ViewGene
Locus Name:
GeneID:
Location:

GeneID:825
TrivialName: PA14_11190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11190
PAO1 Ortholog Locus:PA4073
Sequence Length:1488
Protein Length:495
Start: 973823
Stop: 975310
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07460.1|AE004823_6 (AE004823) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 494/495 (99%), Positives = 495/495 (100%)
Sequence:
ATGAGTATTGCCATCGACCCGTCCGTCAGCGCCTTCTTGCGCAGTCCCCATGGCCTGCTGATCGAGGGCGAG
TCCGGGCCGGCGCGTTCCGGCGCCGACATGCCGCTGTACGACCCGGCGACCGGTGCCGAGCTGGCGCGCGTG
GCCCGCGCCGGCGCCGAAGACGTCGATCGGGCGGTCGCCGCCGCGCGGCGTGCGTTCGAAGGCAACTGGGCA
GGCCAGCGCCCGGCCGATCGCGAGCGCCTGCTGCTGCGACTGGCGGAACGGATCGAGGCGCATGGCGAGCAA
CTGGCGCAGCTGGAGACCCTGAACAACGGCAAGTCGATCAACCTGTCGCGGGCCCTGGAGGTCGGCGCCTCG
GTGGAGTTCATCCGCTACATGGCCGGCTGGGCGACCAAGATCGAGGGCCGCAGCCTCGACCTGTCGATCGCT
GCGGTCCCAGGCGCGCGCTACCGGGCCTACACGGTGCCGGAGCCGGTGGGCGTGGTCGGAGCCATCGTGCCG
TGGAATTTCCCCTTGCTGATGGCGATCTGGAAGATCGTCCCGGCCCTGGCCTGCGGCTGCACCGTAGTCCTC
AAACCGGCCGACGAAACCCCGCTGACCGCCCTGCGCCTCGGCCAGTTGTGCCTGGAGGCGGGGATTCCACCA
GGGGTGGTGAACATCGTCACCGGCACGGGCGCCGAGGCCGGCGCGGCACTGGCGGCGCACCCGGGCATCGAC
AAGCTGGCGTTCACCGGCTCGACCCCGGTGGGCAAGCTGATCGGGCATGCGGCGGTGGAGAACATGACGCGT
TTTTCCCTCGAACTCGGCGGCAAATCCCCGGTGATCATCCTCGATGACACCAGCCTGGACATGGCTGCCGCC
GGTTCCGCCGGCGCGATCTTCTTCAACCAGGGGCAGGTCTGCACCGCTGGTTCGCGCCTCTATGTGCAGCGC
AAGCGTTTCGACCAGGTGCTGGAGCGCCTGGCGGCCATCGCCGGCGACCTGAGCATCGGCCCCGGCCTGGAT
CCGACCACGCAGATCAACCCGCTGGTCTCGGCCAGGCAGCAGGAGCGGGTGCTGGGGATGATCGAAAGCGGG
GTGGCCGAGGGCGCCAGCGTGGTCTGCGGCGGGGCGCGCCAGGGCGAGACGGGGTTCTACGTGCAGCCGACG
ATCCTTGCCGACGTTACCCCGGGGATGCAGGTGGTGCGCGAGGAAATCTTCGGGCCGGTGCTGGTGGCGACG
CCCTTCGACGATCTCGACGAAGCGGTGCGTCTGGCCAACGACAGCATCTACGGGCTCGGTGCGAGCATCTGG
TCCAACGACCTGCGCCAGGTCATGGACCTGGTGCCCAGGATCAAGGCCGGCACGGTATGGGTGAACGCCCAC
AACCTGCTCGACCCGTCGATGCCGTTCGGCGGCTTCAAGCAGTCCGGCATCGGTCGCGAGATGGGCCATGCG
GCGATCGAGGCGTACACCGAGAACAAGTCGGTGTGCATCGCCTACTGA
Translation:
MSIAIDPSVSAFLRSPHGLLIEGESGPARSGADMPLYDPATGAELARVARAGAEDVDRAVAAARRAFEGNWA
GQRPADRERLLLRLAERIEAHGEQLAQLETLNNGKSINLSRALEVGASVEFIRYMAGWATKIEGRSLDLSIA
AVPGARYRAYTVPEPVGVVGAIVPWNFPLLMAIWKIVPALACGCTVVLKPADETPLTALRLGQLCLEAGIPP
GVVNIVTGTGAEAGAALAAHPGIDKLAFTGSTPVGKLIGHAAVENMTRFSLELGGKSPVIILDDTSLDMAAA
GSAGAIFFNQGQVCTAGSRLYVQRKRFDQVLERLAAIAGDLSIGPGLDPTTQINPLVSARQQERVLGMIESG
VAEGASVVCGGARQGETGFYVQPTILADVTPGMQVVREEIFGPVLVATPFDDLDEAVRLANDSIYGLGASIW
SNDLRQVMDLVPRIKAGTVWVNAHNLLDPSMPFGGFKQSGIGREMGHAAIEAYTENKSVCIAY*
AnnotationID:834GeneID:825
AnnotatorUID: diggins
Modification Date/Time: 2005-06-08 11:11:32
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:styD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative phenylacetaldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69065.1|AE016539_6 (AE016787) aldehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 497

 Score =  563 bits (1451), Expect = e-160
 Identities = 285/492 (57%), Positives = 363/492 (73%), Gaps = 2/492 (0%)

>emb|CAC10505.1| (AJ296087) succinatesemialdehyde dehydrogenase [Pseudonocardia sp.
           K1]
          Length = 500

 Score =  528 bits (1359), Expect = e-149
 Identities = 265/489 (54%), Positives = 350/489 (71%), Gaps = 7/489 (1%)

>emb|CAA04003.1| (AJ000330) phenylacetaldehyde dehydrogenase [Pseudomonas sp. Y2]
          Length = 502

 Score =  523 bits (1346), Expect = e-147
 Identities = 268/499 (53%), Positives = 351/499 (70%), Gaps = 5/499 (1%)






 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. 
CD-Length = 464 residues,  99.4% aligned
Score =  545 bits (1407), Expect = 3e-156
Identities = 242/468 (51%), Positives = 319/468 (68%), Gaps = 7/468 (1%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.4% aligned
Score =  492 bits (1267), Expect = 5e-140
Identities = 233/481 (48%), Positives = 308/481 (64%), Gaps = 14/481 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1653




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18795




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36822




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:825_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:825
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1488
                           PA4073_tr
                           translation of PA4073
                           495
                           99.79
                           99.99
                           0
                           2516.0
     

     
     
54105
                           gb|AAG07460.1|AE004823_6
                           (AE004823) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           495
                           99.79
                           99.99
                           0
                           2516.0
     

     
     
54106
                           gb|AAN69065.1|AE016539_6
                           (AE016787) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           498
                           57.22
                           72.89
                           4
                           1452.0
     

     
     
54108
                           emb|CAA04003.1|
                           (AJ000330) phenylacetaldehyde dehydrogenase [Pseudomonas sp. Y2]
                           502
                           53.38
                           69.92
                           7
                           1353.0
     

     
     
54109
                           emb|CAB06826.1|
                           (Z92524) StyD protein [Pseudomonas fluorescens]
                           502
                           53.18
                           69.92
                           7
                           1348.0
     

     






      

          
GC ORFID: 43827How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4073Glimmer Score: 

          
Start: 3980114Stop: 3978627

          
Length: 1488


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4073 translation of PA4073Homolog Bit Score 973.0

          
Other Homologs:  t_PA0219 (ORF: BLASTX 403.0), t_PA5312 (ORF: BLASTX 374.0), t_PA4189 (ORF: BLASTX 369.0), psyr_15may02_Scaffold2_revised_gene3152 (ORF: BLASTX 363.0), psyr_15may02_Scaffold1_revised_gene155 (ORF: BLASTX 362.0), t_PA3504 (ORF: BLASTX 360.0), t_PA5373 (ORF: BLASTX 353.0), psyr_15may02_Scaffold8_revised_gene7514 (ORF: BLASTX 347.0), t_PA4123 (ORF: BLASTX 346.0), psyr_15may02_Scaffold2_revised_gene3624 (ORF: BLASTX 333.0), psyr_15may02_Scaffold2_revised_gene3643 (ORF: BLASTX 271.0), t_PA4073 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTATTGCCATCGACCCGTCCGTCAGCGCCTTCTTGCGCAGTCCCCATGGCCTGCTGATCGAGGGCGAG 
TCCGGGCCGGCGCGTTCCGGCGCCGACATGCCGCTGTACGACCCGGCGACCGGTGCCGAGCTGGCGCGCGTG 
GCCCGCGCCGGCGCCGAAGACGTCGATCGGGCGGTCGCCGCCGCGCGGCGTGCGTTCGAAGGCAACTGGGCA 
GGCCAGCGCCCGGCCGATCGCGAGCGCCTGCTGCTGCGACTGGCGGAACGGATCGAGGCGCATGGCGAGCAA 
CTGGCGCAGCTGGAGACCCTGAACAACGGCAAGTCGATCAACCTGTCGCGGGCCCTGGAGGTCGGCGCCTCG 
GTGGAGTTCATCCGCTACATGGCCGGCTGGGCGACCAAGATCGAGGGCCGCAGCCTCGACCTGTCGATCGCT 
GCGGTCCCAGGCGCGCGCTACCGGGCCTACACGGTGCCGGAGCCGGTGGGCGTGGTCGGAGCCATCGTGCCG 
TGGAATTTCCCCTTGCTGATGGCGATCTGGAAGATCGTCCCGGCCCTGGCCTGCGGCTGCACCGTAGTCCTC 
AAACCGGCCGACGAAACCCCGCTGACCGCCCTGCGCCTCGGCCAGTTGTGCCTGGAGGCGGGGATTCCACCA 
GGGGTGGTGAACATCGTCACCGGCACGGGCGCCGAGGCCGGCGCGGCACTGGCGGCGCACCCGGGCATCGAC 
AAGCTGGCGTTCACCGGCTCGACCCCGGTGGGCAAGCTGATCGGGCATGCGGCGGTGGAGAACATGACGCGT 
TTTTCCCTCGAACTCGGCGGCAAATCCCCGGTGATCATCCTCGATGACACCAGCCTGGACATGGCTGCCGCC 
GGTTCCGCCGGCGCGATCTTCTTCAACCAGGGGCAGGTCTGCACCGCTGGTTCGCGCCTCTATGTGCAGCGC 
AAGCGTTTCGACCAGGTGCTGGAGCGCCTGGCGGCCATCGCCGGCGACCTGAGCATCGGCCCCGGCCTGGAT 
CCGACCACGCAGATCAACCCGCTGGTCTCGGCCAGGCAGCAGGAGCGGGTGCTGGGGATGATCGAAAGCGGG 
GTGGCCGAGGGCGCCAGCGTGGTCTGCGGCGGGGCGCGCCAGGGCGAGACGGGGTTCTACGTGCAGCCGACG 
ATCCTTGCCGACGTTACCCCGGGGATGCAGGTGGTGCGCGAGGAAATCTTCGGGCCGGTGCTGGTGGCGACG 
CCCTTCGACGATCTCGACGAAGCGGTGCGTCTGGCCAACGACAGCATCTACGGGCTCGGTGCGAGCATCTGG 
TCCAACGACCTGCGCCAGGTCATGGACCTGGTGCCCAGGATCAAGGCCGGCACGGTATGGGTGAACGCCCAC 
AACCTGCTCGACCCGTCGATGCCGTTCGGCGGCTTCAAGCAGTCCGGCATCGGTCGCGAGATGGGCCATGCG 
GCGATCGAGGCGTACACCGAGAACAAGTCGGTGTGCATCGCCTACTGA