ViewGene

Locus Name:
GeneID:
Location:

GeneID:798
TrivialName: PA14_67260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67260
PAO1 Ortholog Locus:PA5093
Sequence Length:1533
Protein Length:510
Start: 6007904
Stop: 6006372
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08478.1|AE004922_3 (AE004922) probable histidine/phenylalanine ammonia-lyase [Pseudomonas aeruginosa PAO1]
Identities = 510/510 (100%), Positives = 510/510 (100%)
Sequence:
ATGAGCGACCTACCGAGCGTCGTGTTCGGCGACGGTCCGCTGCGTTGGCAGGAACTGGTCGCGGTGGCCCGG
CACGGTGCGCGCCTGGAACTGTCGGCGGCGGCCTGGGCACGGATCGACAACGCCCGCGCCATCGTCTGCCGT
ATCGTCGCCAATGGCGAGCGTGCCTACGGCATCAGTACCGGCCTCGGCGCGCTGTGCGACGTCCTGCTGGAA
GGCGAGCAGCTCGCCGAGCTGTCGCGCAACACCTTGCTCAGCCATGCCTGCGGGGTCGGCGAGCCGCTGCGC
GACGAACAGACCCGGGCGATCATCTGTGCCGCCGTCGCCAACTACAGCCAGGGTAAGTCCGGGCTCGACCGT
TCGCTGGTGGAAGGGCTGCTGGCGCTGCTCAACCACGGGATTACCCCGCAGGTGCCGGCCCAGGGCTCGGTG
GGCTACCTGACCCACATGGCGCACGTCGGCATCGCCCTGCTCGGCATCGGCGAGGTCAGCTACCGCGGCAGC
GTCGTGCCGGCCGCCGCCGCGTTGGCGGCGGAAGGCCTGGCGACGGTGCGCCTGGGAGCCAAGGACGGGCTC
TGCCTGGTCAACGGCACGCCGTGCATGACCGGCCTCGCCTGCCTGGCCCTGGACGACGCGCAGCGCCTGGCG
CAGTGGGCCGACGTGATCGGGGCGATGAGCTTCGAGGCCCTGCGCGGCCAACTGGCGGCGTTCGACGCCGAG
ATCGTTGCGCTCAAGCCGCATCCCGGGATGCAGCGGGTCGCCGCCAATCTGCGGGCCTTGCTGGCTGGCAGC
CAGGTGCTGGAGAACGCCCGCGGCATCCGCACCCAGGATGCCCTGAGCATCCGCTCGATACCGCAGATCCAT
GGCGCCTGCCGTGACCAGTTGGCCCACGCGGCGCGGCAGATAGAGACCGAACTCAACTCGGCCACCGACAAC
CCGCTGCTGCTGGGTACGCCGGAGGCCTACCGGGTGGTATCCCAGGCCAATCCCCACGGCGAATCGGTGGCG
ATGGCCGCCGACCTGCTGGCGATCGCCGTGGCCGAGCTGGGCGGGGTCGCCGAGCGGCGCCTGGATCGCCTG
GTCAACCCGCTGGTCAGCGGCCTGCCGGCGTTCCTGGTGGGCAAGCCGGGAGTCAACTCGGGGATGATGATC
ACCCAGTACGTCGCCGCCTCCCTGGCCGGCGAGAATCGCCAGCTGGCGCAGCCGGCGGTGGTCGACAACTTC
GTCACCTCGGCGCTCCAGGAGGACCACCTGAGCCTCGGCACCAGTGCCGCGCTCAAGCTTGGCAGGGCCCTG
GAGAACCTCCGGCGGATCCTCGCCATCGAGTACCTGCTGGCCGCCCAGGCCTTCGAATTCCTCGCCCCGCAA
CGCTTCGGCCAGGGCACCGCGGCGGCCTGGGGCATCCTGCGCGAGCGCGTGCCCGCGTACGACACCGACCGC
TGGCTGGCTCCTGACATCGCCAGCGCGGCGGCCATCCTCGGCGAGCGGAAGAGTCTCGCCCGGCTGGCCGCG
AGCATAGGAGACCTGCAATGA
Translation:
MSDLPSVVFGDGPLRWQELVAVARHGARLELSAAAWARIDNARAIVCRIVANGERAYGISTGLGALCDVLLE
GEQLAELSRNTLLSHACGVGEPLRDEQTRAIICAAVANYSQGKSGLDRSLVEGLLALLNHGITPQVPAQGSV
GYLTHMAHVGIALLGIGEVSYRGSVVPAAAALAAEGLATVRLGAKDGLCLVNGTPCMTGLACLALDDAQRLA
QWADVIGAMSFEALRGQLAAFDAEIVALKPHPGMQRVAANLRALLAGSQVLENARGIRTQDALSIRSIPQIH
GACRDQLAHAARQIETELNSATDNPLLLGTPEAYRVVSQANPHGESVAMAADLLAIAVAELGGVAERRLDRL
VNPLVSGLPAFLVGKPGVNSGMMITQYVAASLAGENRQLAQPAVVDNFVTSALQEDHLSLGTSAALKLGRAL
ENLRRILAIEYLLAAQAFEFLAPQRFGQGTAAAWGILRERVPAYDTDRWLAPDIASAAAILGERKSLARLAA
SIGDLQ*
AnnotationID:807GeneID:798
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:probable histidine/phenylalanine ammonia-lyase
Cell Localization:()
Synonyms:PA5093
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01441,pfam00221,cd00332,cd01442
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:4.3.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58700.1| (AE016875) histidine ammonia-lyase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 513

 Score =  770 bits (1989), Expect = 0.0
 Identities = 388/502 (77%), Positives = 442/502 (88%)

>emb|CAC47282.1| (AL591791) PUTATIVE HISTIDINE AMMONIA-LYASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 499

 Score =  443 bits (1139), Expect = e-123
Identities = 249/477 (52%), Positives = 313/477 (65%), Gaps = 4/477 (0%)

>dbj|BAB47798.1| (AP002994) histidine ammonia-lyase [Mesorhizobium loti]
          Length = 500

 Score =  396 bits (1017), Expect = e-109
 Identities = 218/481 (45%), Positives = 302/481 (62%), Gaps = 2/481 (0%)

Structural Features:
cd01441, HAL, Histidine ammonia-lyase (HAL) catalyzes the first step in the 
degradation of histidine to glutamate.
CD-Length = 486 residues, 100.0% aligned
Score =  592 bits (1528), Expect = 3e-170

pfam00221, PAL, Phenylalanine and histidine ammonia-lyase.
CD-Length = 487 residues,  99.8% aligned
Score =  376 bits (967), Expect = 3e-105
Identities = 197/488 (40%), Positives = 277/488 (56%), Gaps = 18/488 (3%)

cd00332, PAL-HAL, Histidine ammonia-lyase (HAL) and phenylalanine 
ammonia-lyase (PAL).
CD-Length = 508 residues,  99.0% aligned
Score =  292 bits (749), Expect = 6e-80

cd01442, PAL, Phenylalanine ammonia-lyase (PAL)
CD-Length = 510 residues,  90.8% aligned
Score =  240 bits (614), Expect = 3e-64
Genomic Context:
Comment:
ReferenceID:1599
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18741
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34972
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:798_cdd.html
URL:
ReferenceID:35815
Author/Investigator(s): Consevage MW, Phillips AT.
Title: Sequence analysis of the hutH gene encoding histidine ammonia-lyase in Pseudomonas putida.
PubMed: 2332400
MedLine:
Source:
J Bacteriol. 1990 May;172(5):2224-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2332400
ReferenceID:35816
Author/Investigator(s): Wu PC, Kroening TA, White PJ, Kendrick KE.
Title: Purification of histidase from Streptomyces griseus and nucleotide sequence of the hutH structural gene.
PubMed: 1537807
MedLine:
Source:
J Bacteriol. 1992 Mar;174(5):1647-55.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1537807
Homologs By Global Alignment
Gene ID:798

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1422 PA5093_tr translation of PA5093 510 99.99 99.99 0 2543.0
52353 gb|AAG08478.1|AE004922_3 (AE004922) probable histidine/phenylalanine ammonia-lyase [Pseudomonas aeruginosa PAO1] 510 99.99 99.99 0 2543.0
52354 gb|AAO58700.1| (AE016875) histidine ammonia-lyase [Pseudomonas syringae pv. tomato str. DC3000] 517 75.43 86.26 11 1987.0
52355 emb|CAC47282.1| (AL591791) PUTATIVE HISTIDINE AMMONIA-LYASE PROTEIN [Sinorhizobium meliloti] 512 50.00 63.47 15 1149.0
52356 gb|AAL44613.1| (AE009311) histidase [Agrobacterium tumefaciens str. C58 (U. Washington)] 512 48.63 63.08 14 1114.0
GC ORFID: 43800How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5093Glimmer Score:
Start: 5271589Stop: 5270057
Length: 1533
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5093 translation of PA5093Homolog Bit Score 984.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6902 (ORF: BLASTX 775.0), psyr_15may02_Scaffold6_revised_gene6903 (ORF: BLASTX 328.0), t_PA5098 (ORF: BLASTX 327.0), t_PA5093 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGACCTACCGAGCGTCGTGTTCGGCGACGGTCCGCTGCGTTGGCAGGAACTGGTCGCGGTGGCCCGG
CACGGTGCGCGCCTGGAACTGTCGGCGGCGGCCTGGGCACGGATCGACAACGCCCGCGCCATCGTCTGCCGT
ATCGTCGCCAATGGCGAGCGTGCCTACGGCATCAGTACCGGCCTCGGCGCGCTGTGCGACGTCCTGCTGGAA
GGCGAGCAGCTCGCCGAGCTGTCGCGCAACACCTTGCTCAGCCATGCCTGCGGGGTCGGCGAGCCGCTGCGC
GACGAACAGACCCGGGCGATCATCTGTGCCGCCGTCGCCAACTACAGCCAGGGTAAGTCCGGGCTCGACCGT
TCGCTGGTGGAAGGGCTGCTGGCGCTGCTCAACCACGGGATTACCCCGCAGGTGCCGGCCCAGGGCTCGGTG
GGCTACCTGACCCACATGGCGCACGTCGGCATCGCCCTGCTCGGCATCGGCGAGGTCAGCTACCGCGGCAGC
GTCGTGCCGGCCGCCGCCGCGTTGGCGGCGGAAGGCCTGGCGACGGTGCGCCTGGGAGCCAAGGACGGGCTC
TGCCTGGTCAACGGCACGCCGTGCATGACCGGCCTCGCCTGCCTGGCCCTGGACGACGCGCAGCGCCTGGCG
CAGTGGGCCGACGTGATCGGGGCGATGAGCTTCGAGGCCCTGCGCGGCCAACTGGCGGCGTTCGACGCCGAG
ATCGTTGCGCTCAAGCCGCATCCCGGGATGCAGCGGGTCGCCGCCAATCTGCGGGCCTTGCTGGCTGGCAGC
CAGGTGCTGGAGAACGCCCGCGGCATCCGCACCCAGGATGCCCTGAGCATCCGCTCGATACCGCAGATCCAT
GGCGCCTGCCGTGACCAGTTGGCCCACGCGGCGCGGCAGATAGAGACCGAACTCAACTCGGCCACCGACAAC
CCGCTGCTGCTGGGTACGCCGGAGGCCTACCGGGTGGTATCCCAGGCCAATCCCCACGGCGAATCGGTGGCG
ATGGCCGCCGACCTGCTGGCGATCGCCGTGGCCGAGCTGGGCGGGGTCGCCGAGCGGCGCCTGGATCGCCTG
GTCAACCCGCTGGTCAGCGGCCTGCCGGCGTTCCTGGTGGGCAAGCCGGGAGTCAACTCGGGGATGATGATC
ACCCAGTACGTCGCCGCCTCCCTGGCCGGCGAGAATCGCCAGCTGGCGCAGCCGGCGGTGGTCGACAACTTC
GTCACCTCGGCGCTCCAGGAGGACCACCTGAGCCTCGGCACCAGTGCCGCGCTCAAGCTTGGCAGGGCCCTG
GAGAACCTCCGGCGGATCCTCGCCATCGAGTACCTGCTGGCCGCCCAGGCCTTCGAATTCCTCGCCCCGCAA
CGCTTCGGCCAGGGCACCGCGGCGGCCTGGGGCATCCTGCGCGAGCGCGTGCCCGCGTACGACACCGACCGC
TGGCTGGCTCCTGACATCGCCAGCGCGGCGGCCATCCTCGGCGAGCGGAAGAGTCTCGCCCGGCTGGCCGCG
AGCATAGGAGACCTGCAATGA