCCGCAGGCCTG 
GAGTGCCTGCCGGTCCCGGTCGACGAACAGGGCCTGCGGCCCGAGCCGATCCTCGCCCAGCCGCAGGCGGCG 
CGGGCGCTGTGCCTGACCCCGTCGCACCATTACCCGACCGGCGTGACCCTGTCGCTGGAGCGTCGCCTGGCG 
CTGATCGAATGGGCGCAGCGGCAGCAGGCATGGATCATCGAGGACGACTACGACAGCGAGTTCCACTACGCC 
GGCCGGCCCACCGCCTGCGTGCAAGGCCTGGACGTCCACGAGCGGACGCTCTACATCGGCACGTTCACCAAG 
TCGCTGTTTCCCGGCCTGCGCATCGGCTACATGGTCCTGCCGCCGGCGCTGGTGGCACCGATGACCGTCGCC 
CGCTCCCTGCAGGACGGGCACAACGCCTCGCTGGCGCAACTGACCCTGGCGCGCTTCATCGCCGGCGGCCAC 
TTCGGCGCCTACGTGCGCGGCATGCGCAACCTCTACGGCGAGCGCCTGGGATTCCTCGCGGAGCGGGTAGGC 
AAGCGTCTGGGCGGCCTGGTCGAGCCGCGCGTGCCGGCCGGCGGGCTACAGATGCCCGGGCTGCTCTGCGCG 
GAAATCGACGAAACGCGCGCCATCGCGGCGGCATACCGCGCCGGTGTCGAGCTGGTCGGGCTCAGCGCCCTG 
CATCTCGCCGCGCCACCGCGAGCGGGTTTCCTGATGGGCTTCGCCGCCTACACCACGGACGAGCTGGAGGCG 
GCGGTCGGGGTCCTCGCGAAGACCCTGCGCGGTTTGCGTGCGAATCCCTAG