ViewGene
Locus Name:
GeneID:
Location:

GeneID:82
TrivialName: PA14_61150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61150
PAO1 Ortholog Locus:PA4621
Sequence Length:2832
Protein Length:943
Start: 5454727
Stop: 5451896
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08009.1|AE004876_4 (AE004876) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 939/943 (99%), Positives = 941/943 (99%)
Sequence:
ATGTCCAACCGTGATATATCCCGGCGCGCCTTTCTCCAGGGCGGGTTGATCGCCGGCGTGGGTGTCACCCTG
GCGCCGCTCGGCAGCCAGGCGTTCGCTGCCTTGTTCGAGAACCAGGTGACCGTTTCCGCCCAGCGCTGGATG
GCGGGCAACGGCCAGGTCCGTTTCCGTAACGACGCCTTGTCCAAGGTCTGCGGCAACAAGGTGTTCGCCCGC
GATATCCGCGCCAGGGACATGCCCGGCTGGCCGCAGCAGCAAGGCCACGCCATGTTGCTGAAGACCGTTCGC
GCCGACCGCATCTACGAAGGCCACGACCTTTCCTGGCTGGGCGCCGAATTGCAGCCGGACCGTATCGTCACC
GCCGCCGACCTGGAGAAGGACGGCATCGTCTTCCCCGAGGCGCATTCGCCCGATCCGCTCCTGCCGCCGGGC
AAGGTGCCGATGTTCATCGGCCATCCGGTAGCGATCCTGATCTGGAACGACTTCGAGCGCTTCCGCCGGGCC
AAGCTCAAGCTCAAGTTCAACGACAAGGCGGTCCGCTATGGCGCCCAGGCCCCGCTGTACCAGGGCGATCCC
TACGGCAGCTATCGCTTCGTCCGGGTCGGCGGCAAGACGCCCTACGAGGACGACGAGTTCTCCAGCCTGAAG
GACTCGATGCTGTTCCCCACCATCCTCAACCGCAAACCGGTATGGACCCGCGAGCCGAAGCTGCACGGCGAC
CTCACCGAGCAGGGGCTGTTCCATGCCAAGCGCATGGCCGAGCAACTGGAAAACCCGCCGCAGGACTGGCTG
GTCTTCGACGAGCGCTATAAGACCCCATCGATCGAGCCGGCGGCATTGGAGCCGGACAACGGCAACGGCTGG
TACGACGCGGCCAGCAAGACCTTGCACTTCGTGGTCGCCACCCAGTGCCCGTTCGAAGTCGCCTACGAAAGC
GTGCACATGATCAAGCCGTCGCGCTTCGCCCTGGAGAAGCTCAACATCCATCCGGGCTATACCGTCGGCTAC
GGCTCCAAGGACAACAACATCTTCGTCTTCTATGCCGCGCTCGCCGCGCTGTATGGCGAGGGTGTGCCGGTG
CGCCTGGCCAATGACCGCTACGAGCAGTTCCAGAGCGGCATCAAGCGCCACCCGTTCGACATCCGCTACCAA
CTGGCGGTAGACAGGAACGACCTCGGCTTCCGCATCTTCCGCGCCGACATGAGCGCCGACGGCGGCGGTCGC
GCCAACTACAGCGCCTCGGTGGCGGCGGTGGGCGCCACCGCCGCGCAGTCGACCTACTACATGCCGCAGAAC
GACCTGGCGGTCACCGCCTATCATTCGCGCGGCGTGGAGGCCGGCTCGATGCGCGGCTACGGTACCCTGCAG
ACCATGGCCGCGACCGAGATGATGGTCGACGAGATCGCTGGCCGGCTGGGCGTCGACGCCATCGACCTGCGT
CGTCGCAACGCCCTGCGCTCGGGCATGAAGAACACCCAGGGCGCGGTCCCGGCCGGTGCCCTGCGCCTGCAC
GAGATCCTCGACAAGGCCGCTGCCCACGAGGTGTGGAAGGACCGCGACGCACGCAAGAAGCGCTTCGACGCG
GAGGACCCGGACAACTGGTATGGGGTCGGCTTCGCCATTTGCCAGAAGGACTTCGGCACCGGTGCCGAGGCG
CCGATGGCGAGCATCGAGTTCAGCGCCGACGGGCGCATCAGCCTGCGCCACATCGGCACCGAGATCGGTACC
GGGATGTCCACCTCGCAGGCCTTCGTGGTCGGCGACTTCCTCGGCCGTCCGGCGGACGAGGTGAAGACCGCC
GAGACCGAATGGCCCGAGCTGCGGCTCACCACCAAGGGCAATCCCTACCTGATGAGCCAGGCCGAGCAGGAC
GCCGCGCTACGCGATCCGCGCTGGGTCGGCAAGCTGGCCTCGCCGTCGTCGGCGACCAACTCGGCGTTCTAT
TTCAGCCACGCCACCCGCGAAGCCGCGCGCGTGCTGTTCAACCACGGCCTGTGGCCGGCGGCCCTGGCGCTG
TGGCGCAGCGGTCCGTTCGGCGGCCAGGCCAATCCCTATGTGGTGCGCCGCGAAAACGCGGTATGGGTCGAC
GGCCAGTTGACCGGCAACGGCCTGGCGCCGATTCCCTTCGCCGAGCTGGCGAAGAAGGCCCACGAGATGGGC
CTGGTCACCGGCGTCAGCGTCCACGGTTTCAACCGCTGGAGCTGGGCCGAAGCGGACTTCGTCATCGATGGC
GTACGCGAACGCCTGCCGCTCGACGCCATGGCGGTGAAGTACGGCGACGGTGCGCCGGGAGTGAAGAAGGCG
ATGATGAACAGCGCCGGCTTCCACCTGCTCGACCGGCAGAATCCGGCTTATCCGGCGACCCAGCTGAACAAC
GCGATGGTCACCTACTACAGCCCGGTGGCGACCCTGGTCGAGCTGAAGGTGAACAAGGGCAGCGGCGAGGTG
CAGGTGCTCGATCACCATTCCTGGATCGAGTGCGGCCGGGTGCTGGTGCCAGAGCTGGTCAAGGGCCAGCTG
GAGGGCGGCATCGCCATGGGTATCGGCCATGCGCTGCTGGAGGAAATGCCGCTCTACGAGGGCGGCCCCGCG
GAAGGGGACTGGAACTTCAACCGCTACCGGTTGCCGCGGGCGAAGGACGTGGCGGTGTGGAACCAGACGGCG
GAGATCCTCCCGCCGCTGTCACCGACCGATCCGGCCAAGGGCATCGCCGAGGTGGTGATGATCCCGGTGGTC
GGCGCCATCGCCAACGCCGTGGCGCACGCCACCGGCAAGCGCGTCCGCGACCTGCCCATCACTCCCGCCCGC
ATCAAGGAGGCCCTCCATGGCTAA
Translation:
MSNRDISRRAFLQGGLIAGVGVTLAPLGSQAFAALFENQVTVSAQRWMAGNGQVRFRNDALSKVCGNKVFAR
DIRARDMPGWPQQQGHAMLLKTVRADRIYEGHDLSWLGAELQPDRIVTAADLEKDGIVFPEAHSPDPLLPPG
KVPMFIGHPVAILIWNDFERFRRAKLKLKFNDKAVRYGAQAPLYQGDPYGSYRFVRVGGKTPYEDDEFSSLK
DSMLFPTILNRKPVWTREPKLHGDLTEQGLFHAKRMAEQLENPPQDWLVFDERYKTPSIEPAALEPDNGNGW
YDAASKTLHFVVATQCPFEVAYESVHMIKPSRFALEKLNIHPGYTVGYGSKDNNIFVFYAALAALYGEGVPV
RLANDRYEQFQSGIKRHPFDIRYQLAVDRNDLGFRIFRADMSADGGGRANYSASVAAVGATAAQSTYYMPQN
DLAVTAYHSRGVEAGSMRGYGTLQTMAATEMMVDEIAGRLGVDAIDLRRRNALRSGMKNTQGAVPAGALRLH
EILDKAAAHEVWKDRDARKKRFDAEDPDNWYGVGFAICQKDFGTGAEAPMASIEFSADGRISLRHIGTEIGT
GMSTSQAFVVGDFLGRPADEVKTAETEWPELRLTTKGNPYLMSQAEQDAALRDPRWVGKLASPSSATNSAFY
FSHATREAARVLFNHGLWPAALALWRSGPFGGQANPYVVRRENAVWVDGQLTGNGLAPIPFAELAKKAHEMG
LVTGVSVHGFNRWSWAEADFVIDGVRERLPLDAMAVKYGDGAPGVKKAMMNSAGFHLLDRQNPAYPATQLNN
AMVTYYSPVATLVELKVNKGSGEVQVLDHHSWIECGRVLVPELVKGQLEGGIAMGIGHALLEEMPLYEGGPA
EGDWNFNRYRLPRAKDVAVWNQTAEILPPLSPTDPAKGIAEVVMIPVVGAIANAVAHATGKRVRDLPITPAR
IKEALHG*
AnnotationID:92GeneID:82
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 09:09:23
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4621
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1529,pfam02738
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB51437.1| (AP003005) aldehyde oxidoreductase [Mesorhizobium loti]
          Length = 774

 Score =  118 bits (296), Expect = 2e-25
 Identities = 101/337 (29%), Positives = 152/337 (45%), Gaps = 16/337 (4%)






 
Structural Features:
COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, 
large subunit CoxL/CutL homologs 
[Energy production and conversion]
CD-Length = 731 residues,  79.9% aligned
Score =  257 bits (657), Expect = 1e-68
Identities = 156/687 (22%), Positives = 232/687 (33%), Gaps = 105/687 (15%)

pfam02738, Ald_Xan_dh_C2, Aldehyde oxidase and xanthine dehydrogenase, 
molybdopterin binding domain.
CD-Length = 549 residues,  75.0% aligned
Score =  148 bits (376), Expect = 5e-36
Identities = 106/449 (23%), Positives = 165/449 (36%), Gaps = 44/449 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31601




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:82_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:82
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
159
                           PA4621_tr
                           translation of PA4621
                           943
                           99.57
                           99.78
                           0
                           4953.0
     

     
     
13804
                           gb|AAG08009.1|AE004876_4
                           (AE004876) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           943
                           99.57
                           99.78
                           0
                           4953.0
     

     






      

          
GC ORFID: 43084How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4621Glimmer Score: 

          
Start: 4718407Stop: 4715576

          
Length: 2832


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4621 translation of PA4621Homolog Bit Score 1912.0

          
Other Homologs:  t_PA4621 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAACCGTGATATATCCCGGCGCGCCTTTCTCCAGGGCGGGTTGATCGCCGGCGTGGGTGTCACCCTG 
GCGCCGCTCGGCAGCCAGGCGTTCGCTGCCTTGTTCGAGAACCAGGTGACCGTTTCCGCCCAGCGCTGGATG 
GCGGGCAACGGCCAGGTCCGTTTCCGTAACGACGCCTTGTCCAAGGTCTGCGGCAACAAGGTGTTCGCCCGC 
GATATCCGCGCCAGGGACATGCCCGGCTGGCCGCAGCAGCAAGGCCACGCCATGTTGCTGAAGACCGTTCGC 
GCCGACCGCATCTACGAAGGCCACGACCTTTCCTGGCTGGGCGCCGAATTGCAGCCGGACCGTATCGTCACC 
GCCGCCGACCTGGAGAAGGACGGCATCGTCTTCCCCGAGGCGCATTCGCCCGATCCGCTCCTGCCGCCGGGC 
AAGGTGCCGATGTTCATCGGCCATCCGGTAGCGATCCTGATCTGGAACGACTTCGAGCGCTTCCGCCGGGCC 
AAGCTCAAGCTCAAGTTCAACGACAAGGCGGTCCGCTATGGCGCCCAGGCCCCGCTGTACCAGGGCGATCCC 
TACGGCAGCTATCGCTTCGTCCGGGTCGGCGGCAAGACGCCCTACGAGGACGACGAGTTCTCCAGCCTGAAG 
GACTCGATGCTGTTCCCCACCATCCTCAACCGCAAACCGGTATGGACCCGCGAGCCGAAGCTGCACGGCGAC 
CTCACCGAGCAGGGGCTGTTCCATGCCAAGCGCATGGCCGAGCAACTGGAAAACCCGCCGCAGGACTGGCTG 
GTCTTCGACGAGCGCTATAAGACCCCATCGATCGAGCCGGCGGCATTGGAGCCGGACAACGGCAACGGCTGG 
TACGACGCGGCCAGCAAGACCTTGCACTTCGTGGTCGCCACCCAGTGCCCGTTCGAAGTCGCCTACGAAAGC 
GTGCACATGATCAAGCCGTCGCGCTTCGCCCTGGAGAAGCTCAACATCCATCCGGGCTATACCGTCGGCTAC 
GGCTCCAAGGACAACAACATCTTCGTCTTCTATGCCGCGCTCGCCGCGCTGTATGGCGAGGGTGTGCCGGTG 
CGCCTGGCCAATGACCGCTACGAGCAGTTCCAGAGCGGCATCAAGCGCCACCCGTTCGACATCCGCTACCAA 
CTGGCGGTAGACAGGAACGACCTCGGCTTCCGCATCTTCCGCGCCGACATGAGCGCCGACGGCGGCGGTCGC 
GCCAACTACAGCGCCTCGGTGGCGGCGGTGGGCGCCACCGCCGCGCAGTCGACCTACTACATGCCGCAGAAC 
GACCTGGCGGTCACCGCCTATCATTCGCGCGGCGTGGAGGCCGGCTCGATGCGCGGCTACGGTACCCTGCAG 
ACCATGGCCGCGACCGAGATGATGGTCGACGAGATCGCTGGCCGGCTGGGCGTCGACGCCATCGACCTGCGT 
CGTCGCAACGCCCTGCGCTCGGGCATGAAGAACACCCAGGGCGCGGTCCCGGCCGGTGCCCTGCGCCTGCAC 
GAGATCCTCGACAAGGCCGCTGCCCACGAGGTGTGGAAGGACCGCGACGCACGCAAGAAGCGCTTCGACGCG 
GAGGACCCGGACAACTGGTATGGGGTCGGCTTCGCCATTTGCCAGAAGGACTTCGGCACCGGTGCCGAGGCG 
CCGATGGCGAGCATCGAGTTCAGCGCCGACGGGCGCATCAGCCTGCGCCACATCGGCACCGAGATCGGTACC 
GGGATGTCCACCTCGCAGGCCTTCGTGGTCGGCGACTTCCTCGGCCGTCCGGCGGACGAGGTGAAGACCGCC 
GAGACCGAATGGCCCGAGCTGCGGCTCACCACCAAGGGCAATCCCTACCTGATGAGCCAGGCCGAGCAGGAC 
GCCGCGCTACGCGATCCGCGCTGGGTCGGCAAGCTGGCCTCGCCGTCGTCGGCGACCAACTCGGCGTTCTAT 
TTCAGCCACGCCACCCGCGAAGCCGCGCGCGTGCTGTTCAACCACGGCCTGTGGCCGGCGGCCCTGGCGCTG 
TGGCGCAGCGGTCCGTTCGGCGGCCAGGCCAATCCCTATGTGGTGCGCCGCGAAAACGCGGTATGGGTCGAC 
GGCCAGTTGACCGGCAACGGCCTGGCGCCGATTCCCTTCGCCGAGCTGGCGAAGAAGGCCCACGAGATGGGC 
CTGGTCACCGGCGTCAGCGTCCACGGTTTCAACCGCTGGAGCTGGGCCGAAGCGGACTTCGTCATCGATGGC 
GTACGCGAACGCCTGCCGCTCGACGCCATGGCGGTGAAGTACGGCGACGGTGCGCCGGGAGTGAAGAAGGCG 
ATGATGAACAGCGCCGGCTTCCACCTGCTCGACCGGCAGAATCCGGCTTATCCGGCGACCCAGCTGAACAAC 
GCGATGGTCACCTACTACAGCCCGGTGGCGACCCTGGTCGAGCTGAAGGTGAACAAGGGCAGCGGCGAGGTG 
CAGGTGCTCGATCACCATTCCTGGATCGAGTGCGGCCGGGTGCTGGTGCCAGAGCTGGTCAAGGGCCAGCTG 
GAGGGCGGCATCGCCATGGGTATCGGCCATGCGCTGCTGGAGGAAATGCCGCTCTACGAGGGCGGCCCCGCG 
GAAGGGGACTGGAACTTCAACCGCTACCGGTTGCCGCGGGCGAAGGACGTGGCGGTGTGGAACCAGACGGCG 
GAGATCCTCCCGCCGCTGTCACCGACCGATCCGGCCAAGGGCATCGCCGAGGTGGTGATGATCCCGGTGGTC 
GGCGCCATCGCCAACGCCGTGGCGCACGCCACCGGCAAGCGCGTCCGCGACCTGCCCATCACTCCCGCCCGC 
ATCAAGGAGGCCCTCCATGGCTAA