ViewGene

Locus Name:
GeneID:
Location:

GeneID:802
TrivialName: PA14_44340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44340
PAO1 Ortholog Locus:PA1557
Sequence Length:1428
Protein Length:475
Start: 3947245
Stop: 3948672
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04946.1|AE004584_2 (AE004584) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1]
Identities = 475/475 (100%), Positives = 475/475 (100%)
Sequence:
ATGAGCACCACTAACCCAGAGTCCGCCTATAACTACAAGGTGGTCCGCCAATTCGCCATCATGACCGTGGTC
TGGGGCATCGTCGGCATGACCGTCGGTGTCCTGATCGCCGCCCAGCTGGTATGGCCCGACCTGAACTTCGGC
TTGCCGTGGACGAGCTTCGGCCGCCTGCGCCCGCTGCACACCAACGCGGTGATCTTCGCCTTCGGCGGTTGC
GCACTGTTCGCCACCAGCTACTACGCGGTGCAGCGCACCTGCCAGGTGCGACTGTTCTCCGACACCCTCGCC
TCCTTCACCTTCTGGGGCTGGCAACTGGTGATCCTGCTGGCCGCCATCAGCCTGCCGCTGGGCTACACCTCG
TCCAAGGAGTACGCCGAGCTGGAGTGGCCGATCGATATCCTGATCACGGTGGTCTGGGTCGCCTACGCGGTG
GTGTTCTTCGGCACCCTGGTCAAGCGCAAGGTCAAGCACATCTATGTGGGCAACTGGTTCTTCGGCGGGTTC
ATCCTCACCGTCGCCATGCTCCACGTGGTGAACAACCTCGAGCTGCCGGTGACCTTCACCAAGTCCTACTCG
CTGTACGCCGGCGCCACCGACGCCATGGTCCAGTGGTGGTACGGGCACAACGCCGTGGGCTTCTTCCTCACC
GCCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGAGCGTCCGGTCTATTCCTACCGCCTG
TCCATCGTCCACTTCTGGGCGCTGATCGCGGTGTACATCTGGGCCGGCCCGCACCACCTGCACTACACCGCG
CTGCCGGACTGGGCACAGTCGCTGGGCATGGTGATGTCGCTGATCCTCCTGGCGCCGAGCTGGGGCGGCATG
ATCAACGGCATGATGACCCTCTCGGGCGCCTGGCATAAGCTGCGCAGCGACCCGATCCTGCGCTTCCTGGTG
GTGTCCCTGGCCTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCAACGCCCTC
TCCCACTACACCGACTGGACCATCGGCCACGTACACGCCGGCGCCCTCGGCTGGGTCGCGATGGTTTCCATC
GGCTCGCTCTACCACCTGATCCCGAAGGTCTTCGGCCGCGAGAAGATGTACAGCCTGGGCCTGATCAACGCG
CACTTCTGGCTGGCCACCATCGGTACCGTGCTTTACATCGCCTCGATGTGGGTCAACGGCATCACCCAGGGC
CTGATGTGGCGCGCGGTCAACGAGGACGGCACCCTGACCTACTCCTTCGTCGAAGCGCTGGCCGCCGGCCAC
CCCGGCTTCATCGTGCGCATGCTCGGCGGTTTCATCTTCCTGCTCGGCATGTTCCTGATGGCCTACAACACC
TGGCGCACCGTCAGTGCCGCCAAGCCGGCCGAATACGAAGCCGCCGCACAGATCGCCTGA
Translation:
MSTTNPESAYNYKVVRQFAIMTVVWGIVGMTVGVLIAAQLVWPDLNFGLPWTSFGRLRPLHTNAVIFAFGGC
ALFATSYYAVQRTCQVRLFSDTLASFTFWGWQLVILLAAISLPLGYTSSKEYAELEWPIDILITVVWVAYAV
VFFGTLVKRKVKHIYVGNWFFGGFILTVAMLHVVNNLELPVTFTKSYSLYAGATDAMVQWWYGHNAVGFFLT
AGFLGMMYYFVPKQAERPVYSYRLSIVHFWALIAVYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGM
INGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMVSI
GSLYHLIPKVFGREKMYSLGLINAHFWLATIGTVLYIASMWVNGITQGLMWRAVNEDGTLTYSFVEALAAGH
PGFIVRMLGGFIFLLGMFLMAYNTWRTVSAAKPAEYEAAAQIA*
AnnotationID:811GeneID:802
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:59
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome oxidase subunit (cbb3-type)
Cell Localization:()
Synonyms:PA1557, ccoN, fixN, cytN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3278,pfam00115
Secondary Functional Category(ies):
EC Number:1.9.3.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69830.1|AE016622_7 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           putida KT2440]
          Length = 474

 Score =  870 bits (2248), Expect = 0.0
 Identities = 415/475 (87%), Positives = 440/475 (92%), Gaps = 1/475 (0%)

>gb|AAO55522.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 480

 Score =  813 bits (2100), Expect = 0.0
 Identities = 373/475 (78%), Positives = 424/475 (89%)

>dbj|BAC59807.1| (AP005078) cytochrome c oxidase, subunit CcoN [Vibrio
           parahaemolyticus]
          Length = 477

 Score =  797 bits (2058), Expect = 0.0
 Identities = 365/458 (79%), Positives = 411/458 (89%)

Structural Features:
COG3278, CcoN, Cbb3-type cytochrome oxidase, subunit 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 482 residues,  99.8% aligned
Score =  727 bits (1877), Expect = 0.0
Identities = 370/481 (76%), Positives = 416/481 (86%), Gaps = 6/481 (1%)

pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
CD-Length = 458 residues,  88.9% aligned
Score =  242 bits (618), Expect = 8e-65
Identities = 90/433 (20%), Positives = 152/433 (35%), Gaps = 35/433 (8%)

Genomic Context:
Comment:
ReferenceID:1607
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18749
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37294
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:802_cdd.html
URL:
ReferenceID:37922
Author/Investigator(s): Thony-Meyer L, Beck C, Preisig O, Hennecke H.
Title: The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus.
PubMed: 7891558
MedLine:
Source:
Mol Microbiol. 1994 Nov;14(4):705-16.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7891558
ReferenceID:37923
Author/Investigator(s): Preisig O, Anthamatten D, Hennecke H.
Title: Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis.
PubMed: 8386371
MedLine:
Source:
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3309-13.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8386371
Homologs By Global Alignment
Gene ID:802

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1430 PA1557_tr translation of PA1557 475 99.99 99.99 0 2530.0
52563 gb|AAG04946.1|AE004584_2 (AE004584) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1] 475 99.99 99.99 0 2530.0
52565 gb|AAN69830.1|AE016622_7 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas putida KT2440] 475 87.36 92.63 1 2250.0
1431 PA1554_tr translation of PA1554 475 86.31 93.47 0 2260.0
52564 gb|AAG04943.1|AE004583_8 (AE004583) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1] 475 86.31 93.47 0 2260.0
GC ORFID: 43804How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1557Glimmer Score:
Start: 1006664Stop: 1005237
Length: 1428
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1557 translation of PA1557Homolog Bit Score 979.0
Other Homologs: t_PA1554 (ORF: BLASTX 875.0), t_PA4133 (ORF: BLASTX 843.0), t_PA1856 (ORF: BLASTX 782.0), t_PA1557 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACCACTAACCCAGAGTCCGCCTATAACTACAAGGTGGTCCGCCAATTCGCCATCATGACCGTGGTC
TGGGGCATCGTCGGCATGACCGTCGGTGTCCTGATCGCCGCCCAGCTGGTATGGCCCGACCTGAACTTCGGC
TTGCCGTGGACGAGCTTCGGCCGCCTGCGCCCGCTGCACACCAACGCGGTGATCTTCGCCTTCGGCGGTTGC
GCACTGTTCGCCACCAGCTACTACGCGGTGCAGCGCACCTGCCAGGTGCGACTGTTCTCCGACACCCTCGCC
TCCTTCACCTTCTGGGGCTGGCAACTGGTGATCCTGCTGGCCGCCATCAGCCTGCCGCTGGGCTACACCTCG
TCCAAGGAGTACGCCGAGCTGGAGTGGCCGATCGATATCCTGATCACGGTGGTCTGGGTCGCCTACGCGGTG
GTGTTCTTCGGCACCCTGGTCAAGCGCAAGGTCAAGCACATCTATGTGGGCAACTGGTTCTTCGGCGGGTTC
ATCCTCACCGTCGCCATGCTCCACGTGGTGAACAACCTCGAGCTGCCGGTGACCTTCACCAAGTCCTACTCG
CTGTACGCCGGCGCCACCGACGCCATGGTCCAGTGGTGGTACGGGCACAACGCCGTGGGCTTCTTCCTCACC
GCCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGAGCGTCCGGTCTATTCCTACCGCCTG
TCCATCGTCCACTTCTGGGCGCTGATCGCGGTGTACATCTGGGCCGGCCCGCACCACCTGCACTACACCGCG
CTGCCGGACTGGGCACAGTCGCTGGGCATGGTGATGTCGCTGATCCTCCTGGCGCCGAGCTGGGGCGGCATG
ATCAACGGCATGATGACCCTCTCGGGCGCCTGGCATAAGCTGCGCAGCGACCCGATCCTGCGCTTCCTGGTG
GTGTCCCTGGCCTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCAACGCCCTC
TCCCACTACACCGACTGGACCATCGGCCACGTACACGCCGGCGCCCTCGGCTGGGTCGCGATGGTTTCCATC
GGCTCGCTCTACCACCTGATCCCGAAGGTCTTCGGCCGCGAGAAGATGTACAGCCTGGGCCTGATCAACGCG
CACTTCTGGCTGGCCACCATCGGTACCGTGCTTTACATCGCCTCGATGTGGGTCAACGGCATCACCCAGGGC
CTGATGTGGCGCGCGGTCAACGAGGACGGCACCCTGACCTACTCCTTCGTCGAAGCGCTGGCCGCCGGCCAC
CCCGGCTTCATCGTGCGCATGCTCGGCGGTTTCATCTTCCTGCTCGGCATGTTCCTGATGGCCTACAACACC
TGGCGCACCGTCAGTGCCGCCAAGCCGGCCGAATACGAAGCCGCCGCACAGATCGCCTGA