ViewGene
Locus Name:
GeneID:
Location:

GeneID:81
TrivialName: PA14_49460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49460
PAO1 Ortholog Locus:PA1156
Sequence Length:2892
Protein Length:963
Start: 4394703
Stop: 4397594
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04545.1|AE004545_8 (AE004545) ribonucleoside reductase, large chain [Pseudomonas aeruginosa PAO1]
Identities = 963/963 (100%), Positives = 963/963 (100%)
Sequence:
ATGCATACCGACACCACACGCGAGAACCCGCAGGCCAGCGCGCCGCAGGCCGCCGATTCGTCGCAGGATCTG
GCCGCCACCGCGCCGGGCCAGCTGCGCGTGATCAAGCGCAACGGCACCGTAGTCCCCTACACCGATGACAAG
ATCACCGTGGCCATCACCAAGGCGTTCCTCGCCGTGGAAGGCGGCACCGCCGCCGCCTCGTCGCGTATCCAT
GACACCGTGCGCCGCCTGACCGAGCAGGTCACCGCCACCTTCAAGCGCCGCATGCCGTCCGGCGGCACCATC
CACATCGAAGAGATCCAGGACCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAGGTCGCCCGCGAC
TACGTGATCTACCGCGAAGCCCGCGCCGCCGAGCGCAAGAACGCCGGCGCCGCCAGCGATGTCGCCCAGCCG
CACCCGAGCATCCGCATCACCCGCGCCGACGGCAGCCTGTCGCCGCTGGACATGGGCCGCCTGAACACCATC
ATCAGCGAAGCCTGCGAAGGCCTGGCCGAGGTGGACGGCGCGCTGATCGAGCGCGAGACCCTGAAGAACCTC
TACGACGGCGTCGCCGAGAAGGACGTCAACACCGCCCTGGTGATGACCGCGCGCACCCTGGTCGAGCGCGAG
CCGAACTACTCCTACGTCACCGCCCGCCTGCTGATGGACACCCTGCGCGCCGAAGCCCTGGGCTTCCTCGGC
GTGGCCGAGAGCGCCACCCATCACGAAATGGCCGAGCTGTACGCCAAGGCCCTGCCGGCCTACATCGAGAAA
GGCGCCGAGTTCGAGCTGGTCGATGCCAAGCTGAAGGAATTCGACCTGGAGAAACTGGGCAAGGCCATCGAT
CACGAGCGCGACCAGCAGTTCACCTACCTCGGCCTGCAGACCCTGTACGACCGCTACTTCATCCACAAGGAC
GGCATCCGCTTCGAACTGCCGCAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCCATCGAGGAGAAGGAC
CGCGAGGCACGCGCCATCGAGTTCTACAACCTGCTGTCGTCCTTCGACTACATGAGTTCCACCCCCACCCTG
TTCAACGCCGGCACCCTGCGTCCGCAGCTCTCCAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGC
ATCTACGGCGCCATCCACGACAACGCCATGCTGTCGAAATTCGCCGGCGGCCTGGGCAACGACTGGACCCCG
GTGCGCGCGCTGGGCTCCTACATCAAGGGTACCAACGGCAAGTCCCAGGGCGTCGTGCCCTTCCTGAAAGTG
GTCAACGACACCGCGGTCGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCGGTCTGCGCCTACCTGGAGACC
TGGCACCTGGACATCGAGGAATTCCTCGAGCTGCGCAAGAACACCGGTGACGACCGTCGTCGTACCCACGAC
ATGAACACCGCCAACTGGATCCCCGACCTGTTCATGAAGCGCGTCTTCGACGACGGCTCCTGGACCCTCTTC
TCGCCGTCCGACGTCCCCGACCTGCACGACCTCTACGGCAAGGCCTTCGAGGAGCGCTACGAGTACTACGAG
GCCCTGGCCAGCTACGGCAAGCTGAAGCTGCACAAGGTCGTCCAGGCCAAGGACCTGTGGCGCAAGATGCTC
TCCATGCTGTTCGAGACCGGCCACCCGTGGCTGACCTTCAAGGACCCGTGCAACCTGCGCAGCCCGCAGCAG
CACGTGGGCGTGGTGCACAGCTCGAACCTCTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCC
GTCTGCAACCTGGGCTCGATCAACCTGGTCAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGGAG
AAGACCGTCAAGACCGCGGTACGCATGCTCGATAACGTCATCGACATCAACTACTACTCGGTCCCGCAGGCG
CAGAACTCCAACTTCAAGCACCGTCCGGTCGGCCTGGGCATCATGGGCTTCCAGGACGCCCTGTACCTGCAG
CACATCCCCTACGGTTCGGACGCGGCCATCGCCTTCGCCGACCAGTCCATGGAAGCCATCAGCTACTACGCG
ATCCAGGCTTCCTGCGACCTGGCCGACGAGCGCGGCGCCTACCAGACCTTCCAGGGCTCGCTGTGGTCGCAA
GGCATCCTGCCGATCGACTCGGAGAAGAAGCTGATCGAAGAGCGCGGCGCCAAGTACATCGAAGTCGACCTG
TCGGAAACCCTCGACTGGGCGCCGCTGCGCGAGCGCGTACAGAAAGGCATCCGCAACTCGAACATCATGGCC
ATCGCGCCGACCGCGACCATCGCCAACATCACCGGCGTCTCGCAGTCGATCGAGCCGACCTACCAGAACCTG
TACGTGAAGTCGAACCTCTCCGGCGAGTTCACCGTGATCAACCCCTACCTGGTGCGCGACCTCAAGGCCCGC
GGCCTGTGGGACCCGGTCATGGTCAACGACCTGAAGTACTACGACGGTTCCGTGCAGCAGATCGAGCGCATC
CCGCAGGACCTCAAGGACCTCTACGCCACCGCGTTCGAAGTCGAGACCCGCTGGATCGTCGAAGCCGCCAGC
CGTCGCCAGAAGTGGATCGACCAGGCCCAGTCGCTGAACCTGTACATCGCCGGCGCCTCGGGCAAGAAGCTC
GACGTGACCTACCGCATGGCCTGGTTCCGCGGCCTGAAGACCACCTACTACCTCCGTGCCCTGGCCGCCACC
AGCACCGAGAAGTCCACCATCAACACCGGCAAGCTCAACGCCGTGTCGGCCGGTGGCAACGACGGCCTGCAA
GCCGCCCCGGCCGCCGAGCCGAAGCCGGCGCCGGTGCCGCAGGCATGCAGCATCGATAACCCCGACTGCGAA
GCCTGCCAGTGA
Translation:
MHTDTTRENPQASAPQAADSSQDLAATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIH
DTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREARAAERKNAGAASDVAQP
HPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERETLKNLYDGVAEKDVNTALVMTARTLVERE
PNYSYVTARLLMDTLRAEALGFLGVAESATHHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAID
HERDQQFTYLGLQTLYDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTL
FNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKV
VNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLF
SPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQ
HVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQA
QNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQ
GILPIDSEKKLIEERGAKYIEVDLSETLDWAPLRERVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNL
YVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAAS
RRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATSTEKSTINTGKLNAVSAGGNDGLQ
AAPAAEPKPAPVPQACSIDNPDCEACQ*
AnnotationID:91GeneID:81
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:30
Gene Name:nrdA
Confidence Code:2
GeneProduct:ribonucleoside reductase, large chain
Cell Localization:()
Synonyms:PA1156
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0209, pfam02867
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Purine metabolism; Pyrimidine metabolism 
Homology:






 
Structural Features:
COG0209, NrdA, Ribonucleotide reductase, alpha subunit. Score: 629, 0.0
pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain. Score: 519, 6e-148






   
Genomic Context:
Adjacent gene (nrdB) encodes small chain 






   
Comment:


















    ReferenceID:165




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:81
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
158
                           PA1156_tr
                           translation of PA1156
                           963
                           99.99
                           99.99
                           0
                           4974.0
     

     
     
13778
                           gb|AAG04545.1|AE004545_8
                           (AE004545) ribonucleoside reductase, large chain [Pseudomonas aeruginosa PAO1]
                           963
                           99.99
                           99.99
                           0
                           4974.0
     

     
     
13779
                           gb|AAN66803.1|AE016309_5
                           (AE016778) ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
                           963
                           89.51
                           94.28
                           4
                           4509.0
     

     
     
13780
                           gb|AAO55191.1|
                           (AE016861) ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           972
                           87.44
                           92.90
                           11
                           4410.0
     

     
     
13781
                           gb|AAO91050.1|
                           (AE016964) ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 493]
                           965
                           66.21
                           77.61
                           26
                           3258.0
     

     






      

          
GC ORFID: 43083How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1156Glimmer Score: 

          
Start: 559205Stop: 556314

          
Length: 2892


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1156 translation of PA1156Homolog Bit Score 1920.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5943 (ORF: BLASTX 1695.0), t_PA1156 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATACCGACACCACACGCGAGAACCCGCAGGCCAGCGCGCCGCAGGCCGCCGATTCGTCGCAGGATCTG 
GCCGCCACCGCGCCGGGCCAGCTGCGCGTGATCAAGCGCAACGGCACCGTAGTCCCCTACACCGATGACAAG 
ATCACCGTGGCCATCACCAAGGCGTTCCTCGCCGTGGAAGGCGGCACCGCCGCCGCCTCGTCGCGTATCCAT 
GACACCGTGCGCCGCCTGACCGAGCAGGTCACCGCCACCTTCAAGCGCCGCATGCCGTCCGGCGGCACCATC 
CACATCGAAGAGATCCAGGACCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAGGTCGCCCGCGAC 
TACGTGATCTACCGCGAAGCCCGCGCCGCCGAGCGCAAGAACGCCGGCGCCGCCAGCGATGTCGCCCAGCCG 
CACCCGAGCATCCGCATCACCCGCGCCGACGGCAGCCTGTCGCCGCTGGACATGGGCCGCCTGAACACCATC 
ATCAGCGAAGCCTGCGAAGGCCTGGCCGAGGTGGACGGCGCGCTGATCGAGCGCGAGACCCTGAAGAACCTC 
TACGACGGCGTCGCCGAGAAGGACGTCAACACCGCCCTGGTGATGACCGCGCGCACCCTGGTCGAGCGCGAG 
CCGAACTACTCCTACGTCACCGCCCGCCTGCTGATGGACACCCTGCGCGCCGAAGCCCTGGGCTTCCTCGGC 
GTGGCCGAGAGCGCCACCCATCACGAAATGGCCGAGCTGTACGCCAAGGCCCTGCCGGCCTACATCGAGAAA 
GGCGCCGAGTTCGAGCTGGTCGATGCCAAGCTGAAGGAATTCGACCTGGAGAAACTGGGCAAGGCCATCGAT 
CACGAGCGCGACCAGCAGTTCACCTACCTCGGCCTGCAGACCCTGTACGACCGCTACTTCATCCACAAGGAC 
GGCATCCGCTTCGAACTGCCGCAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCCATCGAGGAGAAGGAC 
CGCGAGGCACGCGCCATCGAGTTCTACAACCTGCTGTCGTCCTTCGACTACATGAGTTCCACCCCCACCCTG 
TTCAACGCCGGCACCCTGCGTCCGCAGCTCTCCAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGC 
ATCTACGGCGCCATCCACGACAACGCCATGCTGTCGAAATTCGCCGGCGGCCTGGGCAACGACTGGACCCCG 
GTGCGCGCGCTGGGCTCCTACATCAAGGGTACCAACGGCAAGTCCCAGGGCGTCGTGCCCTTCCTGAAAGTG 
GTCAACGACACCGCGGTCGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCGGTCTGCGCCTACCTGGAGACC 
TGGCACCTGGACATCGAGGAATTCCTCGAGCTGCGCAAGAACACCGGTGACGACCGTCGTCGTACCCACGAC 
ATGAACACCGCCAACTGGATCCCCGACCTGTTCATGAAGCGCGTCTTCGACGACGGCTCCTGGACCCTCTTC 
TCGCCGTCCGACGTCCCCGACCTGCACGACCTCTACGGCAAGGCCTTCGAGGAGCGCTACGAGTACTACGAG 
GCCCTGGCCAGCTACGGCAAGCTGAAGCTGCACAAGGTCGTCCAGGCCAAGGACCTGTGGCGCAAGATGCTC 
TCCATGCTGTTCGAGACCGGCCACCCGTGGCTGACCTTCAAGGACCCGTGCAACCTGCGCAGCCCGCAGCAG 
CACGTGGGCGTGGTGCACAGCTCGAACCTCTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCC 
GTCTGCAACCTGGGCTCGATCAACCTGGTCAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGGAG 
AAGACCGTCAAGACCGCGGTACGCATGCTCGATAACGTCATCGACATCAACTACTACTCGGTCCCGCAGGCG 
CAGAACTCCAACTTCAAGCACCGTCCGGTCGGCCTGGGCATCATGGGCTTCCAGGACGCCCTGTACCTGCAG 
CACATCCCCTACGGTTCGGACGCGGCCATCGCCTTCGCCGACCAGTCCATGGAAGCCATCAGCTACTACGCG 
ATCCAGGCTTCCTGCGACCTGGCCGACGAGCGCGGCGCCTACCAGACCTTCCAGGGCTCGCTGTGGTCGCAA 
GGCATCCTGCCGATCGACTCGGAGAAGAAGCTGATCGAAGAGCGCGGCGCCAAGTACATCGAAGTCGACCTG 
TCGGAAACCCTCGACTGGGCGCCGCTGCGCGAGCGCGTACAGAAAGGCATCCGCAACTCGAACATCATGGCC 
ATCGCGCCGACCGCGACCATCGCCAACATCACCGGCGTCTCGCAGTCGATCGAGCCGACCTACCAGAACCTG 
TACGTGAAGTCGAACCTCTCCGGCGAGTTCACCGTGATCAACCCCTACCTGGTGCGCGACCTCAAGGCCCGC 
GGCCTGTGGGACCCGGTCATGGTCAACGACCTGAAGTACTACGACGGTTCCGTGCAGCAGATCGAGCGCATC 
CCGCAGGACCTCAAGGACCTCTACGCCACCGCGTTCGAAGTCGAGACCCGCTGGATCGTCGAAGCCGCCAGC 
CGTCGCCAGAAGTGGATCGACCAGGCCCAGTCGCTGAACCTGTACATCGCCGGCGCCTCGGGCAAGAAGCTC 
GACGTGACCTACCGCATGGCCTGGTTCCGCGGCCTGAAGACCACCTACTACCTCCGTGCCCTGGCCGCCACC 
AGCACCGAGAAGTCCACCATCAACACCGGCAAGCTCAACGCCGTGTCGGCCGGTGGCAACGACGGCCTGCAA 
GCCGCCCCGGCCGCCGAGCCGAAGCCGGCGCCGGTGCCGCAGGCATGCAGCATCGATAACCCCGACTGCGAA 
GCCTGCCAGTGA