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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG04946.1|AE004584_2 (AE004584) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1]
Identities = 475/475 (100%), Positives = 475/475 (100%)
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Sequence:
ATGAGCACCACTAACCCAGAGTCCGCCTATAACTACAAGGTGGTCCGCCAATTCGCCATCATGACCGTGGTC
TGGGGCATCGTCGGCATGACCGTCGGTGTCCTGATCGCCGCCCAGCTGGTATGGCCCGACCTGAACTTCGGC
TTGCCGTGGACGAGCTTCGGCCGCCTGCGCCCGCTGCACACCAACGCGGTGATCTTCGCCTTCGGCGGTTGC
GCACTGTTCGCCACCAGCTACTACGCGGTGCAGCGCACCTGCCAGGTGCGACTGTTCTCCGACACCCTCGCC
TCCTTCACCTTCTGGGGCTGGCAACTGGTGATCCTGCTGGCCGCCATCAGCCTGCCGCTGGGCTACACCTCG
TCCAAGGAGTACGCCGAGCTGGAGTGGCCGATCGATATCCTGATCACGGTGGTCTGGGTCGCCTACGCGGTG
GTGTTCTTCGGCACCCTGGTCAAGCGCAAGGTCAAGCACATCTATGTGGGCAACTGGTTCTTCGGCGGGTTC
ATCCTCACCGTCGCCATGCTCCACGTGGTGAACAACCTCGAGCTGCCGGTGACCTTCACCAAGTCCTACTCG
CTGTACGCCGGCGCCACCGACGCCATGGTCCAGTGGTGGTACGGGCACAACGCCGTGGGCTTCTTCCTCACC
GCCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGAGCGTCCGGTCTATTCCTACCGCCTG
TCCATCGTCCACTTCTGGGCGCTGATCGCGGTGTACATCTGGGCCGGCCCGCACCACCTGCACTACACCGCG
CTGCCGGACTGGGCACAGTCGCTGGGCATGGTGATGTCGCTGATCCTCCTGGCGCCGAGCTGGGGCGGCATG
ATCAACGGCATGATGACCCTCTCGGGCGCCTGGCATAAGCTGCGCAGCGACCCGATCCTGCGCTTCCTGGTG
GTGTCCCTGGCCTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCAACGCCCTC
TCCCACTACACCGACTGGACCATCGGCCACGTACACGCCGGCGCCCTCGGCTGGGTCGCGATGGTTTCCATC
GGCTCGCTCTACCACCTGATCCCGAAGGTCTTCGGCCGCGAGAAGATGTACAGCCTGGGCCTGATCAACGCG
CACTTCTGGCTGGCCACCATCGGTACCGTGCTTTACATCGCCTCGATGTGGGTCAACGGCATCACCCAGGGC
CTGATGTGGCGCGCGGTCAACGAGGACGGCACCCTGACCTACTCCTTCGTCGAAGCGCTGGCCGCCGGCCAC
CCCGGCTTCATCGTGCGCATGCTCGGCGGTTTCATCTTCCTGCTCGGCATGTTCCTGATGGCCTACAACACC
TGGCGCACCGTCAGTGCCGCCAAGCCGGCCGAATACGAAGCCGCCGCACAGATCGCCTGA |
Translation:
MSTTNPESAYNYKVVRQFAIMTVVWGIVGMTVGVLIAAQLVWPDLNFGLPWTSFGRLRPLHTNAVIFAFGGC
ALFATSYYAVQRTCQVRLFSDTLASFTFWGWQLVILLAAISLPLGYTSSKEYAELEWPIDILITVVWVAYAV
VFFGTLVKRKVKHIYVGNWFFGGFILTVAMLHVVNNLELPVTFTKSYSLYAGATDAMVQWWYGHNAVGFFLT
AGFLGMMYYFVPKQAERPVYSYRLSIVHFWALIAVYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGM
INGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMVSI
GSLYHLIPKVFGREKMYSLGLINAHFWLATIGTVLYIASMWVNGITQGLMWRAVNEDGTLTYSFVEALAAGH
PGFIVRMLGGFIFLLGMFLMAYNTWRTVSAAKPAEYEAAAQIA* |
AnnotationID:811 | GeneID:802 |
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Modification Date/Time: |
2006-02-03 14:02:59 |
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GeneProduct: | putative cytochrome oxidase subunit (cbb3-type) |
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Synonyms: | PA1557, ccoN, fixN, cytN |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (12) Energy metabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN69830.1|AE016622_7 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
putida KT2440]
Length = 474
Score = 870 bits (2248), Expect = 0.0
Identities = 415/475 (87%), Positives = 440/475 (92%), Gaps = 1/475 (0%)
>gb|AAO55522.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 480
Score = 813 bits (2100), Expect = 0.0
Identities = 373/475 (78%), Positives = 424/475 (89%)
>dbj|BAC59807.1| (AP005078) cytochrome c oxidase, subunit CcoN [Vibrio
parahaemolyticus]
Length = 477
Score = 797 bits (2058), Expect = 0.0
Identities = 365/458 (79%), Positives = 411/458 (89%)
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Structural Features: | COG3278, CcoN, Cbb3-type cytochrome oxidase, subunit 1
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 482 residues, 99.8% aligned
Score = 727 bits (1877), Expect = 0.0
Identities = 370/481 (76%), Positives = 416/481 (86%), Gaps = 6/481 (1%)
pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
CD-Length = 458 residues, 88.9% aligned
Score = 242 bits (618), Expect = 8e-65
Identities = 90/433 (20%), Positives = 152/433 (35%), Gaps = 35/433 (8%)
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