ViewGene

Locus Name:
GeneID:
Location:

GeneID:799
TrivialName: PA14_59920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59920
PAO1 Ortholog Locus:
Sequence Length:1506
Protein Length:501
Start: 5335128
Stop: 5336633
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84151.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 500/501 (99%), Positives = 500/501 (99%)
Sequence:
GTGGCGCTGACCGGTAATCCCCTCCTGAAATTGCTGGTCGTCCCCGTCGTGATCGGCGCCATCCTGATCGGC
GTGAGCATGATGGGCAAGAAAGAAAGTGCGCAGTCACAAGGCGCCGCAACCCCGACGGTAACGTCGGAAGAA
GCGGCAACCCTGGGCATCGACGGCGACACGCCCGCCGACACACTACGCACCATCGTGGCGGAAAGCCGGCAG
CTCAAGGACCAGATCAGCAAGGTGATCCAGGAGAATGACTCGCTCAAAGCCGCCAATGAGAACCTGCAGGGC
CGCCTGCGCAACATCGATCAGAACATCGAGCAGAAGCTCAACAACACCGCCCAGGAACTGCAGCAACAGCAG
GAAAACCGTAGCCAGACGATCCTGGACCAGGTACAGAAACGGCTCGAGAACCTAACCCACATTCCCGAGGCC
GGTGACACCGACCTGCCCGTAGGATTCGGCGTGCGACCAAAGGATGGCCAGCACTTTCAGGGAGCGGGCTCG
TCTTCATCGGATATCGTCTGGATCGAGCCCCAGGACGCCCGCGCGGTTGATGCCAATGGCCAGCCGCTGGCC
GCCGGCTCCACCACCCAACCGAGCGGATTCAGCTTCCCGACCTCCTTCGGCAATGCGGTCGATCGCGGACAG
AACGCGCTGGAGCGGATCGATGACGGGCTGCACCCCGTCGGCCAACAGCGATCTGACCTGGAAAACCGCAAG
CTCGTCCGTAAGACCTACACGCTGCCGCAGAACTCGACGCTCATGGGCTCGGTGGCCATGTCTGCGCTGATC
GGTCGTGTGCCGGTCGACGGGACGGTCAATGATCCTTACCCGTTCAAAATCCTCATCGGCCCGGACAACCTC
ACCGCCAACGGCATCGAGCTGCCGGACGTCGCCGGCGCGGTAGCCAGCGGGACCGCCTCGGGCGACTGGACA
CTCTCCTGCGTGCGTGGGCAGATCCGCAGCCTCACGTTCGTGTTCAACGACGGGACCGTGCGCACCTTCCCG
GCGCCGGCCGAGGAGGTGAATGACAACCAGAGCAACAACAACCAGACCGCCAGCGCCGACCAGAAAACCATC
CAGGGCGGCCTCGGCTGGATCAGCGACCCCTACGGCATCCCATGCATCGCCGGTGATCGCCGATCCAATGCC
AAGGAGTACCTGGGCAATCAGAGCCTACTCACGGCTGCCGGGGCCGGCATTGCCAAGCTCCTGGACGCCGAC
GAGAACAACACCAGTACCGTCTTCAGCGGCAACGGCACCAGCTTCGGGACGACCGGAACCAACAGCAACTCG
GCCCTCAACAGCATCCTCTCCGGCGGCGTCAGCGACATCCGGCAGTGGATGAACAAGTTGTACGGGGAGGCC
TTCGCCGCCGTCTACGTGCAGCCAGGTGCGCGGGTCGCAGTGCATCTCGATCAGCAACTGGCGATCGACTAT
GAACTCAAGGGCCGCAAGGTCGATTACAGCTCTGGAGCCGCTCATGCAACAGCAGACTTGGACTAA
Translation:
MALTGNPLLKLLVVPVVIGAILIGVSMMGKKESAQSQGAATPTVTSEEAATLGIDGDTPADTLRTIVAESRQ
LKDQISKVIQENDSLKAANENLQGRLRNIDQNIEQKLNNTAQELQQQQENRSQTILDQVQKRLENLTHIPEA
GDTDLPVGFGVRPKDGQHFQGAGSSSSDIVWIEPQDARAVDANGQPLAAGSTTQPSGFSFPTSFGNAVDRGQ
NALERIDDGLHPVGQQRSDLENRKLVRKTYTLPQNSTLMGSVAMSALIGRVPVDGTVNDPYPFKILIGPDNL
TANGIELPDVAGAVASGTASGDWTLSCVRGQIRSLTFVFNDGTVRTFPAPAEEVNDNQSNNNQTASADQKTI
QGGLGWISDPYGIPCIAGDRRSNAKEYLGNQSLLTAAGAGIAKLLDADENNTSTVFSGNGTSFGTTGTNSNS
ALNSILSGGVSDIRQWMNKLYGEAFAAVYVQPGARVAVHLDQQLAIDYELKGRKVDYSSGAAHATADLD*
AnnotationID:808GeneID:799
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 21:09:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO71725.1| (AE016848) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 492

 Score =  338 bits (868), Expect = 4e-92
 Identities = 193/504 (38%), Positives = 286/504 (56%), Gaps = 41/504 (8%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:14223
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17081
Author/Investigator(s):
Title: CDD-search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:NCBI CD-799.htm
URL:
ReferenceID:18743
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:799

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
52390 gb|AAP84151.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 501 99.60 99.80 0 2540.0
52391 gb|AAO54396.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 510 58.62 76.07 21 1549.0
52392 emb|CAE92913.1| (AJ617740) hypothetical protein [Pseudomonas putida] 508 49.40 66.33 43 1207.0
52394 gb|AAN62143.1|AF440523_50 (AF440523) hypothetical protein [Pseudomonas aeruginosa] 512 48.82 65.82 51 1188.0
52393 gb|AAM37126.1| (AE011864) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 515 48.54 65.43 39 1202.0
GC ORFID: 43801How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL024Glimmer Score:
Start: 4598807Stop: 4600312
Length: 1506
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_RL024 501 Homolog: XAC2273 / Hypothetical protein / X. axonopodis pv. citri / 306 (AAM37126) translation of RL024Homolog Bit Score 984.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1642 (ORF: BLASTX 590.0), t_RL024 (ORF: GLIMMER)
GC ORF Sequence
GTGGCGCTGACCGGTAATCCCCTCCTGAAATTGCTGGTCGTCCCCGTCGTGATCGGCGCCATCCTGATCGGC
GTGAGCATGATGGGCAAGAAAGAAAGTGCGCAGTCACAAGGCGCCGCAACCCCGACGGTAACGTCGGAAGAA
GCGGCAACCCTGGGCATCGACGGCGACACGCCCGCCGACACACTACGCACCATCGTGGCGGAAAGCCGGCAG
CTCAAGGACCAGATCAGCAAGGTGATCCAGGAGAATGACTCGCTCAAAGCCGCCAATGAGAACCTGCAGGGC
CGCCTGCGCAACATCGATCAGAACATCGAGCAGAAGCTCAACAACACCGCCCAGGAACTGCAGCAACAGCAG
GAAAACCGTAGCCAGACGATCCTGGACCAGGTACAGAAACGGCTCGAGAACCTAACCCACATTCCCGAGGCC
GGTGACACCGACCTGCCCGTAGGATTCGGCGTGCGACCAAAGGATGGCCAGCACTTTCAGGGAGCGGGCTCG
TCTTCATCGGATATCGTCTGGATCGAGCCCCAGGACGCCCGCGCGGTTGATGCCAATGGCCAGCCGCTGGCC
GCCGGCTCCACCACCCAACCGAGCGGATTCAGCTTCCCGACCTCCTTCGGCAATGCGGTCGATCGCGGACAG
AACGCGCTGGAGCGGATCGATGACGGGCTGCACCCCGTCGGCCAACAGCGATCTGACCTGGAAAACCGCAAG
CTCGTCCGTAAGACCTACACGCTGCCGCAGAACTCGACGCTCATGGGCTCGGTGGCCATGTCTGCGCTGATC
GGTCGTGTGCCGGTCGACGGGACGGTCAATGATCCTTACCCGTTCAAAATCCTCATCGGCCCGGACAACCTC
ACCGCCAACGGCATCGAGCTGCCGGACGTCGCCGGCGCGGTAGCCAGCGGGACCGCCTCGGGCGACTGGACA
CTCTCCTGCGTGCGTGGGCAGATCCGCAGCCTCACGTTCGTGTTCAACGACGGGACCGTGCGCACCTTCCCG
GCGCCGGCCGAGGAGGTGAATGACAACCAGAGCAACAACAACCAGACCGCCAGCGCCGACCAGAAAACCATC
CAGGGCGGCCTCGGCTGGATCAGCGACCCCTACGGCATCCCATGCATCGCCGGTGATCGCCGATCCAATGCC
AAGGAGTACCTGGGCAATCAGAGCCTACTCACGGCTGCCGGGGCCGGCATTGCCAAGCTCCTGGACGCCGAC
GAGAACAACACCAGTACCGTCTTCAGCGGCAACGGCACCAGCTTCGGGACGACCGGAACCAACAGCAACTCG
GCCCTCAACAGCATCCTCTCCGGCGGCGTCAGCGACATCCGGCAGTGGATGAACAAGTTGTACGGGGAGGCC
TTCGCCGCCGTCTACGTGCAGCCAGGTGCGCGGGTCGCAGTGCATCTCGATCAGCAACTGGCGATCGACTAT
GAACTCAAGGGCCGCAAGGTCGATTACAGCTCTGGAGCCGCTCATGCAACAGCAGACTTGGACTAA