ViewGene

Locus Name:
GeneID:
Location:

GeneID:815
TrivialName: PA14_38010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38010
PAO1 Ortholog Locus:PA2049
Sequence Length:1434
Protein Length:477
Start: 3390598
Stop: 3392031
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05437.1|AE004631_6 (AE004631) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 471/477 (98%), Positives = 473/477 (99%)
Sequence:
ATGCTGGTGGCCATCCATGGGCTGATCCGCCGCCTCGGCCTGTACGGCGAACACCTGGAAGGCGCGCTGGTG
GACGACAGCGAGGCGCTCTACGCACACCCGGCCACCTACTACCGGCGCGAGGACCTGCTGCCCGCCTTCAAG
TCCAACGAAGCCCTGCGCGAGCGCTTCTTCGGCGGGGTGAAGAAGCCGATCTTCACCTCGGCCAACGCCCAC
AACCATCTGGTCGGCCTGGCCGAGGTGCTGGCGATGTACCTGCTGGTCTGGTCGCCGGCGCCCTGGCGCCTG
GTCAGGCTGGAACCGCCGCCGGGGCTGGATGCGCGGCACGCGCAGCGCTTCGCCGACGAGCGCCGGCACATC
GAAGCCTTCCGCGATGGCCTGCCCGGCGTGGCGCGGGCACTGGCGCATATCTCGTCGCTGATGATCTTCGAC
GACCACGACATCACCGACGACTGGAACCTTTCCGCGCGCTGGGAGCTGACCGCCTACGGCCATCCGTTCTCC
CGGCGGATCATCGGCAACGCCCTGCTCGCCTACCTGCTCTGCCAGGGCTGGGGCAACGACCCGCAGCATTGC
GGCGAATGGCTGGCGCCGGTCGCGGCCCTGATGGAGGGCGCCGCGGCAGACGGCCGGCTGCCCTGCGCCGAG
CAGGACCGCCTGCTCGATGCCCTGCTCGACTTCCAGCACTGGCACTACCGGTTGCCTGGCAGCCCGACCCTG
ATCGTCCTCGACACGCGCACCCGCCGCTGGCGCAGCGAGCGCAACCTGGGCCGGCCCTCCGGGCTGATGGAC
TGGGAGGCGCTGAGTGAACTCCAGCAGGACCTGCTCGGCGAAAAGGCGGCGATCATCGTGTCGCCGGCGCCG
ATGTTCGGGGTCAAGCTGATCGAGGGCGTGCAGAAGCTCTTCAGCTGGATCGGCCAGCCGCTGCTGGTCGAT
GCGGAAAACTGGATGGCCCATCGCGGCGCGGCCTCGGTGATGATGAATATCTTCCGCCACTCGCGCACGCCG
GGTAACTACCTGATCCTTTCCGGCGACGTGCATTACTCCTTCGTCTACGACATCCGGATTCGCCACCGCGAG
CGCGGGCCCCGGCTCTGGCAGATCACCAGCAGCGGGATCAAGAACGAATTCCCGCGACGCCTGCTGGACTGG
TTCGACCGCCTCAACCGCTGGCTCTATGCGCCCTGGTCGCCACTGAACTGGCTGACCCAGCGGCGCAGCCTG
GAAATCCGCCCGCGCGTTCCGCAGCACAGCCAGGCCGGCGAGCGCCTGTGGAACAGCGCCGGGATCGGCCAG
GTATTCATTGGCGAGGACGGCCGTCCGCGCGCGGTGTTGCAGGTCAATGCCGATGGCTCGCCGGCGACCGCC
TTCGAGCGACATCGCGACGTCGAAGACGAACGAGCGGACCAGTCGCCGGTCGCGCCGGGTCGCTGA
Translation:
MLVAIHGLIRRLGLYGEHLEGALVDDSEALYAHPATYYRREDLLPAFKSNEALRERFFGGVKKPIFTSANAH
NHLVGLAEVLAMYLLVWSPAPWRLVRLEPPPGLDARHAQRFADERRHIEAFRDGLPGVARALAHISSLMIFD
DHDITDDWNLSARWELTAYGHPFSRRIIGNALLAYLLCQGWGNDPQHCGEWLAPVAALMEGAAADGRLPCAE
QDRLLDALLDFQHWHYRLPGSPTLIVLDTRTRRWRSERNLGRPSGLMDWEALSELQQDLLGEKAAIIVSPAP
MFGVKLIEGVQKLFSWIGQPLLVDAENWMAHRGAASVMMNIFRHSRTPGNYLILSGDVHYSFVYDIRIRHRE
RGPRLWQITSSGIKNEFPRRLLDWFDRLNRWLYAPWSPLNWLTQRRSLEIRPRVPQHSQAGERLWNSAGIGQ
VFIGEDGRPRAVLQVNADGSPATAFERHRDVEDERADQSPVAPGR*
AnnotationID:824GeneID:815
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2049
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:1633
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18775
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:815

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1466 PA2049_tr translation of PA2049 477 98.74 99.16 0 2525.0
53378 gb|AAG05437.1|AE004631_6 (AE004631) hypothetical protein PA2049 [Pseudomonas aeruginosa PAO1] 477 98.74 99.16 0 2525.0
53380 gb|AAN67780.1|AE016409_6 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 642 47.66 54.51 191 1638.0
53379 gb|AAO54535.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 673 47.10 55.57 198 1689.0
53381 gb|AAN57149.1|AE015850_1 (AE015850) conserved hypothetical protein [Shewanella oneidensis MR-1] 601 39.43 51.41 148 1132.0
GC ORFID: 43817How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2049Glimmer Score:
Start: 1563312Stop: 1561879
Length: 1434
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2049 translation of PA2049Homolog Bit Score 977.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5151 (ORF: BLASTX 702.0), t_PA2049 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGTGGCCATCCATGGGCTGATCCGCCGCCTCGGCCTGTACGGCGAACACCTGGAAGGCGCGCTGGTG
GACGACAGCGAGGCGCTCTACGCACACCCGGCCACCTACTACCGGCGCGAGGACCTGCTGCCCGCCTTCAAG
TCCAACGAAGCCCTGCGCGAGCGCTTCTTCGGCGGGGTGAAGAAGCCGATCTTCACCTCGGCCAACGCCCAC
AACCATCTGGTCGGCCTGGCCGAGGTGCTGGCGATGTACCTGCTGGTCTGGTCGCCGGCGCCCTGGCGCCTG
GTCAGGCTGGAACCGCCGCCGGGGCTGGATGCGCGGCACGCGCAGCGCTTCGCCGACGAGCGCCGGCACATC
GAAGCCTTCCGCGATGGCCTGCCCGGCGTGGCGCGGGCACTGGCGCATATCTCGTCGCTGATGATCTTCGAC
GACCACGACATCACCGACGACTGGAACCTTTCCGCGCGCTGGGAGCTGACCGCCTACGGCCATCCGTTCTCC
CGGCGGATCATCGGCAACGCCCTGCTCGCCTACCTGCTCTGCCAGGGCTGGGGCAACGACCCGCAGCATTGC
GGCGAATGGCTGGCGCCGGTCGCGGCCCTGATGGAGGGCGCCGCGGCAGACGGCCGGCTGCCCTGCGCCGAG
CAGGACCGCCTGCTCGATGCCCTGCTCGACTTCCAGCACTGGCACTACCGGTTGCCTGGCAGCCCGACCCTG
ATCGTCCTCGACACGCGCACCCGCCGCTGGCGCAGCGAGCGCAACCTGGGCCGGCCCTCCGGGCTGATGGAC
TGGGAGGCGCTGAGTGAACTCCAGCAGGACCTGCTCGGCGAAAAGGCGGCGATCATCGTGTCGCCGGCGCCG
ATGTTCGGGGTCAAGCTGATCGAGGGCGTGCAGAAGCTCTTCAGCTGGATCGGCCAGCCGCTGCTGGTCGAT
GCGGAAAACTGGATGGCCCATCGCGGCGCGGCCTCGGTGATGATGAATATCTTCCGCCACTCGCGCACGCCG
GGTAACTACCTGATCCTTTCCGGCGACGTGCATTACTCCTTCGTCTACGACATCCGGATTCGCCACCGCGAG
CGCGGGCCCCGGCTCTGGCAGATCACCAGCAGCGGGATCAAGAACGAATTCCCGCGACGCCTGCTGGACTGG
TTCGACCGCCTCAACCGCTGGCTCTATGCGCCCTGGTCGCCACTGAACTGGCTGACCCAGCGGCGCAGCCTG
GAAATCCGCCCGCGCGTTCCGCAGCACAGCCAGGCCGGCGAGCGCCTGTGGAACAGCGCCGGGATCGGCCAG
GTATTCATTGGCGAGGACGGCCGTCCGCGCGCGGTGTTGCAGGTCAATGCCGATGGCTCGCCGGCGACCGCC
TTCGAGCGACATCGCGACGTCGAAGACGAACGAGCGGACCAGTCGCCGGTCGCGCCGGGTCGCTGA