ViewGene

Locus Name:
GeneID:
Location:

GeneID:822
TrivialName: PA14_07940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07940
PAO1 Ortholog Locus:PA0609
Sequence Length:1479
Protein Length:492
Start: 683802
Stop: 685280
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03998.1|AE004497_5 (AE004497) anthranilate synthetase component I [Pseudomonas aeruginosa PAO1]
Identities = 491/492 (99%), Positives = 492/492 (100%)
Sequence:
ATGAATCGCGAAGAATTCCTGCGGCTGGCCGCCGATGGCTACAACCGCATCCCGCTGTCCTTCGAGACCCTT
GCCGACTTCGACACGCCGCTGTCGATCTACCTGAAGCTGGCCGACGCGCCGAACTCCTACCTGCTGGAGTCG
GTGCAGGGCGGCGAGAAATGGGGGCGCTATTCGATCATCGGCCTGCCGTGTCGCACGGTGCTGCGGGTCTAC
GACCATCAAGTGCGGATCAGCATCGATGGCATGGAAACCGAGCGCTTCGATTGCGCCGACCCGCTGGCTTTC
GTCGAGGAGTTCAAGGCGCGCTACCAGGTGCCCACCGTGCCCGGCTTGCCACGTTTCGATGGAGGCCTGGTC
GGCTATTTCGGTTACGACTGCGTGCGCTACGTGGAAAAACGCCTGGCCACCTGTCCGAACCCGGACCCGCTG
GGCAACCCGGATATCCTGTTGATGGTGTCCGATGCCGTAGTGGTATTCGACAACCTGGCTGGGAAGATCCAC
GCCATCGTCCTCGCCGATCCCTCCGAGGAAAATGCCTACGAGCGCGGCCAGGCACGTCTGGAGGAGCTGCTG
GAGCGTCTGCGCCAGCCGATCACCCCGCGTCGCGGCCTCGACCTCGAGGCGGCCCAGGGCCGGGAGCCGGCG
TTTCGTGCCAGCTTCACCCGCGAGGACTATGAAAACGCGGTAGGAAGGATCAAGGACTACATCCTGGCCGGC
GACTGCATGCAGGTGGTGCCGTCGCAGCGCATGTCCATCGAGTTCAAGGCGGCGCCCATCGACCTGTACCGC
GCGCTGCGCTGTTTCAATCCGACGCCCTACATGTACTTCTTCAACTTCGGCGACTTCCATGTCGTGGGCAGC
TCGCCGGAGGTGCTGGTACGGGTCGAGGATGGCCTGGTGACGGTGCGCCCGATCGCCGGTACCCGTCCGCGC
GGGATCAACGAAGAGGCCGACCTGGCGCTGGAGCAGGATCTGCTGTCGGACGCCAAGGAGATCGCCGAGCAC
CTGATGCTGATCGACCTGGGGCGCAACGACGTGGGGCGGGTGTCCGACATCGGCGCGGTGAAGGTCACCGAA
AAAATGGTGATCGAACGTTACTCCAACGTCATGCACATCGTGTCCAACGTCACCGGGCAATTGCGCGAGGGG
CTCAGCGCGATGGACGCGCTGCGGGCGATCCTGCCGGCGGGTACGCTGTCCGGCGCGCCGAAGATCCGCGCC
ATGGAGATCATCGACGAGCTGGAGCCGGTCAAGCGTGGAGTCTACGGCGGCGCGGTCGGCTACCTGGCATGG
AACGGCAACATGGACACCGCCATTGCCATCCGCACCGCGGTGATCAAGAACGGTGAACTCCACGTGCAGGCC
GGCGGCGGTATCGTTGCCGACTCGGTGCCGGCGCTGGAGTGGGAAGAAACCATCAACAAGCGCCGGGCGATG
TTCCGCGCCGTGGCGCTGGCCGAGCAGAGCGTCGAGTAA
Translation:
MNREEFLRLAADGYNRIPLSFETLADFDTPLSIYLKLADAPNSYLLESVQGGEKWGRYSIIGLPCRTVLRVY
DHQVRISIDGMETERFDCADPLAFVEEFKARYQVPTVPGLPRFDGGLVGYFGYDCVRYVEKRLATCPNPDPL
GNPDILLMVSDAVVVFDNLAGKIHAIVLADPSEENAYERGQARLEELLERLRQPITPRRGLDLEAAQGREPA
FRASFTREDYENAVGRIKDYILAGDCMQVVPSQRMSIEFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGS
SPEVLVRVEDGLVTVRPIAGTRPRGINEEADLALEQDLLSDAKEIAEHLMLIDLGRNDVGRVSDIGAVKVTE
KMVIERYSNVMHIVSNVTGQLREGLSAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKRGVYGGAVGYLAW
NGNMDTAIAIRTAVIKNGELHVQAGGGIVADSVPALEWEETINKRRAMFRAVALAEQSVE*
AnnotationID:831GeneID:822
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:08
Gene Name:trpE
Confidence Code:1
GeneProduct:anthranilate synthetase component I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:para-aminobenzoate synthases component I
Functional Category Confidence Code:5
COGs:COG0147,pfam00425
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.1.3.27
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66047.1|AE016233_13 (AE016775) anthranilate synthase, component I [Pseudomonas putida
           KT2440]
          Length = 493

 Score =  845 bits (2182), Expect = 0.0
 Identities = 424/490 (86%), Positives = 451/490 (92%)

>gb|AAO54110.1| (AE016857) anthranilate synthase, component I [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 493

 Score =  838 bits (2166), Expect = 0.0
 Identities = 416/492 (84%), Positives = 447/492 (90%)

>gb|AAM39777.1| (AE012143) anthranilate synthase component I [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 491

 Score =  565 bits (1456), Expect = e-160
 Identities = 288/488 (59%), Positives = 361/488 (73%), Gaps = 1/488 (0%)
Structural Features:
COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I 
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 462 residues,  99.6% aligned
Score =  514 bits (1326), Expect = 7e-147
Identities = 237/477 (49%), Positives = 303/477 (63%), Gaps = 21/477 (4%)

pfam00425, Chorismate_bind, chorismate binding enzyme. 
CD-Length = 263 residues, 100.0% aligned
Score =  377 bits (969), Expect = 2e-105
Identities = 154/263 (58%), Positives = 198/263 (75%)
Genomic Context:
Comment:
ReferenceID:1647
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18789
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33898
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:822_cdd.html
URL:
ReferenceID:35260
Author/Investigator(s): Essar DW, Eberly L, Hadero A, Crawford IP.
Title: Identification and characterization of genes for a second anthranilate synthase in Pseudomonas aeruginosa: interchangeability of the two anthranilate synthases and evolutionary implications.
PubMed: 2153661
MedLine:
Source:
J Bacteriol. 1990 Feb;172(2):884-900.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2153661
ReferenceID:35261
Author/Investigator(s): Essar DW, Eberly L, Han CY, Crawford IP.
Title: DNA sequences and characterization of four early genes of the tryptophan pathway in Pseudomonas aeruginosa.
PubMed: 2105306
MedLine:
Source:
J Bacteriol. 1990 Feb;172(2):853-66.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2105306
ReferenceID:35262
Author/Investigator(s): Crawford IP, Eberly L.
Title: Structure and regulation of the anthranilate synthase genes in Pseudomonas aeruginosa: I. Sequence of trpG encoding the glutamine amidotransferase subunit.
PubMed: 3127654
MedLine:
Source:
Mol Biol Evol. 1986 Sep;3(5):436-48.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3127654
Homologs By Global Alignment
Gene ID:822

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1481 PA0609_tr translation of PA0609 492 99.79 99.99 0 2524.0
53948 dbj|BAA83144.1| (AB030825) anthranilate synthetase component 1 [Pseudomonas aeruginosa] 492 99.79 99.99 0 2524.0
53947 gb|AAG03998.1|AE004497_5 (AE004497) anthranilate synthetase component I [Pseudomonas aeruginosa PAO1] 492 99.79 99.99 0 2524.0
53949 gb|AAN66047.1|AE016233_13 (AE016775) anthranilate synthase, component I [Pseudomonas putida KT2440] 493 86.00 91.48 1 2179.0
53950 gb|AAA80551.1| (M33799) anthranilate synthetase alpha-subunit [Pseudomonas putida] 493 85.80 90.66 1 2171.0
GC ORFID: 43824How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0609Glimmer Score:
Start: 6485145Stop: 6486623
Length: 1479
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0609 translation of PA0609Homolog Bit Score 976.0
Other Homologs: psyr_15may02_Scaffold13_revised_gene2141 (ORF: BLASTX 835.0), t_PA1758 (ORF: BLASTX 252.0), t_PA0609 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCGCGAAGAATTCCTGCGGCTGGCCGCCGATGGCTACAACCGCATCCCGCTGTCCTTCGAGACCCTT
GCCGACTTCGACACGCCGCTGTCGATCTACCTGAAGCTGGCCGACGCGCCGAACTCCTACCTGCTGGAGTCG
GTGCAGGGCGGCGAGAAATGGGGGCGCTATTCGATCATCGGCCTGCCGTGTCGCACGGTGCTGCGGGTCTAC
GACCATCAAGTGCGGATCAGCATCGATGGCATGGAAACCGAGCGCTTCGATTGCGCCGACCCGCTGGCTTTC
GTCGAGGAGTTCAAGGCGCGCTACCAGGTGCCCACCGTGCCCGGCTTGCCACGTTTCGATGGAGGCCTGGTC
GGCTATTTCGGTTACGACTGCGTGCGCTACGTGGAAAAACGCCTGGCCACCTGTCCGAACCCGGACCCGCTG
GGCAACCCGGATATCCTGTTGATGGTGTCCGATGCCGTAGTGGTATTCGACAACCTGGCTGGGAAGATCCAC
GCCATCGTCCTCGCCGATCCCTCCGAGGAAAATGCCTACGAGCGCGGCCAGGCACGTCTGGAGGAGCTGCTG
GAGCGTCTGCGCCAGCCGATCACCCCGCGTCGCGGCCTCGACCTCGAGGCGGCCCAGGGCCGGGAGCCGGCG
TTTCGTGCCAGCTTCACCCGCGAGGACTATGAAAACGCGGTAGGAAGGATCAAGGACTACATCCTGGCCGGC
GACTGCATGCAGGTGGTGCCGTCGCAGCGCATGTCCATCGAGTTCAAGGCGGCGCCCATCGACCTGTACCGC
GCGCTGCGCTGTTTCAATCCGACGCCCTACATGTACTTCTTCAACTTCGGCGACTTCCATGTCGTGGGCAGC
TCGCCGGAGGTGCTGGTACGGGTCGAGGATGGCCTGGTGACGGTGCGCCCGATCGCCGGTACCCGTCCGCGC
GGGATCAACGAAGAGGCCGACCTGGCGCTGGAGCAGGATCTGCTGTCGGACGCCAAGGAGATCGCCGAGCAC
CTGATGCTGATCGACCTGGGGCGCAACGACGTGGGGCGGGTGTCCGACATCGGCGCGGTGAAGGTCACCGAA
AAAATGGTGATCGAACGTTACTCCAACGTCATGCACATCGTGTCCAACGTCACCGGGCAATTGCGCGAGGGG
CTCAGCGCGATGGACGCGCTGCGGGCGATCCTGCCGGCGGGTACGCTGTCCGGCGCGCCGAAGATCCGCGCC
ATGGAGATCATCGACGAGCTGGAGCCGGTCAAGCGTGGAGTCTACGGCGGCGCGGTCGGCTACCTGGCATGG
AACGGCAACATGGACACCGCCATTGCCATCCGCACCGCGGTGATCAAGAACGGTGAACTCCACGTGCAGGCC
GGCGGCGGTATCGTTGCCGACTCGGTGCCGGCGCTGGAGTGGGAAGAAACCATCAACAAGCGCCGGGCGATG
TTCCGCGCCGTGGCGCTGGCCGAGCAGAGCGTCGAGTAA