ViewGene
Locus Name:
GeneID:
Location:

GeneID:821
TrivialName: PA14_71800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71800
PAO1 Ortholog Locus:PA5439
Sequence Length:1467
Protein Length:488
Start: 6395062
Stop: 6396528
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08824.1|AE004956_8 (AE004956) probable glucose-6-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 488/488 (100%), Positives = 488/488 (100%)
Sequence:
TTGAGTACACCAGCCACTCCAACGTCCTGCGACATCCTGGTCTTCGGCGGTACCGGCGACCTGGCCCTGCAC
AAGCTGCTGCCGGCGCTCTATCGCCTGCACCGGGAGGACCGCCTGCCGGCCGATACGCGGATCTTCGCCCTC
GCCCGCAGCGCGCTGGACAACGCCGCCTTCCTCGCCCTCGCCGAGCGCAACGTCCGCGCGGTGGTGGCACGC
AGCGAGTTCGCCGCCGAACAATGGAAAGGCTTCGCCGCGCGCCTCGACTACCTGGCCATGGACGCCTCGCAG
AGCGCCGACTTCGGCCGTCTCGCGCGGCACCTGAAGAGCAGCGAGGGCCGGGTGCTGGTGCACTACCTGGCG
ACCTCGCCGAGCCTGTTCGCGCCGATCGCGCAGAACCTCTCCATCGCCGGCCTCGCCGGGCCGCAAGCGCGC
ATCGTGCTGGAAAAACCGCTGGGCCATTCGCTGGACTCGGCGCGGGCGATCAACCAGTCCATCGGCCGGGTG
TTCGACGAGTCGCGGGTGTTCCGCATCGACCACTACCTGGGCAAGGAAACCGTGCAGAACCTGATGGCCCTG
CGCTTCGCCAATGCGTTGTTCGAGCCGGTCTGGCGCGCGGCGCACATCGACCATGTGCAGATCAGCGTCAAC
GAGACCCTTGGCGTGGAGAACCGCGGCGGCTACTACGACCACGCCGGGGCGATGCGCGACATGGTGCAGAAC
CATCTGCTCCAGTTGCTCTGCCTGGTGGCGATGGAGGCGCCGGTGCGTTTCGACGCCGAGGCTGTGCGCAAC
GAGAAGCTCAAGGTGCTGCAGGCGCTGAAGCCGATCTCCGGGCTCGACGTGCAGGACAAGACGGTACGCGGC
CAGTACGCCGCCGGCAGGATCGGCGGCCAGGAGGTGCCGGCGTACTACTTCGAGAAGAACGTCGACAACGAC
AGCGATACCGAGACCTTCGTCGCGCTCCAGGCCGAGGTCGAGAACTGGCGCTGGGCCGGGGTGCCGTTCTAC
CTGCGCACCGGCAAGCGCATGGCGCGCAAGTGCTCGGAAATCGTCATCCAGTTCAAGCCGGTGCCGCACAGC
CTGATCGACGGCGGCGGCGGGCCGGCCAACCGCCTGTGGATAAGGTTGCAGCCGGAGGAGCGGATCAGCGTG
CAACTGATGGCCAAGACCCCGGGCAAGGGCATGCAACTGGAACCGGTGGAGCTGGATCTCAACCTGGCCGAG
GCCCTCAGCCGCAACAAGCGGCGCTGGGACGCCTACGAACGCCTGCTGCTGGACGTGATCGAGGGCGACTCG
ACGCTGTTCATGCGCCGCGACGAGGTAGAGGCCGCCTGGGGCTGGGTCGACCCGATCCTCGCCGGCTGGCGC
GAGCACTACCAGAGCCCGCGGCCCTACCCGGCCGGCAGCAACGGCCCGGAACAGGCGCAACTGCTGCTGGAA
CTGCAGGGTCGACGCTGGCTGGAATGA
Translation:
MSTPATPTSCDILVFGGTGDLALHKLLPALYRLHREDRLPADTRIFALARSALDNAAFLALAERNVRAVVAR
SEFAAEQWKGFAARLDYLAMDASQSADFGRLARHLKSSEGRVLVHYLATSPSLFAPIAQNLSIAGLAGPQAR
IVLEKPLGHSLDSARAINQSIGRVFDESRVFRIDHYLGKETVQNLMALRFANALFEPVWRAAHIDHVQISVN
ETLGVENRGGYYDHAGAMRDMVQNHLLQLLCLVAMEAPVRFDAEAVRNEKLKVLQALKPISGLDVQDKTVRG
QYAAGRIGGQEVPAYYFEKNVDNDSDTETFVALQAEVENWRWAGVPFYLRTGKRMARKCSEIVIQFKPVPHS
LIDGGGGPANRLWIRLQPEERISVQLMAKTPGKGMQLEPVELDLNLAEALSRNKRRWDAYERLLLDVIEGDS
TLFMRRDEVEAAWGWVDPILAGWREHYQSPRPYPAGSNGPEQAQLLLELQGRRWLE*
AnnotationID:830GeneID:821
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:05
Gene Name:
Confidence Code:3
GeneProduct:putative glucose-6-phosphate dehydrogenase
Cell Localization:()
Synonyms:zwf
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02781,pfam00479
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70916.1|AE016735_9 (AE016794) glucose-6-phosphate 1-dehydrogenase [Pseudomonas putida
           KT2440]
          Length = 485

 Score =  702 bits (1811), Expect = 0.0
 Identities = 348/477 (72%), Positives = 401/477 (84%), Gaps = 3/477 (0%)

>dbj|BAB52795.1| (AP003009) glucose-6-phosphate 1-dehydrogenase [Mesorhizobium loti]
          Length = 489

 Score =  491 bits (1264), Expect = e-138
 Identities = 260/481 (54%), Positives = 333/481 (69%), Gaps = 8/481 (1%)

>emb|CAC45276.1| (AL591784) GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE PROTEIN
           [Sinorhizobium meliloti]
          Length = 491

 Score =  488 bits (1255), Expect = e-137
 Identities = 258/479 (53%), Positives = 326/479 (68%), Gaps = 6/479 (1%)






 
Structural Features:
pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal domain. 
CD-Length = 298 residues,  99.7% aligned
Score =  380 bits (976), Expect = 3e-106
Identities = 148/299 (49%), Positives = 192/299 (64%), Gaps = 2/299 (0%)

pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding domain.
CD-Length = 187 residues,  99.5% aligned
Score =  176 bits (449), Expect = 4e-45
Identities = 73/190 (38%), Positives = 104/190 (54%), Gaps = 11/190 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14229




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:821_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:821
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1479
                           PA5439_tr
                           translation of PA5439
                           488
                           99.99
                           99.99
                           0
                           2522.0
     

     
     
53707
                           gb|AAG08824.1|AE004956_8
                           (AE004956) probable glucose-6-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           488
                           99.79
                           99.99
                           0
                           2520.0
     

     
     
53708
                           gb|AAN70916.1|AE016735_9
                           (AE016794) glucose-6-phosphate 1-dehydrogenase [Pseudomonas putida KT2440]
                           493
                           70.99
                           81.94
                           13
                           1809.0
     

     
     
53709
                           gb|AAQ57824.1|
                           (AE016910) glucose-6-phosphate 1-dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           495
                           53.33
                           67.47
                           10
                           1293.0
     

     
     
53710
                           dbj|BAB52795.1|
                           (AP003009) glucose-6-phosphate 1-dehydrogenase [Mesorhizobium loti]
                           494
                           52.83
                           68.21
                           11
                           1271.0
     

     






      

          
GC ORFID: 43823How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5439Glimmer Score: 

          
Start: 5658751Stop: 5660217

          
Length: 1467


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5439 translation of PA5439Homolog Bit Score 976.0

          
Other Homologs:  t_PA3183 (ORF: BLASTX 466.0), psyr_15may02_Scaffold3_revised_gene4424 (ORF: BLASTX 455.0), psyr_15may02_Scaffold7_revised_gene7264 (ORF: BLASTX 358.0), t_PA5439 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGTACACCAGCCACTCCAACGTCCTGCGACATCCTGGTCTTCGGCGGTACCGGCGACCTGGCCCTGCAC 
AAGCTGCTGCCGGCGCTCTATCGCCTGCACCGGGAGGACCGCCTGCCGGCCGATACGCGGATCTTCGCCCTC 
GCCCGCAGCGCGCTGGACAACGCCGCCTTCCTCGCCCTCGCCGAGCGCAACGTCCGCGCGGTGGTGGCACGC 
AGCGAGTTCGCCGCCGAACAATGGAAAGGCTTCGCCGCGCGCCTCGACTACCTGGCCATGGACGCCTCGCAG 
AGCGCCGACTTCGGCCGTCTCGCGCGGCACCTGAAGAGCAGCGAGGGCCGGGTGCTGGTGCACTACCTGGCG 
ACCTCGCCGAGCCTGTTCGCGCCGATCGCGCAGAACCTCTCCATCGCCGGCCTCGCCGGGCCGCAAGCGCGC 
ATCGTGCTGGAAAAACCGCTGGGCCATTCGCTGGACTCGGCGCGGGCGATCAACCAGTCCATCGGCCGGGTG 
TTCGACGAGTCGCGGGTGTTCCGCATCGACCACTACCTGGGCAAGGAAACCGTGCAGAACCTGATGGCCCTG 
CGCTTCGCCAATGCGTTGTTCGAGCCGGTCTGGCGCGCGGCGCACATCGACCATGTGCAGATCAGCGTCAAC 
GAGACCCTTGGCGTGGAGAACCGCGGCGGCTACTACGACCACGCCGGGGCGATGCGCGACATGGTGCAGAAC 
CATCTGCTCCAGTTGCTCTGCCTGGTGGCGATGGAGGCGCCGGTGCGTTTCGACGCCGAGGCTGTGCGCAAC 
GAGAAGCTCAAGGTGCTGCAGGCGCTGAAGCCGATCTCCGGGCTCGACGTGCAGGACAAGACGGTACGCGGC 
CAGTACGCCGCCGGCAGGATCGGCGGCCAGGAGGTGCCGGCGTACTACTTCGAGAAGAACGTCGACAACGAC 
AGCGATACCGAGACCTTCGTCGCGCTCCAGGCCGAGGTCGAGAACTGGCGCTGGGCCGGGGTGCCGTTCTAC 
CTGCGCACCGGCAAGCGCATGGCGCGCAAGTGCTCGGAAATCGTCATCCAGTTCAAGCCGGTGCCGCACAGC 
CTGATCGACGGCGGCGGCGGGCCGGCCAACCGCCTGTGGATAAGGTTGCAGCCGGAGGAGCGGATCAGCGTG 
CAACTGATGGCCAAGACCCCGGGCAAGGGCATGCAACTGGAACCGGTGGAGCTGGATCTCAACCTGGCCGAG 
GCCCTCAGCCGCAACAAGCGGCGCTGGGACGCCTACGAACGCCTGCTGCTGGACGTGATCGAGGGCGACTCG 
ACGCTGTTCATGCGCCGCGACGAGGTAGAGGCCGCCTGGGGCTGGGTCGACCCGATCCTCGCCGGCTGGCGC 
GAGCACTACCAGAGCCCGCGGCCCTACCCGGCCGGCAGCAACGGCCCGGAACAGGCGCAACTGCTGCTGGAA 
CTGCAGGGTCGACGCTGGCTGGAATGA