ViewGene
Locus Name:
GeneID:
Location:

GeneID:800
TrivialName: PA14_70140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70140
PAO1 Ortholog Locus:PA5312
Sequence Length:1494
Protein Length:497
Start: 6256837
Stop: 6255344
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08697.1|AE004944_1 (AE004944) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 496/497 (99%), Positives = 496/497 (99%)
Sequence:
ATGACCACCCTGACCCGCGCCGACTGGGAAGCCCGCGCCAAAGACCTGAAGATCGAAGGCCGCGCCTTCGTC
AACGGCGAATACAGCAACGCCGCCTCCGGCGAGACCTTCGATTGCCTGAGCCCGGTGGATGGCCGCTTCCTG
GCCAAGGTCGCCAGTTGCGACCTGGCCGATGCCGAGCAGGCGGTCAAGGTCGCTCGCAATGCCTTCGATTCC
GGCGCCTGGTCGCGCCTGGCGCCGGCCAAGCGCAAGCAGGCGATGATCCGCTTCGCCGATCTGCTGCTGGAG
AACGCCGAGGAGCTGGCCCTGCTGGAAACCCTGGACATGGGCAAGCCGATCAGCGACTCGCTGCACATCGAT
GTCGCCAGCGCCGCCAACAGCCTGCGCTGGAGCGCCGAGGCGATCGACAAGATCTATGACGAAGTCGCCGCC
ACTCCCCATGCCGAGCTGGGCCTGGTGACCCGCGAGCCGGTCGGCGTGGTCGCCGCCATCGTGCCGTGGAAC
TTCCCGCTGCTGATGTCCTGCTGGAAACTCGGTCCTGCCCTGGCCACCGGCAACTCGGTGATCCTCAAGCCC
TCCGAGAAGTCGCCGCTGACCGCCATCCGCATCGCCCAGCTGGCCGTCGAGGCCGGCATTCCGAAAGGCGTG
TTCAACGTGCTGCCGGGCTACGGCCACACGGTAGGCAAGGCGCTGGCACTGCACATGGATGTCGACACCCTG
GTGTTCACCGGTTCGACCAAGATCGCCAAGCAACTGATGGTCTATGCCGGCGAGTCGAACATGAAACGCGTC
TGGCTGGAGGCCGGCGGCAAGAGCCCGAACATCGTCTTCGCCGACGCCCCGGACCTGAAGGCCGCCGCCGAA
GCCGCTGCCGGCGCCATCGCCTTCAACCAGGGCGAAGTCTGCACCGCCGGTTCGCGCCTGCTGGTGGAGCGC
TCCATCAAGGACAAGTTCCTGCCCCTGGTGATCGAGGCCCTCAAGGGCTGGAAGCCGGGCAACCCGCTGGAT
CCGGAAACCAACGTCGGCGCGCTGGTGGACACCCAGCAGATGAACACCGTGCTGTCCTACATCGAGGCCGGT
CACAACGACGGTGCCAAGCTGGTTGCCGGCGGCAAGCGGACCCTGGAAGAAACCGGCGGCACCTACGTCGAG
CCGACCATCTTCGACGGCGTGACCAATGCGATGAAGATCGCCCGTGAGGAGATCTTCGGCCCGGTGCTCTCG
GTGATCGAGTTCGAGGATGCCGAGGAGGCCGTGCGCATCGCCAACGACACGCCCTATGGGCTGGCGGCGGCG
GTCTGGACCAGCAACCTGTCCAAGGCGCACCTGACTGCCAAGGCCCTGCGCGCCGGCAGCGTCTGGGTCAAC
CAGTACGACGGCGGCGACATGACCGCTCCGTTCGGCGGCTTCAAGCAGTCGGGCAACGGTCGCGACAAGTCG
CTGCACGCCTTCGACAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTCTGA
Translation:
MTTLTRADWEARAKDLKIEGRAFVNGEYSNAASGETFDCLSPVDGRFLAKVASCDLADAEQAVKVARNAFDS
GAWSRLAPAKRKQAMIRFADLLLENAEELALLETLDMGKPISDSLHIDVASAANSLRWSAEAIDKIYDEVAA
TPHAELGLVTREPVGVVAAIVPWNFPLLMSCWKLGPALATGNSVILKPSEKSPLTAIRIAQLAVEAGIPKGV
FNVLPGYGHTVGKALALHMDVDTLVFTGSTKIAKQLMVYAGESNMKRVWLEAGGKSPNIVFADAPDLKAAAE
AAAGAIAFNQGEVCTAGSRLLVERSIKDKFLPLVIEALKGWKPGNPLDPETNVGALVDTQQMNTVLSYIEAG
HNDGAKLVAGGKRTLEETGGTYVEPTIFDGVTNAMKIAREEIFGPVLSVIEFEDAEEAVRIANDTPYGLAAA
VWTSNLSKAHLTAKALRAGSVWVNQYDGGDMTAPFGGFKQSGNGRDKSLHAFDKYTELKATWIKL*
AnnotationID:809GeneID:800
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:15
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:aldH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70843.1|AE016729_1 (AE016793) aldehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 497

 Score =  874 bits (2258), Expect = 0.0
 Identities = 429/497 (86%), Positives = 464/497 (93%)

>gb|AAO53646.1| (AE016856) aldehyde dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 497

 Score =  872 bits (2253), Expect = 0.0
 Identities = 428/497 (86%), Positives = 467/497 (93%)

>gb|AAN56489.1|AE015786_3 (AE015786) aldehyde dehydrogenase [Shewanella oneidensis MR-1]
          Length = 498

 Score =  764 bits (1972), Expect = 0.0
 Identities = 375/496 (75%), Positives = 422/496 (85%)






 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. 
CD-Length = 464 residues, 100.0% aligned
Score =  518 bits (1336), Expect = 6e-148
Identities = 232/471 (49%), Positives = 316/471 (67%), Gaps = 8/471 (1%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.2% aligned
Score =  485 bits (1250), Expect = 4e-138
Identities = 229/479 (47%), Positives = 309/479 (64%), Gaps = 13/479 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34794




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:800_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:800
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1424
                           PA5312_tr
                           translation of PA5312
                           497
                           99.79
                           99.79
                           0
                           2538.0
     

     
     
52397
                           gb|AAG08697.1|AE004944_1
                           (AE004944) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           497
                           99.79
                           99.79
                           0
                           2538.0
     

     
     
52398
                           gb|AAN70843.1|AE016729_1
                           (AE016793) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           497
                           86.31
                           93.36
                           0
                           2258.0
     

     
     
52399
                           gb|AAO53646.1|
                           (AE016856) aldehyde dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           497
                           86.11
                           93.96
                           0
                           2253.0
     

     
     
52400
                           gb|AAN56489.1|AE015786_3
                           (AE015786) aldehyde dehydrogenase [Shewanella oneidensis MR-1]
                           498
                           75.30
                           84.73
                           1
                           1971.0
     

     






      

          
GC ORFID: 43802How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5312Glimmer Score: 

          
Start: 5520526Stop: 5519033

          
Length: 1494


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5312 translation of PA5312Homolog Bit Score 982.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3152 (ORF: BLASTX 871.0), t_PA0219 (ORF: BLASTX 554.0), t_PA4189 (ORF: BLASTX 451.0), t_PA4073 (ORF: BLASTX 375.0), t_PA5373 (ORF: BLASTX 375.0), psyr_15may02_Scaffold1_revised_gene155 (ORF: BLASTX 362.0), psyr_15may02_Scaffold6_revised_gene6625 (ORF: BLASTX 361.0), t_PA5312 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCCTGACCCGCGCCGACTGGGAAGCCCGCGCCAAAGACCTGAAGATCGAAGGCCGCGCCTTCGTC 
AACGGCGAATACAGCAACGCCGCCTCCGGCGAGACCTTCGATTGCCTGAGCCCGGTGGATGGCCGCTTCCTG 
GCCAAGGTCGCCAGTTGCGACCTGGCCGATGCCGAGCAGGCGGTCAAGGTCGCTCGCAATGCCTTCGATTCC 
GGCGCCTGGTCGCGCCTGGCGCCGGCCAAGCGCAAGCAGGCGATGATCCGCTTCGCCGATCTGCTGCTGGAG 
AACGCCGAGGAGCTGGCCCTGCTGGAAACCCTGGACATGGGCAAGCCGATCAGCGACTCGCTGCACATCGAT 
GTCGCCAGCGCCGCCAACAGCCTGCGCTGGAGCGCCGAGGCGATCGACAAGATCTATGACGAAGTCGCCGCC 
ACTCCCCATGCCGAGCTGGGCCTGGTGACCCGCGAGCCGGTCGGCGTGGTCGCCGCCATCGTGCCGTGGAAC 
TTCCCGCTGCTGATGTCCTGCTGGAAACTCGGTCCTGCCCTGGCCACCGGCAACTCGGTGATCCTCAAGCCC 
TCCGAGAAGTCGCCGCTGACCGCCATCCGCATCGCCCAGCTGGCCGTCGAGGCCGGCATTCCGAAAGGCGTG 
TTCAACGTGCTGCCGGGCTACGGCCACACGGTAGGCAAGGCGCTGGCACTGCACATGGATGTCGACACCCTG 
GTGTTCACCGGTTCGACCAAGATCGCCAAGCAACTGATGGTCTATGCCGGCGAGTCGAACATGAAACGCGTC 
TGGCTGGAGGCCGGCGGCAAGAGCCCGAACATCGTCTTCGCCGACGCCCCGGACCTGAAGGCCGCCGCCGAA 
GCCGCTGCCGGCGCCATCGCCTTCAACCAGGGCGAAGTCTGCACCGCCGGTTCGCGCCTGCTGGTGGAGCGC 
TCCATCAAGGACAAGTTCCTGCCCCTGGTGATCGAGGCCCTCAAGGGCTGGAAGCCGGGCAACCCGCTGGAT 
CCGGAAACCAACGTCGGCGCGCTGGTGGACACCCAGCAGATGAACACCGTGCTGTCCTACATCGAGGCCGGT 
CACAACGACGGTGCCAAGCTGGTTGCCGGCGGCAAGCGGACCCTGGAAGAAACCGGCGGCACCTACGTCGAG 
CCGACCATCTTCGACGGCGTGACCAATGCGATGAAGATCGCCCGTGAGGAGATCTTCGGCCCGGTGCTCTCG 
GTGATCGAGTTCGAGGATGCCGAGGAGGCCGTGCGCATCGCCAACGACACGCCCTATGGGCTGGCGGCGGCG 
GTCTGGACCAGCAACCTGTCCAAGGCGCACCTGACTGCCAAGGCCCTGCGCGCCGGCAGCGTCTGGGTCAAC 
CAGTACGACGGCGGCGACATGACCGCTCCGTTCGGCGGCTTCAAGCAGTCGGGCAACGGTCGCGACAAGTCG 
CTGCACGCCTTCGACAAGTACACCGAGCTGAAGGCGACCTGGATCAAGCTCTGA