ViewGene
Locus Name:
GeneID:
Location:

GeneID:806
TrivialName: PA14_02680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02680
PAO1 Ortholog Locus:PA0219
Sequence Length:1491
Protein Length:496
Start: 237370
Stop: 238860
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03608.1|AE004460_1 (AE004460) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 495/496 (99%), Positives = 495/496 (99%)
Sequence:
GTGTTCGAACTCAGCGATTGGCAACGGCGCGCCGCGACACAGCGCTTCATCGACCAGGCCCTGATCGGCGGC
CGCCAGCGTCCGGCCGCCAGCGGCGCTACCTTCGACGCCATCGATCCGGCGAGCAATCGCCTGCTGGCGCGG
GTCGCGGCCTGCGATGCGGCCGACGTCGACGCGGCAGTGGCCGCCGCCCGCCGCGCCTTCGACGAAGGCCCC
TGGGCGCGTCTCGCCCCGGTCGAGCGCAAGCGCGTGCTGCTGCGCCTGGCCGAGCTGATGCTGGCCCATCGC
GAAGAGCTGGCGCTGCTCGACTCGCTGAACATGGGCAAGCCGGTGATGGACGCCTGGAACATCGATGTGCCC
GGCGCCGCCCACGTCTTCGCCTGGTATGCGGAAAGCCTCGACAAGCTCTACGACCAGGTCGCGCCGACCGCC
CAGCAGGCCCTGGCCACCATTACCCGCGTGCCGCTGGGGGTGATCGGCGCGGTGGTGCCGTGGAACTTCCCG
CTCGACATGGCCGCCTGGAAGCTCGCCCCGGCCCTGGCCGCCGGCAACTCGGTGGTGCTCAAGCCGGCCGAG
CAGTCGCCGTTCTCCGCCCTGCGCCTGGCCGAGCTGGCCCTGGAGGCGGGGGTGCCGGAAGGCGTGCTGAAC
GTGGTGCCGGGCCTCGGCGAGCAGGCCGGCAAGGCCCTCGGCCTGCACCCGGAGGTGGACGCACTGGTGTTC
ACCGGCTCCACCGAGGTCGGCAAGTACTTCATGCAGTATTCCGCGCAATCCAACCTCAAGCAGGTCTGGCTG
GAGTGCGGCGGCAAGAGTCCGAACCTGGTGTTCGCCGATTGCCGCGATCTTGACCTGGCGGCGGAAAAGGCC
GCCTTCGGCATTTTCTTCAACCAGGGCGAGGTCTGTTCGGCGAACTCGCGCTTGCTGGTGGAGCGTTCGATC
CACGACGAGTTCGTCGAGCGCCTGCTGGCCAAGGCCCGCGACTGGCAGCCGGGCGATCCGCTGGACCCGGCC
AGCCGCGCCGGCGCCATCGTCGACCGCCGGCAGACCGCCGGGATTCTCGCCGCCATCGAGCGGGCGCAAGGC
GAGGGCGCGACCCTGCTCGGCGGTGGCCGCCAGTTGACGATCAACGGTTCGGACAACTTCATCGAACCGACC
CTGTTCGGCGACGTACGCCCGGACATGCAGCTGGCCCGCGAGGAAATCTTCGGTCCGGTGCTGGCGATCAGC
GCCTTCGACTCCGAGGACGAGGCCATCCGCCTGGCCAACGACAGCCGCTACGGCCTCGCCGCCTCGCTGTGG
AGCGACGACCTGCACCGTGCGCACCGGGTGGCGCGGCGCTTGAATGCCGGAACGGTGTCGGTGAATACCGTG
GACGCGCTGGACGTCGCGGTGCCTTTCGGCGGCGGTAAGCAGTCCGGCTTCGGTCGCGACCTGTCGCTGCAT
TCCTTCGACAAGTACACCCAGTTGAAGACGACCTGGTTCCAGTTGCGCTGA
Translation:
MFELSDWQRRAATQRFIDQALIGGRQRPAASGATFDAIDPASNRLLARVAACDAADVDAAVAAARRAFDEGP
WARLAPVERKRVLLRLAELMLAHREELALLDSLNMGKPVMDAWNIDVPGAAHVFAWYAESLDKLYDQVAPTA
QQALATITRVPLGVIGAVVPWNFPLDMAAWKLAPALAAGNSVVLKPAEQSPFSALRLAELALEAGVPEGVLN
VVPGLGEQAGKALGLHPEVDALVFTGSTEVGKYFMQYSAQSNLKQVWLECGGKSPNLVFADCRDLDLAAEKA
AFGIFFNQGEVCSANSRLLVERSIHDEFVERLLAKARDWQPGDPLDPASRAGAIVDRRQTAGILAAIERAQG
EGATLLGGGRQLTINGSDNFIEPTLFGDVRPDMQLAREEIFGPVLAISAFDSEDEAIRLANDSRYGLAASLW
SDDLHRAHRVARRLNAGTVSVNTVDALDVAVPFGGGKQSGFGRDLSLHSFDKYTQLKTTWFQLR*
AnnotationID:815GeneID:806
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:55
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:aldH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative NAD-dependent aldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):
EC Number:1.2.1.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68197.1|AE016452_10 (AE016783) aldehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 497

 Score =  783 bits (2022), Expect = 0.0
 Identities = 393/496 (79%), Positives = 437/496 (88%)

>emb|CAE42576.1| (BX640417) putative aldehyde dehydrogenase [Bordetella pertussis]
          Length = 497

 Score =  589 bits (1519), Expect = e-167
 Identities = 301/492 (61%), Positives = 361/492 (73%), Gaps = 1/492 (0%)








 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. 
CD-Length = 464 residues,  99.4% aligned
Score =  534 bits (1376), Expect = 1e-152
Identities = 235/468 (50%), Positives = 314/468 (67%), Gaps = 8/468 (1%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.4% aligned
Score =  484 bits (1247), Expect = 1e-137
Identities = 243/480 (50%), Positives = 318/480 (66%), Gaps = 13/480 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14225




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18757




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33580




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:806_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:806
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1438
                           PA0219_tr
                           translation of PA0219
                           496
                           99.79
                           99.79
                           0
                           2530.0
     

     
     
52759
                           gb|AAG03608.1|AE004460_1
                           (AE004460) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           496
                           99.59
                           99.79
                           0
                           2527.0
     

     
     
52760
                           gb|AAN68197.1|AE016452_10
                           (AE016783) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           497
                           78.87
                           87.92
                           1
                           2018.0
     

     
     
52764
                           emb|CAE33140.1|
                           (BX640445) probable aldehyde dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           498
                           60.64
                           71.68
                           2
                           1502.0
     

     
     
52761
                           emb|CAE42576.1|
                           (BX640417) putative aldehyde dehydrogenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           499
                           60.32
                           72.54
                           5
                           1517.0
     

     






      

          
GC ORFID: 43808How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0219Glimmer Score: 

          
Start: 6038711Stop: 6040201

          
Length: 1491


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0219 translation of PA0219Homolog Bit Score 979.0

          
Other Homologs:  t_PA5312 (ORF: BLASTX 554.0), psyr_15may02_Scaffold2_revised_gene3152 (ORF: BLASTX 553.0), t_PA4189 (ORF: BLASTX 468.0), t_PA4073 (ORF: BLASTX 404.0), t_PA5373 (ORF: BLASTX 363.0), psyr_15may02_Scaffold1_revised_gene155 (ORF: BLASTX 349.0), t_PA4123 (ORF: BLASTX 340.0), t_PA4022 (ORF: BLASTX 329.0), t_PA1984 (ORF: BLASTX 328.0), psyr_15may02_Scaffold2_revised_gene3624 (ORF: BLASTX 318.0), psyr_15may02_Scaffold8_revised_gene7514 (ORF: BLASTX 286.0), t_PA0219 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCGAACTCAGCGATTGGCAACGGCGCGCCGCGACACAGCGCTTCATCGACCAGGCCCTGATCGGCGGC 
CGCCAGCGTCCGGCCGCCAGCGGCGCTACCTTCGACGCCATCGATCCGGCGAGCAATCGCCTGCTGGCGCGG 
GTCGCGGCCTGCGATGCGGCCGACGTCGACGCGGCAGTGGCCGCCGCCCGCCGCGCCTTCGACGAAGGCCCC 
TGGGCGCGTCTCGCCCCGGTCGAGCGCAAGCGCGTGCTGCTGCGCCTGGCCGAGCTGATGCTGGCCCATCGC 
GAAGAGCTGGCGCTGCTCGACTCGCTGAACATGGGCAAGCCGGTGATGGACGCCTGGAACATCGATGTGCCC 
GGCGCCGCCCACGTCTTCGCCTGGTATGCGGAAAGCCTCGACAAGCTCTACGACCAGGTCGCGCCGACCGCC 
CAGCAGGCCCTGGCCACCATTACCCGCGTGCCGCTGGGGGTGATCGGCGCGGTGGTGCCGTGGAACTTCCCG 
CTCGACATGGCCGCCTGGAAGCTCGCCCCGGCCCTGGCCGCCGGCAACTCGGTGGTGCTCAAGCCGGCCGAG 
CAGTCGCCGTTCTCCGCCCTGCGCCTGGCCGAGCTGGCCCTGGAGGCGGGGGTGCCGGAAGGCGTGCTGAAC 
GTGGTGCCGGGCCTCGGCGAGCAGGCCGGCAAGGCCCTCGGCCTGCACCCGGAGGTGGACGCACTGGTGTTC 
ACCGGCTCCACCGAGGTCGGCAAGTACTTCATGCAGTATTCCGCGCAATCCAACCTCAAGCAGGTCTGGCTG 
GAGTGCGGCGGCAAGAGTCCGAACCTGGTGTTCGCCGATTGCCGCGATCTTGACCTGGCGGCGGAAAAGGCC 
GCCTTCGGCATTTTCTTCAACCAGGGCGAGGTCTGTTCGGCGAACTCGCGCTTGCTGGTGGAGCGTTCGATC 
CACGACGAGTTCGTCGAGCGCCTGCTGGCCAAGGCCCGCGACTGGCAGCCGGGCGATCCGCTGGACCCGGCC 
AGCCGCGCCGGCGCCATCGTCGACCGCCGGCAGACCGCCGGGATTCTCGCCGCCATCGAGCGGGCGCAAGGC 
GAGGGCGCGACCCTGCTCGGCGGTGGCCGCCAGTTGACGATCAACGGTTCGGACAACTTCATCGAACCGACC 
CTGTTCGGCGACGTACGCCCGGACATGCAGCTGGCCCGCGAGGAAATCTTCGGTCCGGTGCTGGCGATCAGC 
GCCTTCGACTCCGAGGACGAGGCCATCCGCCTGGCCAACGACAGCCGCTACGGCCTCGCCGCCTCGCTGTGG 
AGCGACGACCTGCACCGTGCGCACCGGGTGGCGCGGCGCTTGAATGCCGGAACGGTGTCGGTGAATACCGTG 
GACGCGCTGGACGTCGCGGTGCCTTTCGGCGGCGGTAAGCAGTCCGGCTTCGGTCGCGACCTGTCGCTGCAT 
TCCTTCGACAAGTACACCCAGTTGAAGACGACCTGGTTCCAGTTGCGCTGA