ViewGene
Locus Name:
GeneID:
Location:

GeneID:814
TrivialName: PA14_06950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06950
PAO1 Ortholog Locus:PA0533
Sequence Length:1491
Protein Length:496
Start: 601418
Stop: 602908
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03922.1|AE004490_2 (AE004490) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 494/496 (99%), Positives = 494/496 (99%)
Sequence:
ATGAACGACCAGGTACTGCGTACCCAGACCGACCGCCGCCAGTTGCAGCAGATCATCGCCGGTCTTACCGAA
GGGGTGATCCTGATCGAGCCGGACCAGCGCATCCTCTGGGCCAACGAGGCGGCCCTGGCGATGCACGGCGTC
GATTCGCTGGAAGGCCTGGGCGCCGATACCGGCGAGTATCGCGAGCGCTTTCGCCTGCGCTACCGCAACAAT
CATCCGCTGCAGGAGGGCCAGTACCCGGCCGAGCGCCTGGTGGCTGGCGAGTGCTTCAGCGACGTGGTGGTG
GAAGTGTTTCCCGCCGCCGACGAGGACACCCGCTGGGTGCACCGCGTGCGCGGGTTGGTGCTGACCACCCCC
GAGGACAAGCCAGACTGCCTGGTGCTGATCCTCCACGACGCCACCGAGTGGGCCAGCGCCGAGCAGCGCTTC
GAGAAGACCTTCAATGCCAACCCGGCGCCGGCGGTGATCTGCCGGCTCAGCGACTACCGCTACGTGAAGGTC
AATGTCGGTTTCCTGGAAATGACCGGCTATGCCCGCGACCAGGTGATCGGCCGTTCGGTGTACGAGCTGGAC
GTACTCGACCAGGCCGAGCGCCGCGAACTGGCGGTGGAGCGTCTGGGCGCCGGCGAGACCATCCCGCAGATG
GAGGCGAGCCTGCGGGTGGCGGAGGGCGGACGCAAGTGCGTGGTGGTCGCCGGGCAGCCGATAGAGGTCGGC
GAGGAGGCCTGCATGCTCTTCACCTTCACCGATCTCGAACCGCGGAAGAAGGCCGAGGAGGCCCTGCGCAAG
AGCGAGGAGCGCTTCGCCAAGGCCTTCCGCATGGCACCGGTGCCGAGCCTGGTGCTGTGCGGCGACGACCTG
CAGGTGCTGGACATCAACCAGGCCTTCAGCGAAACCTTCGGCTACCAGGCCGAGGAACTGCTCGGCGAGTCC
ACCGTCGCCTGCGGGCTGTGGCAGGACGGCGGCGCCGAGCGCCTGGGCGAGCTGCTGGCGCAGAGCGGCAGC
GTGCGCAACGTCCAGCTGCGCCTGCAGCACAAGGATCGCAACGGCCTGGACTGCCTGGTCTCGGCCGAGGCG
GTGAGCCTCAACGAGCAGGACTGCGTGCTGGTGGCCTTGCTGGACATCAGCGACCGGCGGCGCACCGAAATG
GAGCTGGTGCACGCCATCGAGACGGTGATGCAGGACGCTTCCTGGTTCAGCCGCACCCTGATCGAAAAGCTC
GCCAACGTGCGCCGCGCCAACGCGCCGGGCACCGGCGCCGAACTGGCCGACCTGACTGCGCGCGAGCGCGAG
GTGTTCGACCTCATCTGCCAGGGCCTGGCGGACAAGGAGATCGCCAAGGAACTGGGCCTGGCGCCGAACACC
GTGCGCAACCACGTGGCGACCATCTACGCCAAGCTCGATGTCCACAGCCGTGGCGAGGCCATCGTCTGGGCA
CGCGAACGCGGATTCGCGCCGGAGCCGCGCAACGGCAACGGGCGCAAATAA
Translation:
MNDQVLRTQTDRRQLQQIIAGLTEGVILIEPDQRILWANEAALAMHGVDSLEGLGADTGEYRERFRLRYRNN
HPLQEGQYPAERLVAGECFSDVVVEVFPAADEDTRWVHRVRGLVLTTPEDKPDCLVLILHDATEWASAEQRF
EKTFNANPAPAVICRLSDYRYVKVNVGFLEMTGYARDQVIGRSVYELDVLDQAERRELAVERLGAGETIPQM
EASLRVAEGGRKCVVVAGQPIEVGEEACMLFTFTDLEPRKKAEEALRKSEERFAKAFRMAPVPSLVLCGDDL
QVLDINQAFSETFGYQAEELLGESTVACGLWQDGGAERLGELLAQSGSVRNVQLRLQHKDRNGLDCLVSAEA
VSLNEQDCVLVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTARERE
VFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGFAPEPRNGNGRK*
AnnotationID:823GeneID:814
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 13:01:34
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LuxR family
Cell Localization:()
Synonyms:PA0533
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421,pfam00196
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL45510.1| (AE009400) transcriptional regulator, LuxR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 492

 Score =  462 bits (1188), Expect = e-129
 Identities = 238/487 (48%), Positives = 328/487 (67%), Gaps = 3/487 (0%)






 
Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues, 100.0% aligned
Score = 73.6 bits (181), Expect = 5e-14
Identities = 28/58 (48%), Positives = 38/58 (65%)

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
CD-Length = 58 residues, 100.0% aligned
Score = 71.4 bits (175), Expect = 2e-13
Identities = 28/58 (48%), Positives = 37/58 (63%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18773




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33837




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:814_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:814
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1465
                           PA0533_tr
                           translation of PA0533
                           496
                           99.59
                           99.59
                           0
                           2528.0
     

     
     
53375
                           gb|AAG03922.1|AE004490_2
                           (AE004490) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           496
                           99.59
                           99.59
                           0
                           2528.0
     

     
     
53376
                           gb|AAL45510.1|
                           (AE009400) transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           501
                           48.30
                           66.46
                           14
                           1195.0
     

     
     
53377
                           gb|AAK88733.1|
                           (AE008214) AGR_L_329p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           501
                           48.30
                           66.46
                           14
                           1195.0
     

     






      

          
GC ORFID: 43816How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0533Glimmer Score: 

          
Start: 6402760Stop: 6404250

          
Length: 1491


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0533 translation of PA0533Homolog Bit Score 978.0

          
Other Homologs:  t_PA0533 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACCAGGTACTGCGTACCCAGACCGACCGCCGCCAGTTGCAGCAGATCATCGCCGGTCTTACCGAA 
GGGGTGATCCTGATCGAGCCGGACCAGCGCATCCTCTGGGCCAACGAGGCGGCCCTGGCGATGCACGGCGTC 
GATTCGCTGGAAGGCCTGGGCGCCGATACCGGCGAGTATCGCGAGCGCTTTCGCCTGCGCTACCGCAACAAT 
CATCCGCTGCAGGAGGGCCAGTACCCGGCCGAGCGCCTGGTGGCTGGCGAGTGCTTCAGCGACGTGGTGGTG 
GAAGTGTTTCCCGCCGCCGACGAGGACACCCGCTGGGTGCACCGCGTGCGCGGGTTGGTGCTGACCACCCCC 
GAGGACAAGCCAGACTGCCTGGTGCTGATCCTCCACGACGCCACCGAGTGGGCCAGCGCCGAGCAGCGCTTC 
GAGAAGACCTTCAATGCCAACCCGGCGCCGGCGGTGATCTGCCGGCTCAGCGACTACCGCTACGTGAAGGTC 
AATGTCGGTTTCCTGGAAATGACCGGCTATGCCCGCGACCAGGTGATCGGCCGTTCGGTGTACGAGCTGGAC 
GTACTCGACCAGGCCGAGCGCCGCGAACTGGCGGTGGAGCGTCTGGGCGCCGGCGAGACCATCCCGCAGATG 
GAGGCGAGCCTGCGGGTGGCGGAGGGCGGACGCAAGTGCGTGGTGGTCGCCGGGCAGCCGATAGAGGTCGGC 
GAGGAGGCCTGCATGCTCTTCACCTTCACCGATCTCGAACCGCGGAAGAAGGCCGAGGAGGCCCTGCGCAAG 
AGCGAGGAGCGCTTCGCCAAGGCCTTCCGCATGGCACCGGTGCCGAGCCTGGTGCTGTGCGGCGACGACCTG 
CAGGTGCTGGACATCAACCAGGCCTTCAGCGAAACCTTCGGCTACCAGGCCGAGGAACTGCTCGGCGAGTCC 
ACCGTCGCCTGCGGGCTGTGGCAGGACGGCGGCGCCGAGCGCCTGGGCGAGCTGCTGGCGCAGAGCGGCAGC 
GTGCGCAACGTCCAGCTGCGCCTGCAGCACAAGGATCGCAACGGCCTGGACTGCCTGGTCTCGGCCGAGGCG 
GTGAGCCTCAACGAGCAGGACTGCGTGCTGGTGGCCTTGCTGGACATCAGCGACCGGCGGCGCACCGAAATG 
GAGCTGGTGCACGCCATCGAGACGGTGATGCAGGACGCTTCCTGGTTCAGCCGCACCCTGATCGAAAAGCTC 
GCCAACGTGCGCCGCGCCAACGCGCCGGGCACCGGCGCCGAACTGGCCGACCTGACTGCGCGCGAGCGCGAG 
GTGTTCGACCTCATCTGCCAGGGCCTGGCGGACAAGGAGATCGCCAAGGAACTGGGCCTGGCGCCGAACACC 
GTGCGCAACCACGTGGCGACCATCTACGCCAAGCTCGATGTCCACAGCCGTGGCGAGGCCATCGTCTGGGCA 
CGCGAACGCGGATTCGCGCCGGAGCCGCGCAACGGCAACGGGCGCAAATAA