ViewGene

Locus Name:
GeneID:
Location:

GeneID:807
TrivialName: PA14_05480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05480
PAO1 Ortholog Locus:PA0421
Sequence Length:1491
Protein Length:496
Start: 483161
Stop: 484651
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03810.1|AE004479_5 (AE004479) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 495/496 (99%), Positives = 495/496 (99%)
Sequence:
ATGTCGTTAAGGTGGCTGCGCGCCGCGGCGTTTCTCATGTTGGGGGTGTTCAGCGCGGTGGCGCTGGGCAAG
GATAAACAGCCTACGGCGATCGTCGTCGGCGCGGGCCTGGCAGGCCTGAGCGCGGCCTACGAATTGCAGAAG
GACGGCTGGCAGGTCACGGTGCTCGAAGCGCGGCCGCAGGTGGGCGGGCGTTCCGGCCTGGCCACCAGCGAA
TGGGTCGGCAACCAGAAGGTCCAGCCCACGCTCAATGCCTACCTGGACACCTTCAAGCTGAAGCCGGTGCCG
GCGCCGGACTTCGTCCGCACCCCCAGCTACCTGATCGACGGCCTGTACTACAGCAGCAGCGATCTCGCGCTC
AAGCAGCCGAACGTCGCCGCCGACCTCAAGCGCTTCGAGTCGACCCTGGACGATCTCTCTGCATCGATCTCC
GACCCGCTCAACCCTGCCTCGAGCAATACCCTGTTCGCCCTCGACCAGATGAACGCCGCGCGCTGGCTGGAC
AAGCTGAACCTGTCGCCGACCGCGCGCCTGCTGGTCAACCAGCGTATCCGTTCGCGCTACGACGAACCGTCG
CGCCTGTCGCTGCTCTACCTCGCCCAGCAGGGCCGCGCCTACCGTGGCGTCGACGACCGCGACCTGCGCGCG
GCGCGCCTGCCCGGCGGCAGCCAGGTGCTGGCGGAAGCCTTCGTCAAGCAGATCAAGACGATCAAGACCAAA
TCCAAGGTGTCGAGCATCGTCCAGGCCAAGGACGGCGTCGCCGTCAAGGCCGGCAGCGAGACCTACAAGGCC
GACTACGTGGTTCTCGCCGTGCCGCTGAAGGCGCTCGGCCAGATCCAGATGACCCCGTCCCTGAGCGGTACC
CAGATGTCCGCGCTGAAGGGCACCAACTATGGCTGGCGCGACCAGATCCTGCTGAAGTTCAAGCGTCCGGTG
TGGGACGACAAGTCGCGCCTCTCCGGCGAGATCTTCAGCGACCAGGGCCTGGGCATGATCTGGGTCGAGCCG
GCGCTGAAAGGCGGCGCCAACGTGCTGATCAACCTGTCCGGCGACAACGCCCGCGTGCTGCAGGCTTTCGGC
GACCGGCAGATGGTCGACCAGGTGCTGATCCGCATGAACAAGTTCTATCCGAAGATGCGCGGTGCCTTCGGC
GGCTACGAAATTCGTCGCTACAGCGCCGACCCGGGCACCGGCGGTTCCTACCTGGCCTACGGTCCGGGCCAG
GTGACGCGCTTCTGGCGGATCTGGGAACAGCCGCTGTCGCGGGTCGCCTTCGCCGGCGAGCACACCGATGCG
CTGTACCCCGGCACCATCGAGGGGGCGCTGCGCAGCGGCAAGCGCGCCGCCAGCCAGGTGCGCGACCTGTAC
GCCGGCAAGACGCCGGTGATCGAGGGCGCGCCGATGGTGGCGAAGGCCGAGAAGGTAGCCGCACCGACGACC
GGCGGCGAGAAGAAGAACCCGTTCGCCTGGTTCACCCGCCTGTTCGATTGA
Translation:
MSLRWLRAAAFLMLGVFSAVALGKDKQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLATSE
WVGNQKVQPTLNAYLDTFKLKPVPAPDFVRTPSYLIDGLYYSSSDLALKQPNVAADLKRFESTLDDLSASIS
DPLNPASSNTLFALDQMNAARWLDKLNLSPTARLLVNQRIRSRYDEPSRLSLLYLAQQGRAYRGVDDRDLRA
ARLPGGSQVLAEAFVKQIKTIKTKSKVSSIVQAKDGVAVKAGSETYKADYVVLAVPLKALGQIQMTPSLSGT
QMSALKGTNYGWRDQILLKFKRPVWDDKSRLSGEIFSDQGLGMIWVEPALKGGANVLINLSGDNARVLQAFG
DRQMVDQVLIRMNKFYPKMRGAFGGYEIRRYSADPGTGGSYLAYGPGQVTRFWRIWEQPLSRVAFAGEHTDA
LYPGTIEGALRSGKRAASQVRDLYAGKTPVIEGAPMVAKAEKVAAPTTGGEKKNPFAWFTRLFD*
AnnotationID:816GeneID:807
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:00
Gene Name:
Confidence Code:3
GeneProduct:putative monoamine oxidase
Cell Localization:()
Synonyms:PA0421
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1231,pfam01593
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70549.1|AE016697_4 (AE016792) flavin-containing monamine oxidase family protein
           [Pseudomonas putida KT2440]
          Length = 619

 Score =  690 bits (1781), Expect = 0.0
 Identities = 334/483 (69%), Positives = 403/483 (83%), Gaps = 1/483 (0%)

>gb|AAO58501.1| (AE016874) amine oxidase, flavin-containing [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 625

 Score =  678 bits (1750), Expect = 0.0
 Identities = 333/512 (65%), Positives = 408/512 (79%), Gaps = 23/512 (4%)

Structural Features:
COG1231, Monoamine oxidase [Amino acid transport and metabolism]
CD-Length = 450 residues,  99.1% aligned
Score =  396 bits (1018), Expect = 4e-111
Identities = 155/449 (34%), Positives = 207/449 (46%), Gaps = 17/449 (3%)

pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase
CD-Length = 445 residues,  99.8% aligned
Score =  154 bits (390), Expect = 2e-38
Identities = 114/446 (25%), Positives = 171/446 (38%), Gaps = 32/446 (7%)
Genomic Context:
Comment:
ReferenceID:1617
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18759
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33745
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:807_cdd.html
URL:
Homologs By Global Alignment
Gene ID:807

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1446 PA0421_tr translation of PA0421 496 99.79 99.79 0 2530.0
52959 gb|AAG03810.1|AE004479_5 (AE004479) hypothetical protein PA0421 [Pseudomonas aeruginosa PAO1] 496 99.79 99.79 0 2530.0
52960 gb|AAN70549.1|AE016697_4 (AE016792) flavin-containing monamine oxidase family protein [Pseudomonas putida KT2440] 626 53.83 65.49 137 1786.0
52961 gb|AAO58501.1| (AE016874) amine oxidase, flavin-containing [Pseudomonas syringae pv. tomato str. DC3000] 627 53.26 65.23 133 1764.0
GC ORFID: 43809How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0421Glimmer Score:
Start: 6284503Stop: 6285993
Length: 1491
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0421 translation of PA0421Homolog Bit Score 979.0
Other Homologs: t_PA0421 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGTTAAGGTGGCTGCGCGCCGCGGCGTTTCTCATGTTGGGGGTGTTCAGCGCGGTGGCGCTGGGCAAG
GATAAACAGCCTACGGCGATCGTCGTCGGCGCGGGCCTGGCAGGCCTGAGCGCGGCCTACGAATTGCAGAAG
GACGGCTGGCAGGTCACGGTGCTCGAAGCGCGGCCGCAGGTGGGCGGGCGTTCCGGCCTGGCCACCAGCGAA
TGGGTCGGCAACCAGAAGGTCCAGCCCACGCTCAATGCCTACCTGGACACCTTCAAGCTGAAGCCGGTGCCG
GCGCCGGACTTCGTCCGCACCCCCAGCTACCTGATCGACGGCCTGTACTACAGCAGCAGCGATCTCGCGCTC
AAGCAGCCGAACGTCGCCGCCGACCTCAAGCGCTTCGAGTCGACCCTGGACGATCTCTCTGCATCGATCTCC
GACCCGCTCAACCCTGCCTCGAGCAATACCCTGTTCGCCCTCGACCAGATGAACGCCGCGCGCTGGCTGGAC
AAGCTGAACCTGTCGCCGACCGCGCGCCTGCTGGTCAACCAGCGTATCCGTTCGCGCTACGACGAACCGTCG
CGCCTGTCGCTGCTCTACCTCGCCCAGCAGGGCCGCGCCTACCGTGGCGTCGACGACCGCGACCTGCGCGCG
GCGCGCCTGCCCGGCGGCAGCCAGGTGCTGGCGGAAGCCTTCGTCAAGCAGATCAAGACGATCAAGACCAAA
TCCAAGGTGTCGAGCATCGTCCAGGCCAAGGACGGCGTCGCCGTCAAGGCCGGCAGCGAGACCTACAAGGCC
GACTACGTGGTTCTCGCCGTGCCGCTGAAGGCGCTCGGCCAGATCCAGATGACCCCGTCCCTGAGCGGTACC
CAGATGTCCGCGCTGAAGGGCACCAACTATGGCTGGCGCGACCAGATCCTGCTGAAGTTCAAGCGTCCGGTG
TGGGACGACAAGTCGCGCCTCTCCGGCGAGATCTTCAGCGACCAGGGCCTGGGCATGATCTGGGTCGAGCCG
GCGCTGAAAGGCGGCGCCAACGTGCTGATCAACCTGTCCGGCGACAACGCCCGCGTGCTGCAGGCTTTCGGC
GACCGGCAGATGGTCGACCAGGTGCTGATCCGCATGAACAAGTTCTATCCGAAGATGCGCGGTGCCTTCGGC
GGCTACGAAATTCGTCGCTACAGCGCCGACCCGGGCACCGGCGGTTCCTACCTGGCCTACGGTCCGGGCCAG
GTGACGCGCTTCTGGCGGATCTGGGAACAGCCGCTGTCGCGGGTCGCCTTCGCCGGCGAGCACACCGATGCG
CTGTACCCCGGCACCATCGAGGGGGCGCTGCGCAGCGGCAAGCGCGCCGCCAGCCAGGTGCGCGACCTGTAC
GCCGGCAAGACGCCGGTGATCGAGGGCGCGCCGATGGTGGCGAAGGCCGAGAAGGTAGCCGCACCGACGACC
GGCGGCGAGAAGAAGAACCCGTTCGCCTGGTTCACCCGCCTGTTCGATTGA