ViewGene
Locus Name:
GeneID:
Location:

GeneID:824
TrivialName: PA14_71680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71680
PAO1 Ortholog Locus:PA5431
Sequence Length:1476
Protein Length:491
Start: 6386697
Stop: 6385222
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08816.1|AE004955_10 (AE004955) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 489/491 (99%), Positives = 489/491 (99%)
Sequence:
ATGGCCACCGTACTGCCCTTCGACCCCGCCGGCATCCACCTCGACCCCGCCCAGGGCCTGGCCCGCCAGCTC
TACGCCGCGCTGCGCGAACGGATCCTCGACGGCCGCCTCGGCAGCCGCACGCGGATGCCCGCCAGCCGTGAG
CTGGCCCAGGCCCTGAAGGTCTCGCGCAACACCGTGGTGCGGGCCTATGAACAGTTGCACGCCGAGGGCTAT
ATCGACGGGCGCACAGGCGACGGCACCTACGTTGCCGAGTTGCAGGAAATCCCAGGCAGGGCCCCCGCCGTC
GCCCCGAGCGCTCCCGCGCCGCGCGGCCCGGCGGCCCTGGCGCCGCCACCGGAAGGCGCGCCGCGAGCGTTC
CGCGTCGGCGTGCCGGCCTTCGACCTGTTCCCCTTCGACACCTGGGCGCGGCTACAGGCGCGCTTCTGGCGC
AACCCGCCGGCGGACTGCCTGGGCTACGGCGATCCGGCCGGCGAGGCGCGCCTGCGCGAGCTGATCGCCGCC
TACCTGCGCAGCGCTCGCGGCCTGCGCTGCGAGGCGGAACAGGTGATCGTCACCCATGGCGCGCAGCAGGCC
ATCCGCCTGTGCGCCCAGGTGTTGCTCGAGAACGGCGATCCGGTGGCTGTGGAAAACCCCGGCTACCGCGCG
GCGCGCCTGGCCTTCGCCGCGACCGGCGCGGTACCGCACGGGATCGACATCGACGCCGAGGGCCTGCGCAGC
GACCGGCTCGCGGGCATCGCCGGCTGCCGCCTGGCCTATGTCACGCCGTCACACCAGTACCCCACCGGCGTC
ACCCTGTCGCTGGCGCGGCGCCTGGAGCTGCTGGAGTGGGCCGAGCGCGCCGACGGCTGGATCGTCGAGGAC
GACTACGACGGCGAGTATCGCTACAGCGGTACGCCGCTGGCGCCGCTGGCCGCGCTGGACCGACAGGGCCGG
GTGCTCTACGTCGGGACCTTCTGCAAGATCGCCTTCCCGGCGTTGCGCCTGGGCTACCTGGTGGTCCCGCCG
GCGCTGGTCGAGCGCTTCCGCCAGCGGCGGGCCATCGAGGTACGCCATTCGGAGGTGGGCACCCAGCGGGTC
ATGGCCGACTTCATCGCCGAGGGGCATTTCCAGCGCCACGTCCGCCGCATGCGCCGCGCCGCCCGCGCCCGC
CGCGACGCCTTGCTGCGGGGCTGGCCAGAGGCGCCGGGTTGCCAGCCGTTGCCGGCGGTGGAGGCGGGGCTG
CACCTGTGCGTGCGGGTCGACAGCCTGGCGCGCGAGCGGGCCCTGATCGCCGCGGCGGCAGCCGCCGGGGTG
GAAGTCAGCGCCTTGAGCGACTACTGGATGGACGACTCCAGCGTTGCGCCAGACGACCGCGCGGGCCTGGTG
CTGGGCTTCGCGGCAGTACCCGAGGCGCGTATCGACGAAGCGCTGCGGGCGTTGCGCAAGGCCTGGCGGCGG
GAGGCCCTGGTTGGACCCGTCGTCGCGACTGACTAG
Translation:
MATVLPFDPAGIHLDPAQGLARQLYAALRERILDGRLGSRTRMPASRELAQALKVSRNTVVRAYEQLHAEGY
IDGRTGDGTYVAELQEIPGRAPAVAPSAPAPRGPAALAPPPEGAPRAFRVGVPAFDLFPFDTWARLQARFWR
NPPADCLGYGDPAGEARLRELIAAYLRSARGLRCEAEQVIVTHGAQQAIRLCAQVLLENGDPVAVENPGYRA
ARLAFAATGAVPHGIDIDAEGLRSDRLAGIAGCRLAYVTPSHQYPTGVTLSLARRLELLEWAERADGWIVED
DYDGEYRYSGTPLAPLAALDRQGRVLYVGTFCKIAFPALRLGYLVVPPALVERFRQRRAIEVRHSEVGTQRV
MADFIAEGHFQRHVRRMRRAARARRDALLRGWPEAPGCQPLPAVEAGLHLCVRVDSLARERALIAAAAAAGV
EVSALSDYWMDDSSVAPDDRAGLVLGFAAVPEARIDEALRALRKAWRREALVGPVVATD*
AnnotationID:833GeneID:824
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:22
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA5431
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70907.1|AE016734_11 (AE016794) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 509

 Score =  603 bits (1554), Expect = e-171
 Identities = 313/503 (62%), Positives = 369/503 (73%), Gaps = 26/503 (5%)

>gb|AAO58923.1| (AE016876) transcriptional regulator, GntR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 520

 Score =  582 bits (1501), Expect = e-165
 Identities = 308/509 (60%), Positives = 366/509 (71%), Gaps = 45/509 (8%)






 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  98.7% aligned
Score =  394 bits (1013), Expect = 1e-110
Identities = 193/468 (41%), Positives = 246/468 (52%), Gaps = 20/468 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34670




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:824_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:824
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1485
                           PA5431_tr
                           translation of PA5431
                           491
                           99.59
                           99.59
                           0
                           2519.0
     

     
     
54084
                           gb|AAG08816.1|AE004955_10
                           (AE004955) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           491
                           99.59
                           99.59
                           0
                           2519.0
     

     
     
54085
                           gb|AAN70907.1|AE016734_11
                           (AE016794) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           520
                           60.19
                           70.96
                           40
                           1570.0
     

     
     
54086
                           dbj|BAC87870.1|
                           (AB117616) hypothetical protein [Pseudomonas fluorescens]
                           548
                           58.94
                           67.70
                           70
                           1569.0
     

     
     
54087
                           gb|AAO58923.1|
                           (AE016876) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           535
                           58.13
                           69.15
                           59
                           1531.0
     

     






      

          
GC ORFID: 43826How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5431Glimmer Score: 

          
Start: 5650386Stop: 5648911

          
Length: 1476


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5431 translation of PA5431Homolog Bit Score 974.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4183 (ORF: BLASTX 588.0), t_PA4165 (ORF: BLASTX 314.0), t_PA0268 (ORF: BLASTX 312.0), t_PA5431 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACCGTACTGCCCTTCGACCCCGCCGGCATCCACCTCGACCCCGCCCAGGGCCTGGCCCGCCAGCTC 
TACGCCGCGCTGCGCGAACGGATCCTCGACGGCCGCCTCGGCAGCCGCACGCGGATGCCCGCCAGCCGTGAG 
CTGGCCCAGGCCCTGAAGGTCTCGCGCAACACCGTGGTGCGGGCCTATGAACAGTTGCACGCCGAGGGCTAT 
ATCGACGGGCGCACAGGCGACGGCACCTACGTTGCCGAGTTGCAGGAAATCCCAGGCAGGGCCCCCGCCGTC 
GCCCCGAGCGCTCCCGCGCCGCGCGGCCCGGCGGCCCTGGCGCCGCCACCGGAAGGCGCGCCGCGAGCGTTC 
CGCGTCGGCGTGCCGGCCTTCGACCTGTTCCCCTTCGACACCTGGGCGCGGCTACAGGCGCGCTTCTGGCGC 
AACCCGCCGGCGGACTGCCTGGGCTACGGCGATCCGGCCGGCGAGGCGCGCCTGCGCGAGCTGATCGCCGCC 
TACCTGCGCAGCGCTCGCGGCCTGCGCTGCGAGGCGGAACAGGTGATCGTCACCCATGGCGCGCAGCAGGCC 
ATCCGCCTGTGCGCCCAGGTGTTGCTCGAGAACGGCGATCCGGTGGCTGTGGAAAACCCCGGCTACCGCGCG 
GCGCGCCTGGCCTTCGCCGCGACCGGCGCGGTACCGCACGGGATCGACATCGACGCCGAGGGCCTGCGCAGC 
GACCGGCTCGCGGGCATCGCCGGCTGCCGCCTGGCCTATGTCACGCCGTCACACCAGTACCCCACCGGCGTC 
ACCCTGTCGCTGGCGCGGCGCCTGGAGCTGCTGGAGTGGGCCGAGCGCGCCGACGGCTGGATCGTCGAGGAC 
GACTACGACGGCGAGTATCGCTACAGCGGTACGCCGCTGGCGCCGCTGGCCGCGCTGGACCGACAGGGCCGG 
GTGCTCTACGTCGGGACCTTCTGCAAGATCGCCTTCCCGGCGTTGCGCCTGGGCTACCTGGTGGTCCCGCCG 
GCGCTGGTCGAGCGCTTCCGCCAGCGGCGGGCCATCGAGGTACGCCATTCGGAGGTGGGCACCCAGCGGGTC 
ATGGCCGACTTCATCGCCGAGGGGCATTTCCAGCGCCACGTCCGCCGCATGCGCCGCGCCGCCCGCGCCCGC 
CGCGACGCCTTGCTGCGGGGCTGGCCAGAGGCGCCGGGTTGCCAGCCGTTGCCGGCGGTGGAGGCGGGGCTG 
CACCTGTGCGTGCGGGTCGACAGCCTGGCGCGCGAGCGGGCCCTGATCGCCGCGGCGGCAGCCGCCGGGGTG 
GAAGTCAGCGCCTTGAGCGACTACTGGATGGACGACTCCAGCGTTGCGCCAGACGACCGCGCGGGCCTGGTG 
CTGGGCTTCGCGGCAGTACCCGAGGCGCGTATCGACGAAGCGCTGCGGGCGTTGCGCAAGGCCTGGCGGCGG 
GAGGCCCTGGTTGGACCCGTCGTCGCGACTGACTAG