ViewGene
Locus Name:
GeneID:
Location:

GeneID:809
TrivialName: PA14_44420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44420
PAO1 Ortholog Locus:PA1551
Sequence Length:1416
Protein Length:471
Start: 3954185
Stop: 3955600
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04940.1|AE004583_5 (AE004583) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 471/471 (100%), Positives = 471/471 (100%)
Sequence:
ATGAGCAAACAGATTCCCGTTCAAGACGTCACCCCGCCTGCCAAGGGCGACACCAATAACAACGATCTCTAC
GCCAAGCGCGAGAAGATCTACACCCGGGCCTTCACCGGTATCTTCCGCCGACTGCGCATGGTGGGCGGTGCG
GCGCTCTTCCTCCTCTACTTCGGAACCGTCTGGCTCAACTGGAGCGGTCGCCAGGCCGTCTGGTGGGACCTG
CCCGAGCGCAAGTTCTACATCTTCGGCGCCACCTTCTGGCCGCAGGACTTCATGCTGCTGTCCTGGCTGCTG
ATCGTCTGCGCCTTCGGCCTGTTCTTCATCACCGTGTTCGCCGGTCGCGTCTGGTGCGGCTATACCTGCCCG
CAGAGCGTATGGACCTGGATCTACATGTGGTGCGAGAAGGTCACCGAAGGCGACCGCAACCAGCGCATCAAG
CTGGACAAGGCCCCGATGAGCGGCAACAAGCTGCTGCGCAAGACCGCCAAGCACAGCCTGTGGCTGCTGATC
GGCCTGGTCACCGGCCTGACCTTCGTCGGCTACTTCTCGCCGATCCGCGAGCTGATTCCCGAGCTGCTCACC
GGCCAGGCCGACGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTGGCCACCTACGGCAACGCCGGCTGG
CTGCGCGAGCAGGTGTGCATCTACATGTGCCCCTACGCGCGCTTCCAGAGCGTGATGTTCGACAAGGACACC
CTGATCGTCTCCTACGATCCGCGTCGTGGCGAGAAGCGCGGCCCGCGCAAGAAGTCCCTCGACTACAAGGCC
CAGGGCCTGGGCGACTGCATCGACTGCACGATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGCGAC
GGCCTGCAGATCGAGTGCATCGGCTGCGCCGCGTGCATCGACGCCTGCGACAGCATCATGGAGAAGATGAAC
TACCCGAAAGGGCTGATCAGCTACACCACCGAGCACAACCTCAACGGCCAGAAGACCCACCTGGCCCGGCCG
CGCCTGATCGGCTACGCCATCGCCCTGGTGCTGATGATCTCCGCCCTGATCACCGCGGTGGTCCTGCGTCCG
CTGGTCGGCTTCGACGTCAGCAAGGACCGCGTGCTCTACCGCGAGAACGAACTCGGCCGCATCGAGAACGTG
TACAGCCTGAAGATCATGAACAAGGATCAGCAGGACCACACCTACATCCTCGGCGCCAAGGGCCTCGAAGGC
CTGACCCTGGAAGGCCGGCGCGAGCTGAAGGTGGCGGCGGGCGACATCCTCAACCTGCCGATGGAACTGTCC
ATCGAGCCGGAGAAGCTGCCTTCGACCACCAACGAGATCGTCTTCACCATCGAGTCGGCCGACGACCCGAGC
ATCCATAAAGAAGCGAAGAGTCGCTTCATTGGCCCACGCACCCGTTGA
Translation:
MSKQIPVQDVTPPAKGDTNNNDLYAKREKIYTRAFTGIFRRLRMVGGAALFLLYFGTVWLNWSGRQAVWWDL
PERKFYIFGATFWPQDFMLLSWLLIVCAFGLFFITVFAGRVWCGYTCPQSVWTWIYMWCEKVTEGDRNQRIK
LDKAPMSGNKLLRKTAKHSLWLLIGLVTGLTFVGYFSPIRELIPELLTGQADGWAYFWVGFFTLATYGNAGW
LREQVCIYMCPYARFQSVMFDKDTLIVSYDPRRGEKRGPRKKSLDYKAQGLGDCIDCTMCVQVCPTGIDIRD
GLQIECIGCAACIDACDSIMEKMNYPKGLISYTTEHNLNGQKTHLARPRLIGYAIALVLMISALITAVVLRP
LVGFDVSKDRVLYRENELGRIENVYSLKIMNKDQQDHTYILGAKGLEGLTLEGRRELKVAAGDILNLPMELS
IEPEKLPSTTNEIVFTIESADDPSIHKEAKSRFIGPRTR*
AnnotationID:818GeneID:809
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA1551, fixG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative polyferredoxin
Functional Category Confidence Code:5
COGs:COG0348
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69839.1|AE016623_1 (AE016790) iron-sulfur cluster-binding protein [Pseudomonas putida
           KT2440]
          Length = 471

 Score =  830 bits (2145), Expect = 0.0
 Identities = 390/471 (82%), Positives = 422/471 (89%)

>gb|AAO55516.1| (AE016862) FixG-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 470

 Score =  739 bits (1908), Expect = 0.0
 Identities = 343/471 (72%), Positives = 399/471 (84%), Gaps = 1/471 (0%)

>gb|AAN57696.1|AE015906_3 (AE015906) iron-sulfur cluster-binding protein [Shewanella
           oneidensis MR-1]
          Length = 475

 Score =  497 bits (1279), Expect = e-140
 Identities = 233/454 (51%), Positives = 307/454 (67%), Gaps = 2/454 (0%)








 
Structural Features:
COG0348, NapH, Polyferredoxin [Energy production and conversion]
CD-Length = 386 residues,  98.2% aligned
Score =  314 bits (805), Expect = 2e-86
Identities = 157/408 (38%), Positives = 205/408 (50%), Gaps = 31/408 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1621




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18763




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37298




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:809_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:809
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1451
                           PA1551_tr
                           translation of PA1551
                           471
                           99.99
                           99.99
                           0
                           2529.0
     

     
     
53021
                           gb|AAG04940.1|AE004583_5
                           (AE004583) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           471
                           99.99
                           99.99
                           0
                           2529.0
     

     
     
53022
                           gb|AAN69839.1|AE016623_1
                           (AE016790) iron-sulfur cluster-binding protein [Pseudomonas putida KT2440]
                           471
                           82.80
                           89.59
                           0
                           2145.0
     

     
     
53023
                           gb|AAO55516.1|
                           (AE016862) FixG-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           471
                           72.82
                           84.71
                           1
                           1910.0
     

     
     
53024
                           gb|AAN69144.1|AE016548_3
                           (AE016787) iron-sulfur cluster-binding protein [Pseudomonas putida KT2440]
                           472
                           62.07
                           75.21
                           6
                           1574.0
     

     






      

          
GC ORFID: 43811How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1551Glimmer Score: 

          
Start: 999724Stop: 998309

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1551 translation of PA1551Homolog Bit Score 978.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7531 (ORF: BLASTX 734.0), t_PA1551 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAACAGATTCCCGTTCAAGACGTCACCCCGCCTGCCAAGGGCGACACCAATAACAACGATCTCTAC 
GCCAAGCGCGAGAAGATCTACACCCGGGCCTTCACCGGTATCTTCCGCCGACTGCGCATGGTGGGCGGTGCG 
GCGCTCTTCCTCCTCTACTTCGGAACCGTCTGGCTCAACTGGAGCGGTCGCCAGGCCGTCTGGTGGGACCTG 
CCCGAGCGCAAGTTCTACATCTTCGGCGCCACCTTCTGGCCGCAGGACTTCATGCTGCTGTCCTGGCTGCTG 
ATCGTCTGCGCCTTCGGCCTGTTCTTCATCACCGTGTTCGCCGGTCGCGTCTGGTGCGGCTATACCTGCCCG 
CAGAGCGTATGGACCTGGATCTACATGTGGTGCGAGAAGGTCACCGAAGGCGACCGCAACCAGCGCATCAAG 
CTGGACAAGGCCCCGATGAGCGGCAACAAGCTGCTGCGCAAGACCGCCAAGCACAGCCTGTGGCTGCTGATC 
GGCCTGGTCACCGGCCTGACCTTCGTCGGCTACTTCTCGCCGATCCGCGAGCTGATTCCCGAGCTGCTCACC 
GGCCAGGCCGACGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTGGCCACCTACGGCAACGCCGGCTGG 
CTGCGCGAGCAGGTGTGCATCTACATGTGCCCCTACGCGCGCTTCCAGAGCGTGATGTTCGACAAGGACACC 
CTGATCGTCTCCTACGATCCGCGTCGTGGCGAGAAGCGCGGCCCGCGCAAGAAGTCCCTCGACTACAAGGCC 
CAGGGCCTGGGCGACTGCATCGACTGCACGATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGCGAC 
GGCCTGCAGATCGAGTGCATCGGCTGCGCCGCGTGCATCGACGCCTGCGACAGCATCATGGAGAAGATGAAC 
TACCCGAAAGGGCTGATCAGCTACACCACCGAGCACAACCTCAACGGCCAGAAGACCCACCTGGCCCGGCCG 
CGCCTGATCGGCTACGCCATCGCCCTGGTGCTGATGATCTCCGCCCTGATCACCGCGGTGGTCCTGCGTCCG 
CTGGTCGGCTTCGACGTCAGCAAGGACCGCGTGCTCTACCGCGAGAACGAACTCGGCCGCATCGAGAACGTG 
TACAGCCTGAAGATCATGAACAAGGATCAGCAGGACCACACCTACATCCTCGGCGCCAAGGGCCTCGAAGGC 
CTGACCCTGGAAGGCCGGCGCGAGCTGAAGGTGGCGGCGGGCGACATCCTCAACCTGCCGATGGAACTGTCC 
ATCGAGCCGGAGAAGCTGCCTTCGACCACCAACGAGATCGTCTTCACCATCGAGTCGGCCGACGACCCGAGC 
ATCCATAAAGAAGCGAAGAGTCGCTTCATTGGCCCACGCACCCGTTGA