Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG07510.1| AE004828_11 (AE004828) 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 485/486 (99%), Positives = 485/486 (99%)
Sequence:
ATGATCAAACACTGGATCAATGGCCGCGAGGTCGAAAGCAAGGACGTCTTCGAGAACTACAACCCGGCCACC
GGCGAGCTGATCGGCGAGGTCGCCAGCGGCGGCGCGGCGGAAATCGACGCGGCGGTGGCGGCGGCCCGGGAA
GCCTTCCCGAAATGGGCCAATACCCCGGCCAAGGAGCGCGCGCGCCTGATGCGCCGGCTCGGCGAGCTGATC
GACCGGAACGTGCCGCACCTGGCGGAACTGGAGACCCTCGACACCGGCCTGCCGATCCACCAGACGAAGAAT
GTGCTGATCCCGCGCGCCTCGCACAACTTCGAGTTCTTCGCCGAAGTCTGCACGCGGATGAACGGGCACAGC
TATCCGGTCGACGACCAGATGCTCAACTACACCCTGTACCAGCCGGTGGGCGTCTGTGGCCTGGTCTCGCCG
TGGAACGTACCGTTCATGACCGCCACCTGGAAGACCGCGCCGTGCCTGGCGCTGGGCAACACGGCGGTGCTG
AAGATGTCCGAGCTGTCGCCGCTGACCGCCAACGAGCTGGGCCGCCTGGTGCACGAGGCGGGCATTCCGCCG
GGGGTGTTCAACGTGGTCCAGGGCTACGGCGCCAGCGCCGGCGACGCGCTGGTTCGCCACCGCGACGTGCGC
GCGGTGTCCTTCACCGGCGGCACCGCCACCGGGCGACGAATCATGGAGGCGGCCGGCATCAAGAAATACTCG
ATGGAGCTGGGCGGCAAGTCGCCGGTGCTGGTCTTCGAGGACGCCGACCTCGAGCGGGCGCTGGACGCCGCG
CTGTTCACCATCTTCTCGCTGAACGGCGAGCGCTGCACCGCCGGCAGTCGCATCTTCGTCCAGGAAAGCGTC
TACCCGCAGTTCGTCGCCGAGTTCGCCGCGCGCGCCAGGCGCCTGATCGTCGGCGATCCGCAGGACCCGAAG
ACCCAGGTCGGCTCGATGATCACCCAGGCCCACTACGACAAGGTCACCGGCTACATCCGCATCGGCCTCGAG
GAAGGCGCCACCCTGGTGGCCGGCGGCCTGGAGCGTCCGACCGGCCTGCCGGCGCACCTGAGCAAGGGGCAG
TTCATCCAGCCCACGGTGTTCGCCGACGTGGACAACCGCATGCGCATCGCCCAGGAGGAGATCTTCGGCCCG
GTGGTCTGCCTAATCCCGTTCAAGGACGAAGCCGAGGCGCTGCGCCTGGCCAACGACGTGGAATACGGCCTG
GCCTCCTACATCTGGACCCAGGACATCGGCAAGGCCCATCGCCTGGCACGCGGCATCGAGGCCGGGATGGTC
TTCATCAACAGCCAGAACGTGCGCGACCTGCGCCAGCCGTTCGGCGGGGTGAAGGCCTCGGGCACCGGACGC
GAAGGCGGGGAATACAGCTTCGAGGTATTCGCCGAGATCAAGAACGTGTGTATATCCATGGGCAGCCATCAC
ATCCCCCGCTGGGGCGTGTAG
Translation:
MIKHWINGREVESKDVFENYNPATGELIGEVASGGAAEIDAAVAAAREAFPKWANTPAKERARLMRRLGELI
DRNVPHLAELETLDTGLPIHQTKNVLIPRASHNFEFFAEVCTRMNGHSYPVDDQMLNYTLYQPVGVCGLVSP
WNVPFMTATWKTAPCLALGNTAVLKMSELSPLTANELGRLVHEAGIPPGVFNVVQGYGASAGDALVRHRDVR
AVSFTGGTATGRRIMEAAGIKKYSMELGGKSPVLVFEDADLERALDAALFTIFSLNGERCTAGSRIFVQESV
YPQFVAEFAARARRLIVGDPQDPKTQVGSMITQAHYDKVTGYIRIGLEEGATLVAGGLERPTGLPAHLSKGQ
FIQPTVFADVDNRMRIAQEEIFGPVVCLIPFKDEAEALRLANDVEYGLASYIWTQDIGKAHRLARGIEAGMV
FINSQNVRDLRQPFGGVKASGTGREGGEYSFEVFAEIKNVCISMGSHHIPRWGV*
AnnotationID:829 GeneID:820
Modification Date/Time:
2005-03-30 13:01:05
GeneProduct: 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
Cell Localization Confidence Code: 5
Functional Category: (5) Carbon compound catabolism
Alternate Gene Product Name: 4-hydroxyphenylacetate catabolism protein
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAO17179.1| (AF346500) HpaE [Photorhabdus luminescens]
Length = 488
Score = 811 bits (2094), Expect = 0.0
Identities = 383/486 (78%), Positives = 435/486 (89%)
>gb|AAL20034.1| (AE008747) 4-hydroxyphenylacetate catabolism protein [Salmonella
typhimurium LT2]
Length = 488
Score = 810 bits (2093), Expect = 0.0
Identities = 388/485 (80%), Positives = 434/485 (89%)
>emb|CAA86041.1| (Z37980) 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase
[Escherichia coli]
Length = 488
Score = 806 bits (2081), Expect = 0.0
Identities = 386/485 (79%), Positives = 433/485 (89%)
Structural Features: pfam00171 , Aldedh, Aldehyde dehydrogenase family.
CD-Length = 464 residues, 99.6% aligned
Score = 535 bits (1381), Expect = 4e-153
Identities = 224/470 (47%), Positives = 305/470 (64%), Gaps = 11/470 (2%)
COG1012 , PutA, NAD-dependent aldehyde dehydrogenases
[Energy production and conversion]
CD-Length = 472 residues, 100.0% aligned
Score = 532 bits (1372), Expect = 3e-152
Identities = 236/482 (48%), Positives = 300/482 (62%), Gaps = 14/482 (2%)
GC ORFID: 43822 How Found: BLASTX
GC_TrimmedSeqID: 69 Blast Result ID
Subject Sequence Name: t_PA4123 Glimmer Score:
Start: 4037094 Stop: 4038554
Length: 1461
Start Codon: ATG Truncated Start:
Stop Codon: TAG Truncated Stop:
Homolog: t_PA4123 translation of PA4123 Homolog Bit Score 976.0
Other Homologs: t_PA5373 (ORF: BLASTX 369.0), psyr_15may02_Scaffold1_revised_gene155 (ORF: BLASTX 365.0), t_PA4022 (ORF: BLASTX 347.0), t_PA1984 (ORF: BLASTX 347.0), t_PA4073 (ORF: BLASTX 346.0), t_PA3504 (ORF: BLASTX 345.0), psyr_15may02_Scaffold2_revised_gene3624 (ORF: BLASTX 341.0), t_PA0219 (ORF: BLASTX 340.0), psyr_15may02_Scaffold2_revised_gene3988 (ORF: BLASTX 310.0), psyr_15may02_Scaffold2_revised_gene3643 (ORF: BLASTX 291.0), t_PA4123 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAAACACTGGATCAATGGCCGCGAGGTCGAAAGCAAGGACGTCTTCGAGAACTACAACCCGGCCACC GGCGAGCTGATCGGCGAGGTCGCCAGCGGCGGCGCGGCGGAAATCGACGCGGCGGTGGCGGCGGCCCGGGAA GCCTTCCCGAAATGGGCCAATACCCCGGCCAAGGAGCGCGCGCGCCTGATGCGCCGGCTCGGCGAGCTGATC GACCGGAACGTGCCGCACCTGGCGGAACTGGAGACCCTCGACACCGGCCTGCCGATCCACCAGACGAAGAAT GTGCTGATCCCGCGCGCCTCGCACAACTTCGAGTTCTTCGCCGAAGTCTGCACGCGGATGAACGGGCACAGC TATCCGGTCGACGACCAGATGCTCAACTACACCCTGTACCAGCCGGTGGGCGTCTGTGGCCTGGTCTCGCCG TGGAACGTACCGTTCATGACCGCCACCTGGAAGACCGCGCCGTGCCTGGCGCTGGGCAACACGGCGGTGCTG AAGATGTCCGAGCTGTCGCCGCTGACCGCCAACGAGCTGGGCCGCCTGGTGCACGAGGCGGGCATTCCGCCG GGGGTGTTCAACGTGGTCCAGGGCTACGGCGCCAGCGCCGGCGACGCGCTGGTTCGCCACCGCGACGTGCGC GCGGTGTCCTTCACCGGCGGCACCGCCACCGGGCGACGAATCATGGAGGCGGCCGGCATCAAGAAATACTCG ATGGAGCTGGGCGGCAAGTCGCCGGTGCTGGTCTTCGAGGACGCCGACCTCGAGCGGGCGCTGGACGCCGCG CTGTTCACCATCTTCTCGCTGAACGGCGAGCGCTGCACCGCCGGCAGTCGCATCTTCGTCCAGGAAAGCGTC TACCCGCAGTTCGTCGCCGAGTTCGCCGCGCGCGCCAGGCGCCTGATCGTCGGCGATCCGCAGGACCCGAAG ACCCAGGTCGGCTCGATGATCACCCAGGCCCACTACGACAAGGTCACCGGCTACATCCGCATCGGCCTCGAG GAAGGCGCCACCCTGGTGGCCGGCGGCCTGGAGCGTCCGACCGGCCTGCCGGCGCACCTGAGCAAGGGGCAG TTCATCCAGCCCACGGTGTTCGCCGACGTGGACAACCGCATGCGCATCGCCCAGGAGGAGATCTTCGGCCCG GTGGTCTGCCTAATCCCGTTCAAGGACGAAGCCGAGGCGCTGCGCCTGGCCAACGACGTGGAATACGGCCTG GCCTCCTACATCTGGACCCAGGACATCGGCAAGGCCCATCGCCTGGCACGCGGCATCGAGGCCGGGATGGTC TTCATCAACAGCCAGAACGTGCGCGACCTGCGCCAGCCGTTCGGCGGGGTGAAGGCCTCGGGCACCGGACGC GAAGGCGGGGAATACAGCTTCGAGGTATTCGCCGAGATCAAGAACGTGTGTATATCCATGGGCAGCCATCAC ATCCCCCGCTGGGGCGTGTAG