ViewGene
Locus Name:
GeneID:
Location:

GeneID:801
TrivialName: PA14_11210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11210
PAO1 Ortholog Locus:PA4072
Sequence Length:1491
Protein Length:496
Start: 975501
Stop: 976991
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07459.1|AE004823_5 (AE004823) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 492/496 (99%), Positives = 494/496 (99%)
Sequence:
ATGTCCAACTCCAGACTCACCCAGCACCTGCTCCGCGGGCGGGTTGGTTTCCCCACCGCCCTGGCCAGTTCG
GTCGGGTTGATCATGGCCAGCCCGGTGATCCTCACCGCCACCACCGGCTTCGGCCTGGGCGGCGGAACCTTC
GCCGTGGCGATGCTGGTGGCGCTGCTGCTGATGCTGGCGCAGTCCACCACCTTCGCCGAGGCCGCCTGCCTG
CTGCCGACCCGTGGCTCGGTCTACGACTACCTGTCGTGCGGCCTCGGGCGCTTCTTCGCGATCACCGGCACG
CTGTCGGCCTACCTGATCGTCCATGTGTTCGCCGGCACCGCCGAAACCATGCTCAGCGGCACCATGGCGCTG
GTCAACTTCGAGTCGCTGAATACCCTCACCGAGCCGGGCGGCGGCGCCTGGCTGGTGGGTGTCGGCATGGTG
CTCTGCTTCGGCCTGCTGAATGCGCTGGGGATCACCGCCTTCGGTCGCGCCGAAGTGATCCTCACCTTCGGC
ATGTGGAGCACCCTGATGATCTTCGCCGTGGCCGGTCTGCTGCGCCTGCCCGCGGTGGAGTTGCAGGGCTGG
TTCGGGGCCTCGATGGTCGGCGACGACCTGCCGACCCTGCTGTCGCTGGTGGGCATGGCGATGTTCATGTTC
GTCGGTTGCGAATTCGTCACGCCGCTGGCGCCGGAGGTGCGCCACGCTTCGCGGACCCTGCCGCGGGCGATG
GCCCTGGGGTTGGTCGGGGTGGCCTGCTGCATGTTCCTCTATGGCGCGGCGATGCGCCGGCAGGTGGAAAAC
CTCGACCTCGGCGGCGGCCTGCACCTGCTGGAGACGCCGATGGCGATCCCGCGATTCGCCGAGCAGGTGATG
GGACCGTTCGGACGCATCTGGCTGGGCGTGGGCCTGCTGTTCGCCGGGGCCGCCACCATCAACACCCTGATG
GCCGGCCTGCCGCGGATTCTCTACGGGATGGCGCTGGATGGCGCCTTGCCGAAGGCCTTCACCTACCTGCAC
CCGCGCTTCAAGACACCGTTGCTGTGCATCGCCGTGGCAGCGGCGATTCCCTGCCTGCACGCCTGGTGGCTG
GGCGGCGACAGCGAAGGGATCATCCACCTGGTCCTGGCGGCGGTCTGCGCCTGGGGCACCGCCTACCTGCTG
GTGACCCTCTCCGTGGTGCTGCTGCGCATCCGTCGCCCGGACCTGCCGCGCGCCTACCGCTCGCCGCTGTTC
CCGTTGCCGCAGCTGTTCTCCAGCGCCGGAATCCTGCTGGGGATGTTCTACATCACGCCGCCGGGTATGAAC
CCCGCCGACATCTACCTGCCGTTCGCCCTGATGCTCGGCCTGGCGGCCGCCTACGCCCTGTTCTGGACCCTG
TGCGTACAGCGGGTGAATCCGTTCCGTCCGCTGGCGGTGGAAGAGGTGCTGGAGAAGGAATTCGCCGAAGAG
GACCAGCAGCAGCGGGAGAAGGCGCATGTCCGCCTGGGCGCGCTGGTATGA
Translation:
MSNSRLTQHLLRGRVGFPTALASSVGLIMASPVILTATTGFGLGGGTFAVAMLVALLLMLAQSTTFAEAACL
LPTRGSVYDYLSCGLGRFFAITGTLSAYLIVHVFAGTAETMLSGTMALVNFESLNTLTEPGGGAWLVGVGMV
LCFGLLNALGITAFGRAEVILTFGMWSTLMIFAVAGLLRLPAVELQGWFGASMVGDDLPTLLSLVGMAMFMF
VGCEFVTPLAPEVRHASRTLPRAMALGLVGVACCMFLYGAAMRRQVENLDLGGGLHLLETPMAIPRFAEQVM
GPFGRIWLGVGLLFAGAATINTLMAGLPRILYGMALDGALPKAFTYLHPRFKTPLLCIAVAAAIPCLHAWWL
GGDSEGIIHLVLAAVCAWGTAYLLVTLSVVLLRIRRPDLPRAYRSPLFPLPQLFSSAGILLGMFYITPPGMN
PADIYLPFALMLGLAAAYALFWTLCVQRVNPFRPLAVEEVLEKEFAEEDQQQREKAHVRLGALV*
AnnotationID:810GeneID:801
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:39
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA4072
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22000.1| (AE008843) putative amino acid transporter [Salmonella typhimurium
           LT2]
          Length = 499

 Score =  657 bits (1695), Expect = 0.0
 Identities = 321/489 (65%), Positives = 384/489 (78%), Gaps = 2/489 (0%)

>gb|AAO70594.1| (AE016844) possible amino acid transport protein [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 499

 Score =  656 bits (1693), Expect = 0.0
 Identities = 320/489 (65%), Positives = 384/489 (78%), Gaps = 2/489 (0%)








 
Structural Features:
COG0531, PotE, Amino acid transporters 
[Amino acid transport and metabolism]
CD-Length = 466 residues,  94.4% aligned
Score =  143 bits (362), Expect = 4e-35
Identities = 106/445 (23%), Positives = 185/445 (41%), Gaps = 5/445 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1605




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18747




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36821




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:801_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:801
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1429
                           PA4072_tr
                           translation of PA4072
                           496
                           99.19
                           99.59
                           0
                           2533.0
     

     
     
52558
                           gb|AAG07459.1|AE004823_5
                           (AE004823) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           496
                           99.19
                           99.59
                           0
                           2533.0
     

     
     
52559
                           emb|CAE16645.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           503
                           65.60
                           79.32
                           13
                           1711.0
     

     
     
52560
                           gb|AAL22000.1|
                           (AE008843) putative amino acid transporter [Salmonella typhimurium LT2]
                           499
                           65.13
                           77.15
                           3
                           1689.0
     

     
     
52561
                           gb|AAO70594.1|
                           (AE016844) possible amino acid transport protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           499
                           64.92
                           77.15
                           3
                           1687.0
     

     






      

          
GC ORFID: 43803How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4072Glimmer Score: 

          
Start: 3978436Stop: 3976946

          
Length: 1491


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4072 translation of PA4072Homolog Bit Score 980.0

          
Other Homologs:  t_PA4072 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAACTCCAGACTCACCCAGCACCTGCTCCGCGGGCGGGTTGGTTTCCCCACCGCCCTGGCCAGTTCG 
GTCGGGTTGATCATGGCCAGCCCGGTGATCCTCACCGCCACCACCGGCTTCGGCCTGGGCGGCGGAACCTTC 
GCCGTGGCGATGCTGGTGGCGCTGCTGCTGATGCTGGCGCAGTCCACCACCTTCGCCGAGGCCGCCTGCCTG 
CTGCCGACCCGTGGCTCGGTCTACGACTACCTGTCGTGCGGCCTCGGGCGCTTCTTCGCGATCACCGGCACG 
CTGTCGGCCTACCTGATCGTCCATGTGTTCGCCGGCACCGCCGAAACCATGCTCAGCGGCACCATGGCGCTG 
GTCAACTTCGAGTCGCTGAATACCCTCACCGAGCCGGGCGGCGGCGCCTGGCTGGTGGGTGTCGGCATGGTG 
CTCTGCTTCGGCCTGCTGAATGCGCTGGGGATCACCGCCTTCGGTCGCGCCGAAGTGATCCTCACCTTCGGC 
ATGTGGAGCACCCTGATGATCTTCGCCGTGGCCGGTCTGCTGCGCCTGCCCGCGGTGGAGTTGCAGGGCTGG 
TTCGGGGCCTCGATGGTCGGCGACGACCTGCCGACCCTGCTGTCGCTGGTGGGCATGGCGATGTTCATGTTC 
GTCGGTTGCGAATTCGTCACGCCGCTGGCGCCGGAGGTGCGCCACGCTTCGCGGACCCTGCCGCGGGCGATG 
GCCCTGGGGTTGGTCGGGGTGGCCTGCTGCATGTTCCTCTATGGCGCGGCGATGCGCCGGCAGGTGGAAAAC 
CTCGACCTCGGCGGCGGCCTGCACCTGCTGGAGACGCCGATGGCGATCCCGCGATTCGCCGAGCAGGTGATG 
GGACCGTTCGGACGCATCTGGCTGGGCGTGGGCCTGCTGTTCGCCGGGGCCGCCACCATCAACACCCTGATG 
GCCGGCCTGCCGCGGATTCTCTACGGGATGGCGCTGGATGGCGCCTTGCCGAAGGCCTTCACCTACCTGCAC 
CCGCGCTTCAAGACACCGTTGCTGTGCATCGCCGTGGCAGCGGCGATTCCCTGCCTGCACGCCTGGTGGCTG 
GGCGGCGACAGCGAAGGGATCATCCACCTGGTCCTGGCGGCGGTCTGCGCCTGGGGCACCGCCTACCTGCTG 
GTGACCCTCTCCGTGGTGCTGCTGCGCATCCGTCGCCCGGACCTGCCGCGCGCCTACCGCTCGCCGCTGTTC 
CCGTTGCCGCAGCTGTTCTCCAGCGCCGGAATCCTGCTGGGGATGTTCTACATCACGCCGCCGGGTATGAAC 
CCCGCCGACATCTACCTGCCGTTCGCCCTGATGCTCGGCCTGGCGGCCGCCTACGCCCTGTTCTGGACCCTG 
TGCGTACAGCGGGTGAATCCGTTCCGTCCGCTGGCGGTGGAAGAGGTGCTGGAGAAGGAATTCGCCGAAGAG 
GACCAGCAGCAGCGGGAGAAGGCGCATGTCCGCCTGGGCGCGCTGGTATGA