ViewGene
Locus Name:
GeneID:
Location:

GeneID:813
TrivialName: PA14_17860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17860
PAO1 Ortholog Locus:PA3590
Sequence Length:1533
Protein Length:510
Start: 1533277
Stop: 1534809
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06978.1|AE004779_10 (AE004779) probable hydroxyacyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 503/510 (98%), Positives = 505/510 (99%)
Sequence:
ATGAGCGAGCCATCGATCGTTCTCATCGGTATCGTCGGTACCGGTGCCATGGGCCAGGGCATCGCCCAGCTC
GCTGCCTGTGCCGGGCTGTCGGTGCTGCTCTACGACAGCCGCCAGGGGGCGGCGCTGCAAGCGCGCGAGCAG
ATCGCCACGGTCCTTGCCCGGCAGGTGGAGCGGGGCCGGCTGGAGGCGGAGGCTGTCGAGCGCGCGATGGGC
AATCTGCGGGTGGTCGAGGACTTGCGGGTCCTACGCGGCTGCCAGTTGGTGATCGAGGCGATCGTCGAGAAC
CTGGAGGCcaaGCAGGCGTTGTTCCGCCAATTGGAAGAGGTGGTCGGCGACGAAGCGATCCTCGCCAGCAAT
ACCTCCTCGCTGTCGGTTACCGCGATCGCCTCGGCCTGTCGCGATCCCGGCCGGGTCGCCGGTCTGCACTTC
TTCAATCCGGTGCCGCTGATGCGTCTGGTGGAGGTGATCGACGGTCTCGCCACCCGCACCGGCATCGCCGAG
CGACTGTGCGCCCTGGTGGCGACCTTCGGCCACCAGGCGGTGCGTGCCACGGACAGCCCCGGCTTCATCGTC
AACCATGCCGGACGGGCCTTCGGCACCGAGGCGCTGCGTATCCTCGGCGAGGGCGTGGCGCCGGTGGCGGCG
ATCGACGAAGTCCTGCGCGAGGGCGCCGGCTTCCGCATGGGCCCGTTCGAGCTGTTCGACCTGGTCGGGTTG
GACGTCAGCCTGCCGGTGATGGAGTCGATCTACCGGCAGTACTACGAGGAGCCGCGTTATCGTCCGCATCCC
TTGCTGCGCCAGATGCTCGCCGCCGGCCGCCTGGGGCGCAAGAGCGGCCAGGGCTTCTACCGCTACGACGGC
GCTGGGCAGGTGCCCGCCGCCGCCCCGGCGGTTGCGCCAGGCGCGGCGTTGCCGCCGGTGTGGCTGGGCGTC
GACGACGAACATGACCGCGCGCCATTGCTGACGTTGCTACAACGTCTGGGCGCCGAGGTGGAGAGTGGCGAG
CGTCCTTCCGGGGCGGCGTTGTGCCTGCTTGCGCCGCTGGGCGCCGACGTCAGCGCCGCAGCGCGGCGGTTC
GCCGTCGATCCGACGCGCAGCCTGGCCATCGACGTGCTGTCGGACCTGGAGCGACACCGCTGCCTGATGGCC
TGCCCGGCGACCCGAGCGGAGCTGCAGCAGGCCGCTCGCACCCTGTTCGCACGGGACGGCGTGGGCGTCACG
CTGATTCGCGACAGCGCCGGGTTCATCGTCCAGCGCACCCTCGCCTCGATCGTCAATCTCGCCTGCGACATC
GCCCAGCAGGGTATCGCTTCGGTGGAGCACATCGACCTGGCGGTGCGCCTCGGTCTCGGCTATCCGCTGGGG
CCGCTGGAGTGGGGCGACCGACTGGGCGCCGGGCGCGTGCTGCGCATCCTCGAACGCCTGCATGCGCTCAGC
GGCGACCCGCGCTATCGCCCCAGTCCCTGGCTGCGCCGGCGCGCCCAACTGGGCCTTTCCCTGCGCCAGCCG
GACAGCCCGTTGGCCTCCTGA
Translation:
MSEPSIVLIGIVGTGAMGQGIAQLAACAGLSVLLYDSRQGAALQAREQIATVLARQVERGRLEAEAVERAMG
NLRVVEDLRVLRGCQLVIEAIVENLEAKQALFRQLEEVVGDEAILASNTSSLSVTAIASACRDPGRVAGLHF
FNPVPLMRLVEVIDGLATRTGIAERLCALVATFGHQAVRATDSPGFIVNHAGRAFGTEALRILGEGVAPVAA
IDEVLREGAGFRMGPFELFDLVGLDVSLPVMESIYRQYYEEPRYRPHPLLRQMLAAGRLGRKSGQGFYRYDG
AGQVPAAAPAVAPGAALPPVWLGVDDEHDRAPLLTLLQRLGAEVESGERPSGAALCLLAPLGADVSAAARRF
AVDPTRSLAIDVLSDLERHRCLMACPATRAELQQAARTLFARDGVGVTLIRDSAGFIVQRTLASIVNLACDI
AQQGIASVEHIDLAVRLGLGYPLGPLEWGDRLGAGRVLRILERLHALSGDPRYRPSPWLRRRAQLGLSLRQP
DSPLAS*
AnnotationID:822GeneID:813
AnnotatorUID: diggins
Modification Date/Time: 2005-07-03 18:06:26
Gene Name:
Confidence Code:3
GeneProduct:putative 3-hydroxyacyl-CoA dehydrogenase
Cell Localization:()
Synonyms:paaH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1250,KOG2304
Secondary Functional Category(ies):
EC Number:1.1.1.35
Status:ACTIVE
Pathway:
Phenylacetic acid aerobic catabolism.
Homology:
>gb|AAN33427.1|AE014524_2 (AE014524) 3-hydroxyacyl-CoA dehydrogenase family protein [Brucella
           suis 1330]
          Length = 509

 Score =  583 bits (1504), Expect = e-166
 Identities = 299/506 (59%), Positives = 360/506 (71%), Gaps = 3/506 (0%)

>emb|CAE34945.1| (BX640451) putative 3-hydroxyacyl-CoA dehydrogenase [Bordetella
           bronchiseptica]
          Length = 504

 Score =  467 bits (1201), Expect = e-131
 Identities = 256/506 (50%), Positives = 323/506 (63%), Gaps = 10/506 (1%)

>gb|AAN68889.1|AE016520_9 (AE016786) 3-hydroxyacyl-CoA dehydrogenase PaaC [Pseudomonas putida
           KT2440]
          Length = 505

 Score =  335 bits (860), Expect = 3e-91
 Identities = 216/503 (42%), Positives = 283/503 (56%), Gaps = 27/503 (5%)
Structural Features:
COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
CD-Length = 307 residues,  93.2% aligned
Score =  331 bits (849), Expect = 3e-91
Identities = 135/286 (47%), Positives = 173/286 (60%)

KOG2304, 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
CD-Length = 298 residues,  96.3% aligned
Score =  257 bits (658), Expect = 4e-69
Identities = 120/287 (41%), Positives = 171/287 (59%), Gaps = 6/287 (2%)
Genomic Context:






   
Comment:


















    ReferenceID:1629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31953




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:813_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:813
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1463
                           PA3590_tr
                           translation of PA3590
                           510
                           98.62
                           99.01
                           0
                           2527.0
     

     
     
53315
                           gb|AAG06978.1|AE004779_10
                           (AE004779) probable hydroxyacyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           510
                           98.62
                           99.01
                           0
                           2527.0
     

     
     
1464
                           PA1628_tr
                           translation of PA1628
                           511
                           65.55
                           74.55
                           3
                           1646.0
     

     
     
53316
                           gb|AAG05017.1|AE004590_8
                           (AE004590) probable 3-hydroxyacyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           511
                           65.55
                           74.55
                           3
                           1646.0
     

     
     
53317
                           gb|AAN33427.1|AE014524_2
                           (AE014524) 3-hydroxyacyl-CoA dehydrogenase family protein [Brucella suis 1330]
                           516
                           58.91
                           70.34
                           13
                           1506.0
     

     






      

          
GC ORFID: 43815How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3590Glimmer Score: 

          
Start: 3420659Stop: 3419127

          
Length: 1533


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3590 translation of PA3590Homolog Bit Score 978.0

          
Other Homologs:  t_PA1628 (ORF: BLASTX 639.0), t_PA3590 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCCATCGATCGTTCTCATCGGTATCGTCGGTACCGGTGCCATGGGCCAGGGCATCGCCCAGCTC 
GCTGCCTGTGCCGGGCTGTCGGTGCTGCTCTACGACAGCCGCCAGGGGGCGGCGCTGCAAGCGCGCGAGCAG 
ATCGCCACGGTCCTTGCCCGGCAGGTGGAGCGGGGCCGGCTGGAGGCGGAGGCTGTCGAGCGCGCGATGGGC 
AATCTGCGGGTGGTCGAGGACTTGCGGGTCCTACGCGGCTGCCAGTTGGTGATCGAGGCGATCGTCGAGAAC 
CTGGAGGCcaaGCAGGCGTTGTTCCGCCAATTGGAAGAGGTGGTCGGCGACGAAGCGATCCTCGCCAGCAAT 
ACCTCCTCGCTGTCGGTTACCGCGATCGCCTCGGCCTGTCGCGATCCCGGCCGGGTCGCCGGTCTGCACTTC 
TTCAATCCGGTGCCGCTGATGCGTCTGGTGGAGGTGATCGACGGTCTCGCCACCCGCACCGGCATCGCCGAG 
CGACTGTGCGCCCTGGTGGCGACCTTCGGCCACCAGGCGGTGCGTGCCACGGACAGCCCCGGCTTCATCGTC 
AACCATGCCGGACGGGCCTTCGGCACCGAGGCGCTGCGTATCCTCGGCGAGGGCGTGGCGCCGGTGGCGGCG 
ATCGACGAAGTCCTGCGCGAGGGCGCCGGCTTCCGCATGGGCCCGTTCGAGCTGTTCGACCTGGTCGGGTTG 
GACGTCAGCCTGCCGGTGATGGAGTCGATCTACCGGCAGTACTACGAGGAGCCGCGTTATCGTCCGCATCCC 
TTGCTGCGCCAGATGCTCGCCGCCGGCCGCCTGGGGCGCAAGAGCGGCCAGGGCTTCTACCGCTACGACGGC 
GCTGGGCAGGTGCCCGCCGCCGCCCCGGCGGTTGCGCCAGGCGCGGCGTTGCCGCCGGTGTGGCTGGGCGTC 
GACGACGAACATGACCGCGCGCCATTGCTGACGTTGCTACAACGTCTGGGCGCCGAGGTGGAGAGTGGCGAG 
CGTCCTTCCGGGGCGGCGTTGTGCCTGCTTGCGCCGCTGGGCGCCGACGTCAGCGCCGCAGCGCGGCGGTTC 
GCCGTCGATCCGACGCGCAGCCTGGCCATCGACGTGCTGTCGGACCTGGAGCGACACCGCTGCCTGATGGCC 
TGCCCGGCGACCCGAGCGGAGCTGCAGCAGGCCGCTCGCACCCTGTTCGCACGGGACGGCGTGGGCGTCACG 
CTGATTCGCGACAGCGCCGGGTTCATCGTCCAGCGCACCCTCGCCTCGATCGTCAATCTCGCCTGCGACATC 
GCCCAGCAGGGTATCGCTTCGGTGGAGCACATCGACCTGGCGGTGCGCCTCGGTCTCGGCTATCCGCTGGGG 
CCGCTGGAGTGGGGCGACCGACTGGGCGCCGGGCGCGTGCTGCGCATCCTCGAACGCCTGCATGCGCTCAGC 
GGCGACCCGCGCTATCGCCCCAGTCCCTGGCTGCGCCGGCGCGCCCAACTGGGCCTTTCCCTGCGCCAGCCG 
GACAGCCCGTTGGCCTCCTGA