ViewGene
Locus Name:
GeneID:
Location:

GeneID:803
TrivialName: PA14_34870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34870
PAO1 Ortholog Locus:PA2300
Sequence Length:1452
Protein Length:483
Start: 3103993
Stop: 3105444
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05688.1|AE004655_10 (AE004655) chitinase [Pseudomonas aeruginosa PAO1]
Identities = 481/483 (99%), Positives = 481/483 (99%)
Sequence:
ATGATCAGGATCGACTTTTCCCAGTTGCACCAGGCCCGCGAAGATGCCGCGGCGGCCATGCCGAGCATCGCC
GGCAAGAAGATTCTCATGGGCTTCTGGCACAACTGGCCGGCCGGCGCCGCCGACGGCTACCAGCAGGGCTCG
TTCGCCAACATTGCGCTGGAAGACGTGCCGAGCGAGTACAACGTGGTCGCCGTGGCCTTCATGAAAGGGCGC
GGCATCCCGACCTTCCAGCCATACAACCTGTCCGACGCGGAGTTTCGCCGGCAGGTCGGCGTGCTCAACGCC
CAGGGCCGCGCGGTGCTGATCTCGCTGGGGGGCGCCGACGCGCACATCGAGCTGCACGCCGGGCAGGAGCAG
GCGCTGGCCGCCGAGATCGTCCGCCTGGTGGAAACCTACGGTTTCGACGGCCTGGACATCGACCTCGAGCAG
AGCGCCATCGACCTGGCCGACAACCAGCGGGTGCTGCCGGCGGCCCTCAAGCTGGTGCGCGAGCACTACGCC
GGGCAGGGCAAGCACTTCATCGTCAGCATGGCCCCGGAGTTCCCCTATCTGCACAAGAACGGCAAGTACGTG
CCTTATCTGCAGGCCCTGGAAGGCGTCTACGACTTCATCGCGCCGCAGTACTACAACCAGGGCGGCGACGGC
CTGTGGGTCCAGGAGGCGAACGGCGGCAAGGGCGCCTGGATCGCGCAGAACAACGACGCGATGAAAGAAGAC
TTCCTCTACTACCTCACCGAGAGCCTGGCCACCGGCAGCCGCGACTTCGTGCGGATCCCGGCGCAGCGCCTG
GCCATCGGCCTGCCGAGCAACGTCGATGCGGCGGCCACCGGCTACGTGATCGATCCCGCCGCGGTGAGCAAT
GCGTTTCGCCGCCTGGAGGCCGCCGGTCATGCGATCAAGGGCCTGATGACCTGGTCGGTGAACTGGGACGAT
GGCCTGAACAAGCGCGGCGAGCGCTACAACTGGGAGTTCCGCAAGCGCTACGCCAGCCTGATCCATGACGAC
GAGGGCGGCGACCAGCGCCCGGCGCCGCCGCAGGGCCTGCGTCTGCTGGAGCGCGGCGAGACCAGCCTGGTG
CTGGCCTGGAACGCCTCCAGCGGGCAGCGTCCGATCGATTACTACAGCCTCTATCGCGACGGCGCCATGGTT
GGCCAGAGCGCCGCGCTGGGTTCCACCGACAGCGGCCTGACGGCGGACACCCGCTACAGCTATTTCGTCACC
GCCACCGATACCCAGGGCAACCAGTCGCTGCCCAGCGAAGGCCTGGAGGTCAGCACCAGCGGCGGGGCGGTG
GATCCGCAATTCCCGCAGTGGCGGGAGAACCAGGCCTACCGGGTCGACGATGGGGTGACCTATGAGGGGCTG
CGCTATCTCTGCCTGCAGGCGCACACCTCCAACAGCGGCTGGACGCCGCCGGTAGCCTTCACCCTCTGGCGG
CCGCTGCGCTGA
Translation:
MIRIDFSQLHQAREDAAAAMPSIAGKKILMGFWHNWPAGAADGYQQGSFANIALEDVPSEYNVVAVAFMKGR
GIPTFQPYNLSDAEFRRQVGVLNAQGRAVLISLGGADAHIELHAGQEQALAAEIVRLVETYGFDGLDIDLEQ
SAIDLADNQRVLPAALKLVREHYAGQGKHFIVSMAPEFPYLHKNGKYVPYLQALEGVYDFIAPQYYNQGGDG
LWVQEANGGKGAWIAQNNDAMKEDFLYYLTESLATGSRDFVRIPAQRLAIGLPSNVDAAATGYVIDPAAVSN
AFRRLEAAGHAIKGLMTWSVNWDDGLNKRGERYNWEFRKRYASLIHDDEGGDQRPAPPQGLRLLERGETSLV
LAWNASSGQRPIDYYSLYRDGAMVGQSAALGSTDSGLTADTRYSYFVTATDTQGNQSLPSEGLEVSTSGGAV
DPQFPQWRENQAYRVDDGVTYEGLRYLCLQAHTSNSGWTPPVAFTLWRPLR*
AnnotationID:812GeneID:803
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:38
Gene Name:chiC
Confidence Code:1
GeneProduct:chitinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3469
Secondary Functional Category(ies):transport of small molecules
EC Number:3.2.1.14
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA76623.1| (AB019238) chitinase C1 [Serratia marcescens]
          Length = 480

 Score =  638 bits (1645), Expect = 0.0
 Identities = 316/472 (66%), Positives = 368/472 (77%), Gaps = 13/472 (2%)

>gb|AAO53944.1| (AE016857) chitinase [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 598

 Score =  487 bits (1253), Expect = e-137
 Identities = 247/440 (56%), Positives = 296/440 (67%), Gaps = 33/440 (7%)








 
Structural Features:
COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism]
CD-Length = 332 residues,  99.7% aligned
Score =  529 bits (1363), Expect = 3e-151
Identities = 222/336 (66%), Positives = 254/336 (75%), Gaps = 6/336 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18751




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32490




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:803_cdd.html


    		




 
URL:

















    ReferenceID:34462




  
Author/Investigator(s):
        Folders J, Algra J, Roelofs MS, van Loon LC, Tommassen J, Bitter W.





  
Title:
        Characterization of Pseudomonas aeruginosa chitinase, a gradually secreted protein.




  
PubMed:
        11717261


MedLine:
        




    
Source:
J Bacteriol. 2001 Dec;183(24):7044-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11717261









           
Homologs By Global Alignment 

           

       



     
Gene ID:803
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1434
                           PA2300_tr
                           translation of PA2300
                           483
                           99.58
                           99.58
                           0
                           2530.0
     

     
     
52622
                           gb|AAG05688.1|AE004655_10
                           (AE004655) chitinase [Pseudomonas aeruginosa PAO1]
                           483
                           99.58
                           99.58
                           0
                           2530.0
     

     
     
52623
                           gb|AAK69491.1|AF279793_1
                           (AF279793) chitinase ChiC [Pseudomonas aeruginosa]
                           483
                           99.58
                           99.58
                           0
                           2530.0
     

     
     
52624
                           dbj|BAA76623.1|
                           (AB019238) chitinase C1 [Serratia marcescens]
                           492
                           64.43
                           75.60
                           21
                           1647.0
     

     
     
52625
                           gb|AAL57856.1|AF454464_1
                           (AF454464) chitinase [Serratia marcescens]
                           492
                           63.61
                           74.79
                           21
                           1622.0
     

     






      

          
GC ORFID: 43805How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2300Glimmer Score: 

          
Start: 1849923Stop: 1848472

          
Length: 1452


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2300 translation of PA2300Homolog Bit Score 979.0

          
Other Homologs:  t_PA2300 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGGATCGACTTTTCCCAGTTGCACCAGGCCCGCGAAGATGCCGCGGCGGCCATGCCGAGCATCGCC 
GGCAAGAAGATTCTCATGGGCTTCTGGCACAACTGGCCGGCCGGCGCCGCCGACGGCTACCAGCAGGGCTCG 
TTCGCCAACATTGCGCTGGAAGACGTGCCGAGCGAGTACAACGTGGTCGCCGTGGCCTTCATGAAAGGGCGC 
GGCATCCCGACCTTCCAGCCATACAACCTGTCCGACGCGGAGTTTCGCCGGCAGGTCGGCGTGCTCAACGCC 
CAGGGCCGCGCGGTGCTGATCTCGCTGGGGGGCGCCGACGCGCACATCGAGCTGCACGCCGGGCAGGAGCAG 
GCGCTGGCCGCCGAGATCGTCCGCCTGGTGGAAACCTACGGTTTCGACGGCCTGGACATCGACCTCGAGCAG 
AGCGCCATCGACCTGGCCGACAACCAGCGGGTGCTGCCGGCGGCCCTCAAGCTGGTGCGCGAGCACTACGCC 
GGGCAGGGCAAGCACTTCATCGTCAGCATGGCCCCGGAGTTCCCCTATCTGCACAAGAACGGCAAGTACGTG 
CCTTATCTGCAGGCCCTGGAAGGCGTCTACGACTTCATCGCGCCGCAGTACTACAACCAGGGCGGCGACGGC 
CTGTGGGTCCAGGAGGCGAACGGCGGCAAGGGCGCCTGGATCGCGCAGAACAACGACGCGATGAAAGAAGAC 
TTCCTCTACTACCTCACCGAGAGCCTGGCCACCGGCAGCCGCGACTTCGTGCGGATCCCGGCGCAGCGCCTG 
GCCATCGGCCTGCCGAGCAACGTCGATGCGGCGGCCACCGGCTACGTGATCGATCCCGCCGCGGTGAGCAAT 
GCGTTTCGCCGCCTGGAGGCCGCCGGTCATGCGATCAAGGGCCTGATGACCTGGTCGGTGAACTGGGACGAT 
GGCCTGAACAAGCGCGGCGAGCGCTACAACTGGGAGTTCCGCAAGCGCTACGCCAGCCTGATCCATGACGAC 
GAGGGCGGCGACCAGCGCCCGGCGCCGCCGCAGGGCCTGCGTCTGCTGGAGCGCGGCGAGACCAGCCTGGTG 
CTGGCCTGGAACGCCTCCAGCGGGCAGCGTCCGATCGATTACTACAGCCTCTATCGCGACGGCGCCATGGTT 
GGCCAGAGCGCCGCGCTGGGTTCCACCGACAGCGGCCTGACGGCGGACACCCGCTACAGCTATTTCGTCACC 
GCCACCGATACCCAGGGCAACCAGTCGCTGCCCAGCGAAGGCCTGGAGGTCAGCACCAGCGGCGGGGCGGTG 
GATCCGCAATTCCCGCAGTGGCGGGAGAACCAGGCCTACCGGGTCGACGATGGGGTGACCTATGAGGGGCTG 
CGCTATCTCTGCCTGCAGGCGCACACCTCCAACAGCGGCTGGACGCCGCCGGTAGCCTTCACCCTCTGGCGG 
CCGCTGCGCTGA