ViewGene
Locus Name:
GeneID:
Location:

GeneID:797
TrivialName: PA14_10500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10500
PAO1 Ortholog Locus:PA4133
Sequence Length:1428
Protein Length:475
Start: 905044
Stop: 903617
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07520.1|AE004830_1 (AE004830) cytochrome c oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1]
Identities = 475/475 (100%), Positives = 475/475 (100%)
Sequence:
ATGAACAAAGCAACGACGGAACCTGCCTACAACTACAAGGTGGTTCGCCAGTTCGCCATCATGACCGTGGTA
TGGGGCGTGATCGGCATGGGGTTGGGCGTACTGATCGCCTCGCAACTGGTCTGGCCCCAGATGAACTTCGAC
CTGCCCTGGACCAGCTTCGGCCGCCTGCGGCCGCTGCATACCAACCTGGTGATCTTCGCCTTCGGCGGCTGC
GCGCTGTTCGCCACCAGCTACTACACGGTGCAGCGTACCTGCCAGGTGCGACTGTTCTCCGACACCCTGGCC
GCCTTCACCTTCTGGGGCTGGCAGGCGGTGGCGGTGATCCTGCTGGTCAGCCTGCCGCTGGGCAACACCACC
ACCAAGGAATACGCCGAGATCGAGTTCACCGGCGCGATCTGGCTGGCGATCGTCTGGGTCGCCTACGCGGTG
GTGTTCTTCGGCACCCTGATCAAGCGCAAGGTCAAGCACATCTATGTCGGCAACTGGTTCTTCGGCTCGTTC
ATCCTGACCACCGCGATGCTGCACATCGTCAACCACATGTCGCTGCCGGTGAGCTGGTTCAAGTCCTACTCG
ATGTACTCCGGCGCCACCGATGCCATGGTCCAGTGGTGGTACGGGCACAACGCCGTAGGCTTCTTCCTGACC
ACCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAAGCCGGGCGCCCGGTCTACTCCTACCGGCTG
TCCATCGTCCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCACCACCTGCACTACACCGCG
CTGCCGGACTGGGCGCAGTCGCTGGGCATGGTGATGTCGCTGATCCTCCTGGCGCCGAGCTGGGGCGGCATG
ATCAACGGCATGATGACCCTCTCCGGGGCCTGGCATAAGCTGCGCGACGACCCGATCCTGCGCTTCCTGGTG
GTGTCCCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCAACGCCCTC
TCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTCGCGATGATCACCATC
GGCTCGCTCTACCACCTGATTCCCAAGGTCTACGGGGTCGAGAAGATGCACAGCGTCGGCCTGATCAATGCG
CACTTCTGGCTGGCCACCATCGGCACCGTGCTGTACATCGCCTCGCTGTGGGTCAACGGCATTACCCAGGGC
CTGATGTGGCGCGCGGTCAACGAGGACGGCACGCTGACCTACTCCTTCGTCGAGTCGCTGGTGGCCAGCCAT
CCGGGCTTCATCGTGCGCCTGGTCGGTGGCGGGTTCTTCCTCACCGGCATGCTGCTGATGAGCTACAACACC
TGGCGCACGGTACGCCAGGCGCGCCCGGAAGGAATCCTCGCGGCGGCCCGCATGGCCTGA
Translation:
MNKATTEPAYNYKVVRQFAIMTVVWGVIGMGLGVLIASQLVWPQMNFDLPWTSFGRLRPLHTNLVIFAFGGC
ALFATSYYTVQRTCQVRLFSDTLAAFTFWGWQAVAVILLVSLPLGNTTTKEYAEIEFTGAIWLAIVWVAYAV
VFFGTLIKRKVKHIYVGNWFFGSFILTTAMLHIVNHMSLPVSWFKSYSMYSGATDAMVQWWYGHNAVGFFLT
TGFLGMMYYFVPKQAGRPVYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGM
INGMMTLSGAWHKLRDDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMITI
GSLYHLIPKVYGVEKMHSVGLINAHFWLATIGTVLYIASLWVNGITQGLMWRAVNEDGTLTYSFVESLVASH
PGFIVRLVGGGFFLTGMLLMSYNTWRTVRQARPEGILAAARMA*
AnnotationID:806GeneID:797
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:27
Gene Name:
Confidence Code:2
GeneProduct:cytochrome c oxidase subunit (cbb3-type)
Cell Localization:()
Synonyms:PA4133, ccoN, cytN, fixN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome c oxidase, cbb3-type, subunit I
Functional Category Confidence Code:5
COGs:COG3278
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:1.9.3.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69830.1|AE016622_7 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           putida KT2440]
          Length = 474

 Score =  822 bits (2124), Expect = 0.0
 Identities = 386/471 (81%), Positives = 425/471 (90%)

>gb|AAO55522.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 480

 Score =  822 bits (2123), Expect = 0.0
 Identities = 384/475 (80%), Positives = 427/475 (89%)

>gb|AAN55398.1|AE015677_9 (AE015677) cytochrome c oxidase, cbb3-type, subunit I [Shewanella
           oneidensis MR-1]
          Length = 478

 Score =  757 bits (1954), Expect = 0.0
 Identities = 346/455 (76%), Positives = 400/455 (87%)






 
Structural Features:
COG3278, CcoN, Cbb3-type cytochrome oxidase, subunit 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 482 residues,  97.9% aligned
Score =  707 bits (1825), Expect = 0.0
Identities = 353/472 (74%), Positives = 406/472 (86%), Gaps = 5/472 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1597




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18739




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36869




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:797_cdd.html


    		




 
URL:

















    ReferenceID:36971




  
Author/Investigator(s):
        Thony-Meyer L, Beck C, Preisig O, Hennecke H.





  
Title:
        The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus.




  
PubMed:
        7891558


MedLine:
        




    
Source:
Mol Microbiol. 1994 Nov;14(4):705-16.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7891558









           
Homologs By Global Alignment 

           

       



     
Gene ID:797
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1418
                           PA4133_tr
                           translation of PA4133
                           475
                           99.99
                           99.99
                           0
                           2545.0
     

     
     
52296
                           gb|AAG07520.1|AE004830_1
                           (AE004830) cytochrome c oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1]
                           475
                           99.99
                           99.99
                           0
                           2545.0
     

     
     
52297
                           gb|AAG04943.1|AE004583_8
                           (AE004583) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1]
                           475
                           87.36
                           94.10
                           0
                           2266.0
     

     
     
1419
                           PA1554_tr
                           translation of PA1554
                           475
                           87.36
                           94.10
                           0
                           2266.0
     

     
     
1420
                           PA1557_tr
                           translation of PA1557
                           475
                           83.36
                           91.36
                           0
                           2177.0
     

     






      

          
GC ORFID: 43799How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4133Glimmer Score: 

          
Start: 4048893Stop: 4050320

          
Length: 1428


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4133 translation of PA4133Homolog Bit Score 984.0

          
Other Homologs:  t_PA1554 (ORF: BLASTX 877.0), t_PA1557 (ORF: BLASTX 843.0), t_PA1856 (ORF: BLASTX 806.0), psyr_15may02_Scaffold8_revised_gene7525 (ORF: BLASTX 804.0), t_PA4133 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAAGCAACGACGGAACCTGCCTACAACTACAAGGTGGTTCGCCAGTTCGCCATCATGACCGTGGTA 
TGGGGCGTGATCGGCATGGGGTTGGGCGTACTGATCGCCTCGCAACTGGTCTGGCCCCAGATGAACTTCGAC 
CTGCCCTGGACCAGCTTCGGCCGCCTGCGGCCGCTGCATACCAACCTGGTGATCTTCGCCTTCGGCGGCTGC 
GCGCTGTTCGCCACCAGCTACTACACGGTGCAGCGTACCTGCCAGGTGCGACTGTTCTCCGACACCCTGGCC 
GCCTTCACCTTCTGGGGCTGGCAGGCGGTGGCGGTGATCCTGCTGGTCAGCCTGCCGCTGGGCAACACCACC 
ACCAAGGAATACGCCGAGATCGAGTTCACCGGCGCGATCTGGCTGGCGATCGTCTGGGTCGCCTACGCGGTG 
GTGTTCTTCGGCACCCTGATCAAGCGCAAGGTCAAGCACATCTATGTCGGCAACTGGTTCTTCGGCTCGTTC 
ATCCTGACCACCGCGATGCTGCACATCGTCAACCACATGTCGCTGCCGGTGAGCTGGTTCAAGTCCTACTCG 
ATGTACTCCGGCGCCACCGATGCCATGGTCCAGTGGTGGTACGGGCACAACGCCGTAGGCTTCTTCCTGACC 
ACCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAAGCCGGGCGCCCGGTCTACTCCTACCGGCTG 
TCCATCGTCCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCACCACCTGCACTACACCGCG 
CTGCCGGACTGGGCGCAGTCGCTGGGCATGGTGATGTCGCTGATCCTCCTGGCGCCGAGCTGGGGCGGCATG 
ATCAACGGCATGATGACCCTCTCCGGGGCCTGGCATAAGCTGCGCGACGACCCGATCCTGCGCTTCCTGGTG 
GTGTCCCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCAACGCCCTC 
TCCCACTACACCGACTGGACCATCGGCCACGTCCACGCCGGCGCCCTCGGCTGGGTCGCGATGATCACCATC 
GGCTCGCTCTACCACCTGATTCCCAAGGTCTACGGGGTCGAGAAGATGCACAGCGTCGGCCTGATCAATGCG 
CACTTCTGGCTGGCCACCATCGGCACCGTGCTGTACATCGCCTCGCTGTGGGTCAACGGCATTACCCAGGGC 
CTGATGTGGCGCGCGGTCAACGAGGACGGCACGCTGACCTACTCCTTCGTCGAGTCGCTGGTGGCCAGCCAT 
CCGGGCTTCATCGTGCGCCTGGTCGGTGGCGGGTTCTTCCTCACCGGCATGCTGCTGATGAGCTACAACACC 
TGGCGCACGGTACGCCAGGCGCGCCCGGAAGGAATCCTCGCGGCGGCCCGCATGGCCTGA