ViewGene

Locus Name:
GeneID:
Location:

GeneID:826
TrivialName: PA14_49570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49570
PAO1 Ortholog Locus:PA1147
Sequence Length:1491
Protein Length:496
Start: 4409608
Stop: 4411098
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04536.1|AE004544_8 (AE004544) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 495/496 (99%), Positives = 495/496 (99%)
Sequence:
ATGACTGATCTCCGCGATACCTCCCGCGACGAACGCCTGCTGGCGGCCCACGGCTATCGCCAGGAACTGGAG
CGCGGGCTGAGCCTGTGGTCGTCCTTTTCCGTCGGCTTCGCCACCATCTCGCCGGTGGTGGGCATCTACTCG
GTGATGTCCCTCGGCGCCATGAGCATGGGCCCCTCCTGGGTCTGGGTGGTGCCGCTGTGCCTGCTGCTGCAG
TTCGGCGTGGCGCTGGTCTACGCCGAGCTGTCCTCGCAGTTTCCGCTGGCCGGCGGCTGCTACCAGTGGGTG
CGGCGCCTGGTGGGCGACCGCCTGGCCTGGTTCACCGGCTTCCTCTACCTGGCTTCGGCGCTGGCCTCGCTG
ACTACCGTGGCCTACCTCGGTGGCTTCTGGCTCGGCCTGCTGGCGACCGGCGCGCCGCCGTCGGCCAACGGC
CAGGTGCTCTGCGGCGCGCTGCTGCTGGCGCTGGGACTGGCGGTGAACCTGCTGGGGATCAACCCGTTGAAG
TACTTCGTCAATGCCGGGATCGTCGCCGAGGCCATCGCCTCCATCGGTATCGGCGTGCTGTTGCTGCTGTTC
TTCCGCAACCATCCGCTCGATCTGCTGTTCAGCGGCCCGGGCGGCACAGGCGATGCGGACGGTTCCTACCTG
GACGGCGTGCTGACCGCGCTGGCGGTGGGCGGCTGGGCCTTCCTCGGCTTCGACGCCTGCTCGCAGATTTCC
GAGGAAACCACCGATGCCCGCGTCTCCACTCCCCGGGCGATCCTGCGCTCGATGCTGGTGGTGGGACTCACC
GTGATGCTCACCGCCTTCGCCGTGACCCTGTCCTACCAGGACATCGGCGCGGTGGTCAGCGGCCAGGTGGTC
GACCCGGTCACCCCGGCGGTGGTGGACGCCTTCGGCGCCTGGGCCGAGCGGCCCTTCGTCGCAGTGGTGCTG
ATCGCCTTCGTCGCCTGCGTGGTGTCGGTGCAGACCTACATCGGCCGGGCGATCTTCGGCATGGCGCGCGAC
GCCATCCTGCCCGGCTCCGCCCTGCTGCGCCGGGTCGACCGGCGCAAGGTGCCGATGGCGGCGATGGTCTGC
AGCACGCTGCTGGCCAGCCTAGGCCTGGCCCTGGGGCTGAACGCCACGGCGGTCGGCACGCTGATCGCGTTC
GGCAGCGGCGGTTTCTTCGTGGTCTTTCTGATCGTCGCCGCCTGCGCCCTCTGGGCCCGCCTCGTCGGCCGC
TGGGACCCGGACAAGGGCGCCTTGCGCCTGGGACGCGCGGGGCTGGCGGTGAACGTCCTGGCAGTCGCCTGG
CTGTCGTTCGAGGCGCTCAACGTCGCCTGGCCGCGGGCCAGCCTCGCCCCGCCCGACGCGCCCTGGTTCCAG
GTCTGGGCGGTGGTCGTGGTGTTCTCCGCGCTGGCCGCGTTCGGCCTGCTCTACATGGTCATCGCCAAGCCG
CATCGGCGCATCGCCACCAGCCTCAGCTTCGCCGCTCCGCCGGCGGACTGA
Translation:
MTDLRDTSRDERLLAAHGYRQELERGLSLWSSFSVGFATISPVVGIYSVMSLGAMSMGPSWVWVVPLCLLLQ
FGVALVYAELSSQFPLAGGCYQWVRRLVGDRLAWFTGFLYLASALASLTTVAYLGGFWLGLLATGAPPSANG
QVLCGALLLALGLAVNLLGINPLKYFVNAGIVAEAIASIGIGVLLLLFFRNHPLDLLFSGPGGTGDADGSYL
DGVLTALAVGGWAFLGFDACSQISEETTDARVSTPRAILRSMLVVGLTVMLTAFAVTLSYQDIGAVVSGQVV
DPVTPAVVDAFGAWAERPFVAVVLIAFVACVVSVQTYIGRAIFGMARDAILPGSALLRRVDRRKVPMAAMVC
STLLASLGLALGLNATAVGTLIAFGSGGFFVVFLIVAACALWARLVGRWDPDKGALRLGRAGLAVNVLAVAW
LSFEALNVAWPRASLAPPDAPWFQVWAVVVVFSALAAFGLLYMVIAKPHRRIATSLSFAAPPAD*
AnnotationID:835GeneID:826
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 15:03:54
Gene Name:
Confidence Code:3
GeneProduct:probable amino acid permease
Cell Localization:()
Synonyms:PA1147
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
     CD-Length = 466 residues,  90.8% aligned
     Score =  120 bits (301), Expect = 4e-28
Genomic Context:
Comment:
ReferenceID:1655
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18797
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:826

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1495 PA1147_tr translation of PA1147 496 99.79 99.79 0 2513.0
54317 gb|AAG04536.1|AE004544_8 (AE004544) probable amino acid permease [Pseudomonas aeruginosa PAO1] 496 99.79 99.79 0 2513.0
54318 emb|CAD86331.1| (BX321864) Amino acid permease [Nitrosomonas europaea ATCC 19718] 515 38.64 56.50 29 948.0
GC ORFID: 43828How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1147Glimmer Score:
Start: 544300Stop: 542810
Length: 1491
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1147 translation of PA1147Homolog Bit Score 972.0
Other Homologs: t_PA1147 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGATCTCCGCGATACCTCCCGCGACGAACGCCTGCTGGCGGCCCACGGCTATCGCCAGGAACTGGAG
CGCGGGCTGAGCCTGTGGTCGTCCTTTTCCGTCGGCTTCGCCACCATCTCGCCGGTGGTGGGCATCTACTCG
GTGATGTCCCTCGGCGCCATGAGCATGGGCCCCTCCTGGGTCTGGGTGGTGCCGCTGTGCCTGCTGCTGCAG
TTCGGCGTGGCGCTGGTCTACGCCGAGCTGTCCTCGCAGTTTCCGCTGGCCGGCGGCTGCTACCAGTGGGTG
CGGCGCCTGGTGGGCGACCGCCTGGCCTGGTTCACCGGCTTCCTCTACCTGGCTTCGGCGCTGGCCTCGCTG
ACTACCGTGGCCTACCTCGGTGGCTTCTGGCTCGGCCTGCTGGCGACCGGCGCGCCGCCGTCGGCCAACGGC
CAGGTGCTCTGCGGCGCGCTGCTGCTGGCGCTGGGACTGGCGGTGAACCTGCTGGGGATCAACCCGTTGAAG
TACTTCGTCAATGCCGGGATCGTCGCCGAGGCCATCGCCTCCATCGGTATCGGCGTGCTGTTGCTGCTGTTC
TTCCGCAACCATCCGCTCGATCTGCTGTTCAGCGGCCCGGGCGGCACAGGCGATGCGGACGGTTCCTACCTG
GACGGCGTGCTGACCGCGCTGGCGGTGGGCGGCTGGGCCTTCCTCGGCTTCGACGCCTGCTCGCAGATTTCC
GAGGAAACCACCGATGCCCGCGTCTCCACTCCCCGGGCGATCCTGCGCTCGATGCTGGTGGTGGGACTCACC
GTGATGCTCACCGCCTTCGCCGTGACCCTGTCCTACCAGGACATCGGCGCGGTGGTCAGCGGCCAGGTGGTC
GACCCGGTCACCCCGGCGGTGGTGGACGCCTTCGGCGCCTGGGCCGAGCGGCCCTTCGTCGCAGTGGTGCTG
ATCGCCTTCGTCGCCTGCGTGGTGTCGGTGCAGACCTACATCGGCCGGGCGATCTTCGGCATGGCGCGCGAC
GCCATCCTGCCCGGCTCCGCCCTGCTGCGCCGGGTCGACCGGCGCAAGGTGCCGATGGCGGCGATGGTCTGC
AGCACGCTGCTGGCCAGCCTAGGCCTGGCCCTGGGGCTGAACGCCACGGCGGTCGGCACGCTGATCGCGTTC
GGCAGCGGCGGTTTCTTCGTGGTCTTTCTGATCGTCGCCGCCTGCGCCCTCTGGGCCCGCCTCGTCGGCCGC
TGGGACCCGGACAAGGGCGCCTTGCGCCTGGGACGCGCGGGGCTGGCGGTGAACGTCCTGGCAGTCGCCTGG
CTGTCGTTCGAGGCGCTCAACGTCGCCTGGCCGCGGGCCAGCCTCGCCCCGCCCGACGCGCCCTGGTTCCAG
GTCTGGGCGGTGGTCGTGGTGTTCTCCGCGCTGGCCGCGTTCGGCCTGCTCTACATGGTCATCGCCAAGCCG
CATCGGCGCATCGCCACCAGCCTCAGCTTCGCCGCTCCGCCGGCGGACTGA