ViewGene
Locus Name:
GeneID:
Location:

GeneID:811
TrivialName: PA14_34050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34050
PAO1 Ortholog Locus:PA2366
Sequence Length:1485
Protein Length:494
Start: 3029141
Stop: 3027657
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05754.1|AE004662_9 (AE004662) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 493/494 (99%), Positives = 493/494 (99%)
Sequence:
ATGCCCAAGTCATCCGCCGCCGAACAATCCGGCGAGAGTTCGACCCAGACCCTGTCCCTGCTCGACGAGATC
ATCGCCAAGGGCCGCATGGCCCACGACGACAGCCAGCAGGACTATGCCCGCGACATGCTCGCGGAATTCGCC
ACCCAGGTCCTCGACGAGGGCATGGCCGTCGACAAGGACACCGTGGCGATGATCAACGACCGCATCAGCCAG
ATCGATGCGCTGATCAGCGACCAGCTCAACCAGATCATCCACCACCCCGAGTTGCAGAAGCTGGAAGCCTCC
TGGCGCGGCCTGCACCAACTGGTGAGCAACACCGAGACCAGCGCGCGGCTCAAGCTGCGCCTGCTGAACGTC
GGCAAGAACGAACTGCAGAACGACCTGGAGAAGGCGGTCGAGTTCGACCAGAGCGCACTGTTCAAGAAGATC
TACGAAGAGGAATACGGCACCTTCGGCGGACAGCCCTTCAGCCTGCTGATCGGCGACTTCACCTTCGGTCGC
CATCCGCAGGACATCGGCCTGCTGGAGAAGCTGTCGAACGTCGCCGCGGCTGCCCACGCGCCGTTCATCGCC
GCCGCCAGCCCACGCCTGTTCGACATGAACAGCTTCACCGAACTGGCCGTGCCGCGCGACCTGACCAAGATC
TTCGAGAGCCTGGAGCTGATCAAGTGGCGCGCCTTCCGCGAGAGCGAGGACTCGCGCTACGTGTCGCTGGTG
CTGCCGAACTTCCTCCTGCGCCTGCCCTACGGCCCGGAGACGCGCCCGGTGGAAGGCATGAACTATGTCGAG
GACGTCAACGGCACCGACCACTCCAAGTACCTCTGGGGCAACGCCGCCTGGGTCCTGGCGCAGCGCATCACC
GAGGCCTTCGCCAAGTACGGCTGGTGCGCGGCGATCCGCGGCGCGGAAGGCGGCGGCGCGGTCGAGGGCCTG
CCGGCGCACACGTTCCGCACCAGCTCCGGCGACCTGTCGCTGAAGTGCCCGACCGAGGTGGCGATCACCGAC
CGCCGCGAGAAGGAACTCAACGATCTCGGCTTCATTTCCCTGTGCCACAAGAAGAACAGCGACGTGGCGGTG
TTCTTCGGCGGCCAGACCACCAACAAGGCCAGGCTCTACAACACCAACGAGGCCAACGCCAACGCGCGCCTG
TCGGCGATGCTGCCGTACGTGCTGGCGGCATCGCGCTTCGCCCACTACCTGAAGGTGATCATGCGCGACAAG
GTCGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTGAACAACTGGATCGCCGACTACGTGCTGATC
AACGACAACGCACCGCAGGAAATCAAGGCGCAGTACCCGCTGCGCGAGGCGCGGGTGGATGTCAGCGAGGTG
GCCGGCAAACCGGGGGCCTACCGCGCCACGGTGTTCCTCCGGCCGCACTTCCAGCTCGAGGAACTCAGCGCG
TCGATCCGCCTGGTCGCCAACCTGCCGCCGCCGGTAGCGGCGTGA
Translation:
MPKSSAAEQSGESSTQTLSLLDEIIAKGRMAHDDSQQDYARDMLAEFATQVLDEGMAVDKDTVAMINDRISQ
IDALISDQLNQIIHHPELQKLEASWRGLHQLVSNTETSARLKLRLLNVGKNELQNDLEKAVEFDQSALFKKI
YEEEYGTFGGQPFSLLIGDFTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDMNSFTELAVPRDLTKI
FESLELIKWRAFRESEDSRYVSLVLPNFLLRLPYGPETRPVEGMNYVEDVNGTDHSKYLWGNAAWVLAQRIT
EAFAKYGWCAAIRGAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAV
FFGGQTTNKARLYNTNEANANARLSAMLPYVLAASRFAHYLKVIMRDKVGSFMTRDNVQTYLNNWIADYVLI
NDNAPQEIKAQYPLREARVDVSEVAGKPGAYRATVFLRPHFQLEELSASIRLVANLPPPVAA*
AnnotationID:820GeneID:811
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2366
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB92576.1| (AF037441) putative 54.5 kDa protein [Edwardsiella ictaluri]
          Length = 495

 Score =  600 bits (1546), Expect = e-171
 Identities = 287/491 (58%), Positives = 378/491 (76%), Gaps = 4/491 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18767




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32910




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:811_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:811
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1455
                           PA2366_tr
                           translation of PA2366
                           494
                           99.79
                           99.79
                           0
                           2528.0
     

     
     
53115
                           gb|AAG05754.1|AE004662_9
                           (AE004662) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           494
                           99.79
                           99.79
                           0
                           2528.0
     

     
     
53116
                           gb|AAQ61640.1|
                           (AE016924) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           494
                           59.71
                           76.72
                           2
                           1589.0
     

     
     
53117
                           gb|AAN68707.1|AE016501_8
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           500
                           58.60
                           75.80
                           6
                           1569.0
     

     
     
53118
                           gb|AAB92576.1|
                           (AF037441) putative 54.5 kDa protein [Edwardsiella ictaluri]
                           499
                           57.51
                           75.75
                           9
                           1548.0
     

     






      

          
GC ORFID: 43813How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2366Glimmer Score: 

          
Start: 1924775Stop: 1926259

          
Length: 1485


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2366 translation of PA2366Homolog Bit Score 978.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2302 (ORF: BLASTX 601.0), t_PA0084 (ORF: BLASTX 469.0), t_PA1658 (ORF: BLASTX 400.0), t_PA2366 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAAGTCATCCGCCGCCGAACAATCCGGCGAGAGTTCGACCCAGACCCTGTCCCTGCTCGACGAGATC 
ATCGCCAAGGGCCGCATGGCCCACGACGACAGCCAGCAGGACTATGCCCGCGACATGCTCGCGGAATTCGCC 
ACCCAGGTCCTCGACGAGGGCATGGCCGTCGACAAGGACACCGTGGCGATGATCAACGACCGCATCAGCCAG 
ATCGATGCGCTGATCAGCGACCAGCTCAACCAGATCATCCACCACCCCGAGTTGCAGAAGCTGGAAGCCTCC 
TGGCGCGGCCTGCACCAACTGGTGAGCAACACCGAGACCAGCGCGCGGCTCAAGCTGCGCCTGCTGAACGTC 
GGCAAGAACGAACTGCAGAACGACCTGGAGAAGGCGGTCGAGTTCGACCAGAGCGCACTGTTCAAGAAGATC 
TACGAAGAGGAATACGGCACCTTCGGCGGACAGCCCTTCAGCCTGCTGATCGGCGACTTCACCTTCGGTCGC 
CATCCGCAGGACATCGGCCTGCTGGAGAAGCTGTCGAACGTCGCCGCGGCTGCCCACGCGCCGTTCATCGCC 
GCCGCCAGCCCACGCCTGTTCGACATGAACAGCTTCACCGAACTGGCCGTGCCGCGCGACCTGACCAAGATC 
TTCGAGAGCCTGGAGCTGATCAAGTGGCGCGCCTTCCGCGAGAGCGAGGACTCGCGCTACGTGTCGCTGGTG 
CTGCCGAACTTCCTCCTGCGCCTGCCCTACGGCCCGGAGACGCGCCCGGTGGAAGGCATGAACTATGTCGAG 
GACGTCAACGGCACCGACCACTCCAAGTACCTCTGGGGCAACGCCGCCTGGGTCCTGGCGCAGCGCATCACC 
GAGGCCTTCGCCAAGTACGGCTGGTGCGCGGCGATCCGCGGCGCGGAAGGCGGCGGCGCGGTCGAGGGCCTG 
CCGGCGCACACGTTCCGCACCAGCTCCGGCGACCTGTCGCTGAAGTGCCCGACCGAGGTGGCGATCACCGAC 
CGCCGCGAGAAGGAACTCAACGATCTCGGCTTCATTTCCCTGTGCCACAAGAAGAACAGCGACGTGGCGGTG 
TTCTTCGGCGGCCAGACCACCAACAAGGCCAGGCTCTACAACACCAACGAGGCCAACGCCAACGCGCGCCTG 
TCGGCGATGCTGCCGTACGTGCTGGCGGCATCGCGCTTCGCCCACTACCTGAAGGTGATCATGCGCGACAAG 
GTCGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTGAACAACTGGATCGCCGACTACGTGCTGATC 
AACGACAACGCACCGCAGGAAATCAAGGCGCAGTACCCGCTGCGCGAGGCGCGGGTGGATGTCAGCGAGGTG 
GCCGGCAAACCGGGGGCCTACCGCGCCACGGTGTTCCTCCGGCCGCACTTCCAGCTCGAGGAACTCAGCGCG 
TCGATCCGCCTGGTCGCCAACCTGCCGCCGCCGGTAGCGGCGTGA