ViewGene
Locus Name:
GeneID:
Location:

GeneID:817
TrivialName: PA14_66410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66410
PAO1 Ortholog Locus:PA5023
Sequence Length:1461
Protein Length:486
Start: 5924342
Stop: 5925802
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08408.1|AE004915_3 (AE004915) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 483/486 (99%), Positives = 483/486 (99%)
Sequence:
TTGAAATCACTCGACGACCTCGACTTCGACAACCGCTTCGCCCGCCTGGGCGACGCCTTCTCCACCGAAGTC
CTGCCCGACCCCATCGCCGAGCCGCGCCTGGTGGTAGCCAGCCCCGCCGCCCTGGCGCTGCTCGACCTGCCA
GCGGAAACCAGTGACGAAGCGCTGTTCGCCGAGCTGTTCGGCGGGCACAAGCTGTGGTCGGAGGCCGAGCCG
CGGGCGATGGTGTATTCCGGCCACCAGTTCGGCTCCTATAACCCGCGCCTGGGCGACGGCCGCGGCCTGCTG
CTCGGCGAGGTGATCAACCAGGCCGGCGAGCACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACCCCCTAC
TCGCGGATGGGCGACGGCCGCGCCGTGCTGCGCTCGTCGATCCGCGAGTTCCTCGCCTCCGAAGCCCTTCCG
GCACTGGGCATTCCCAGCAGCCGGGCGCTCTGCGTGATCGGTTCGAGCACGCCGGTCTGGCGCGAGAAGAAG
GAAAGCGCGGCGACGCTGCTGCGCCTGGCGCCCAGCCACGTGCGCTTCGGTCACTTCGAATACTTCTACTAC
ACCCGCCAGCACGACCAGTTGAAACAGTTGGCGGCGTTCGTCCAGGAACACCACTTCGCCGACTGCAACGCA
GCCGAGCGGCCGTACGCGGCGATGTTCCGCCAGGTCGTCGAGCGCAACGCCGAACTCATCGCCCGCTGGCAG
GCCTATGGCTTCTGCCACGGGGTGATGAACACCGACAACATGTCGATCCTCGGCATTACCTTCGACTACGGG
CCCTACGCCTTCCTCGACGATTTCGACGCCAATCACATCTGCAATCACTCCGACGACGCCGGCCGCTACTCC
TTCAGCAACCAGGTACCGATCGCCCATTGGAACCTGGCCGCCCTGGCCCAGGCGCTGACGCCACTGGTGGAA
GTGGACGAACTGCGCGCCAGCCTCGACCTGTTCCTACCCCTCTACCAGGCCCACTACCTCGACCTGATGCGC
CGGCGCCTGGGCCTGGGCGTCGCCGCGGAGAACGACCAGGCCCTGGTCCAGGAACTGTTGCAGCGCATGCAG
GGCAGCGCGGTGGATTACTCGCTGTTCTTCCGCCGACTCGGCGAGGAGACTCCGGAGCGGGCGCTGGCCAGC
CTGCGCGACGACTTCGTCGACCGCGAGGCCTTTGACCGCTGGGCCGAGGCCTACCGCCGGCGCGTCGAGGAA
GAAGGCGGAGACCAGGAGTCGCGGCGCCGGCGCATGCACGCGGTCAATCCGCTCTATGTGCTACGCAACTAC
CTGGCACAGCAGGCTATCGAAGCGGCCGAGCAGGGCGACTACACGGAAGTCCGCTTGCTGCACCAGGTGCTG
AGTCGCCCGTTCGAGGAACAGCCGGGCATGGAGCGCTTCACTCGGCGCCCACCGGACTGGGGGCGGCACCTG
GAAATCAGTTGCTCCTCCTGA
Translation:
MKSLDDLDFDNRFARLGDAFSTEVLPDPIAEPRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEP
RAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALP
ALGIPSSRALCVIGSSTPVWREKKESAATLLRLAPSHVRFGHFEYFYYTRQHDQLKQLAAFVQEHHFADCNA
AERPYAAMFRQVVERNAELIARWQAYGFCHGVMNTDNMSILGITFDYGPYAFLDDFDANHICNHSDDAGRYS
FSNQVPIAHWNLAALAQALTPLVEVDELRASLDLFLPLYQAHYLDLMRRRLGLGVAAENDQALVQELLQRMQ
GSAVDYSLFFRRLGEETPERALASLRDDFVDREAFDRWAEAYRRRVEEEGGDQESRRRRMHAVNPLYVLRNY
LAQQAIEAAEQGDYTEVRLLHQVLSRPFEEQPGMERFTRRPPDWGRHLEISCSS*
AnnotationID:826GeneID:817
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 12:12:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5023
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14227




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18779




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35009




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:817_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:817
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1469
                           PA5023_tr
                           translation of PA5023
                           486
                           99.38
                           99.38
                           0
                           2526.0
     

     
     
53475
                           gb|AAG08408.1|AE004915_3
                           (AE004915) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           486
                           99.17
                           99.38
                           0
                           2524.0
     

     
     
53477
                           gb|AAO58456.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           487
                           74.12
                           83.77
                           1
                           1909.0
     

     
     
53476
                           gb|AAN70633.1|AE016707_3
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           540
                           67.77
                           75.92
                           54
                           1945.0
     

     
     
53478
                           dbj|BAC59172.1|
                           (AP005076) conserved hypothetical protein [Vibrio parahaemolyticus]
                           494
                           49.79
                           65.58
                           13
                           1220.0
     

     






      

          
GC ORFID: 43819How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5023Glimmer Score: 

          
Start: 5188025Stop: 5189485

          
Length: 1461


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5023 translation of PA5023Homolog Bit Score 977.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3706 (ORF: BLASTX 736.0), t_PA5023 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAAATCACTCGACGACCTCGACTTCGACAACCGCTTCGCCCGCCTGGGCGACGCCTTCTCCACCGAAGTC 
CTGCCCGACCCCATCGCCGAGCCGCGCCTGGTGGTAGCCAGCCCCGCCGCCCTGGCGCTGCTCGACCTGCCA 
GCGGAAACCAGTGACGAAGCGCTGTTCGCCGAGCTGTTCGGCGGGCACAAGCTGTGGTCGGAGGCCGAGCCG 
CGGGCGATGGTGTATTCCGGCCACCAGTTCGGCTCCTATAACCCGCGCCTGGGCGACGGCCGCGGCCTGCTG 
CTCGGCGAGGTGATCAACCAGGCCGGCGAGCACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACCCCCTAC 
TCGCGGATGGGCGACGGCCGCGCCGTGCTGCGCTCGTCGATCCGCGAGTTCCTCGCCTCCGAAGCCCTTCCG 
GCACTGGGCATTCCCAGCAGCCGGGCGCTCTGCGTGATCGGTTCGAGCACGCCGGTCTGGCGCGAGAAGAAG 
GAAAGCGCGGCGACGCTGCTGCGCCTGGCGCCCAGCCACGTGCGCTTCGGTCACTTCGAATACTTCTACTAC 
ACCCGCCAGCACGACCAGTTGAAACAGTTGGCGGCGTTCGTCCAGGAACACCACTTCGCCGACTGCAACGCA 
GCCGAGCGGCCGTACGCGGCGATGTTCCGCCAGGTCGTCGAGCGCAACGCCGAACTCATCGCCCGCTGGCAG 
GCCTATGGCTTCTGCCACGGGGTGATGAACACCGACAACATGTCGATCCTCGGCATTACCTTCGACTACGGG 
CCCTACGCCTTCCTCGACGATTTCGACGCCAATCACATCTGCAATCACTCCGACGACGCCGGCCGCTACTCC 
TTCAGCAACCAGGTACCGATCGCCCATTGGAACCTGGCCGCCCTGGCCCAGGCGCTGACGCCACTGGTGGAA 
GTGGACGAACTGCGCGCCAGCCTCGACCTGTTCCTACCCCTCTACCAGGCCCACTACCTCGACCTGATGCGC 
CGGCGCCTGGGCCTGGGCGTCGCCGCGGAGAACGACCAGGCCCTGGTCCAGGAACTGTTGCAGCGCATGCAG 
GGCAGCGCGGTGGATTACTCGCTGTTCTTCCGCCGACTCGGCGAGGAGACTCCGGAGCGGGCGCTGGCCAGC 
CTGCGCGACGACTTCGTCGACCGCGAGGCCTTTGACCGCTGGGCCGAGGCCTACCGCCGGCGCGTCGAGGAA 
GAAGGCGGAGACCAGGAGTCGCGGCGCCGGCGCATGCACGCGGTCAATCCGCTCTATGTGCTACGCAACTAC 
CTGGCACAGCAGGCTATCGAAGCGGCCGAGCAGGGCGACTACACGGAAGTCCGCTTGCTGCACCAGGTGCTG 
AGTCGCCCGTTCGAGGAACAGCCGGGCATGGAGCGCTTCACTCGGCGCCCACCGGACTGGGGGCGGCACCTG 
GAAATCAGTTGCTCCTCCTGA