ViewGene

Locus Name:
GeneID:
Location:

GeneID:796
TrivialName: PA14_40510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40510
PAO1 Ortholog Locus:PA1856
Sequence Length:1443
Protein Length:480
Start: 3618097
Stop: 3619539
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05245.1|AE004611_10 (AE004611) probable cytochrome oxidase subunit [Pseudomonas aeruginosa PAO1]
Identities = 475/480 (98%), Positives = 478/480 (99%)
Sequence:
ATGAACGATACGGATAGCAGAAAAGATCCGGACGGCTACAACTACGACGTCGTCCGCCAGTTCACCCTGATG
ACCCTGGTCTGGGGCATCCTCGGCATGGGCCTGGGGGTGTTCATCGCCGCCCAGCTGGTCTGGCCGGCGCTC
AACCTCGACCTGCCCTGGACCAGCTTCGGCCGCATCCGCCCGATCCACACCAGCCTGGTGATCTTCGCCTTC
GGCGGCAGCGCGTTGTTCGCCACCTCCTTCTACGTGGTGCAGCGCACCAGCGGCGTGCGGCTGATCTCCGAC
GTCCTGGCGCGCTTCGTGTTCTGGGGCTGGCAGGCGGCGATCGTGGGGATGATCGTCAGCTACCCGCTGGGC
TACACCACCTCCAAGGAGTACGCCGAGATGGAATGGCCACTGGCGCTGTGGATGGCCATCGTCTGGGTGGTC
TATGCCTACCTGTTCTTCGGCACCATCGCCCGCCGCAAGGTGAAGCACATCTACGTCGGCAACTGGTTCTAC
GGCGCCTTCATCATCGTCACCGCGATGGTCCATATCGTGAACCACGCATTGCTGCCGGTGAGCCTGGGCAAG
TCCTACTCGGCCTATTCCGGCGCCACCGACGCGATGATCCAGTGGTGGTACGGGCACAGCGTGGTCGGCTTC
ATCCTCTCGGTCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGGGCGACCGATCTACTCC
TATCGCCTGTCCATCGTGCATTTCTGGGCGATCATCTCGATCTACATCTGGGCCGGTCCGCACCACCTGCAC
TACACCGCGCTGCCGGACTGGGCGCAGTCGCTCGGCATGGTGATGTCGCTGATCCTCCTGGCACCGAGCTGG
GGCGGCATGATCAACGGCATGATGACCCTCTCCGGGGCCTGGCATAAGTTGCGCGACGACCCGATCCTGCGC
TTCCTGGTGGTGTCCCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACGGTC
AACTCGCTGTCCCACTACACCGACTGGACCATCGGCCATGTCCACGCCGGCGCCCTCGGCTGGGTGGCGATG
ATCTCCATCGGCACGCTCTACCACATGATCCCGAAGCTCTGGGGCCGCGAGCGGATGCACAGCGTCGGCCTG
ATCAACGCGCACTTCTGGCTGGCCACCATCGGCACCGTGCTGTACATCGCCTCGATGTGGGTCAATGGCATC
ACCCAGGGCCTGATGTGGCGGGCGATCAACGAGGACGGCACGCTCACCTACTCGTTCGTCGAGGCGCTGGTG
GCCAGCCATCCGGGCTACGTGGTGCGCCTGCTCGGCGGCGCCACCTTCGCCAGCGGCATGCTGCTGATGGCC
TACAACACCTGGCGGACCCTGCGCAGCGCGCAGGAGCAGCGGCAGCCGGTCCTGGCGGCCGGCCAGGGGGCC
TGA
Translation:
MNDTDSRKDPDGYNYDVVRQFTLMTLVWGILGMGLGVFIAAQLVWPALNLDLPWTSFGRIRPIHTSLVIFAF
GGSALFATSFYVVQRTSGVRLISDVLARFVFWGWQAAIVGMIVSYPLGYTTSKEYAEMEWPLALWMAIVWVV
YAYLFFGTIARRKVKHIYVGNWFYGAFIIVTAMVHIVNHALLPVSLGKSYSAYSGATDAMIQWWYGHSVVGF
ILSVGFLGMMYYFVPKQAGRPIYSYRLSIVHFWAIISIYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSW
GGMINGMMTLSGAWHKLRDDPILRFLVVSLAFYGMSTFEGPMMAIKTVNSLSHYTDWTIGHVHAGALGWVAM
ISIGTLYHMIPKLWGRERMHSVGLINAHFWLATIGTVLYIASMWVNGITQGLMWRAINEDGTLTYSFVEALV
ASHPGYVVRLLGGATFASGMLLMAYNTWRTLRSAQEQRQPVLAAGQGA*
AnnotationID:805GeneID:796
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 19:07:37
Gene Name:ccoN-2
Confidence Code:2
GeneProduct:putative cytochrome c oxidase, cbb3-type, subunit
Cell Localization:()
Synonyms:ccoN,cytN,fixN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3278,pfam00115
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:1.9.3.1
Status:ACTIVE
Pathway:
Respiratory chain; terminal step
Homology:
>gb|AAN69835.1|AE016622_12 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           putida KT2440]
          Length = 480

 Score =  830 bits (2145), Expect = 0.0
 Identities = 387/457 (84%), Positives = 422/457 (92%)

>gb|AAO55522.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 480

 Score =  797 bits (2059), Expect = 0.0
 Identities = 363/460 (78%), Positives = 413/460 (89%)

>dbj|BAC59807.1| (AP005078) cytochrome c oxidase, subunit CcoN [Vibrio
           parahaemolyticus]
          Length = 477

 Score =  738 bits (1904), Expect = 0.0
 Identities = 331/461 (71%), Positives = 396/461 (85%)
Structural Features:
COG3278, CcoN, Cbb3-type cytochrome oxidase, subunit 1 
[Posttranslational modification, protein turnover, chaperones] 
CD-Length = 482 residues,  98.3% aligned
Score =  705 bits (1820), Expect = 0.0
Identities = 339/474 (71%), Positives = 392/474 (82%), Gaps = 3/474 (0%)

pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
CD-Length = 458 residues,  89.7% aligned
Score =  242 bits (618), Expect = 9e-65
Identities = 88/437 (20%), Positives = 156/437 (35%), Gaps = 35/437 (8%)
Genomic Context:
Comment:
ReferenceID:1595
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18737
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37061
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:796_cdd.html
URL:
ReferenceID:37786
Author/Investigator(s): Thony-Meyer L, Beck C, Preisig O, Hennecke H.
Title: The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus.
PubMed: 7891558
MedLine:
Source:
Mol Microbiol. 1994 Nov;14(4):705-16.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7891558
ReferenceID:37787
Author/Investigator(s): Vollack KU, Xie J, Hartig E, Romling U, Zumft WG.
Title: Localization of denitrification genes on the chromosomal map of Pseudomonas aeruginosa.
PubMed: 9493381
MedLine:
Source:
Microbiology. 1998 Feb;144 ( Pt 2):441-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9493381
ReferenceID:37789
Author/Investigator(s): de Gier JW, Schepper M, Reijnders WN, van Dyck SJ, Slotboom DJ, Warne A, Saraste M, Krab K, Finel M, Stouthamer AH, van Spanning RJ, van der Oost J.
Title: Structural and functional analysis of aa3-type and cbb3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design.
PubMed: 8809776
MedLine:
Source:
Mol Microbiol. 1996 Jun;20(6):1247-60.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=96405647&dopt=Abstract
ReferenceID:37790
Author/Investigator(s): Schluter A, Ruberg S, Kramer M, Weidner S, Priefer UB.
Title: A homolog of the Rhizobium meliloti nitrogen fixation gene fixN is involved in the production of a microaerobically induced oxidase activity in the phytopathogenic bacterium Agrobacterium tumefaciens.
PubMed: 7753030
MedLine:
Source:
Mol Gen Genet. 1995 Apr 20;247(2):206-15.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95272530&dopt=Abstract
Homologs By Global Alignment
Gene ID:796

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1414 PA1856_tr translation of PA1856 480 98.95 99.58 0 2545.0
52239 gb|AAG05245.1|AE004611_10 (AE004611) probable cytochrome oxidase subunit [Pseudomonas aeruginosa PAO1] 480 98.95 99.58 0 2545.0
1415 PA1554_tr translation of PA1554 480 80.41 89.58 5 2123.0
52241 gb|AAG04943.1|AE004583_8 (AE004583) probable cytochrome oxidase subunit (cbb3-type) [Pseudomonas aeruginosa PAO1] 480 80.41 89.58 5 2123.0
52240 gb|AAN69835.1|AE016622_12 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas putida KT2440] 484 80.37 88.42 8 2140.0
GC ORFID: 43798How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1856Glimmer Score:
Start: 1335813Stop: 1334371
Length: 1443
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1856 translation of PA1856Homolog Bit Score 984.0
Other Homologs: t_PA1554 (ORF: BLASTX 825.0), t_PA4133 (ORF: BLASTX 807.0), psyr_15may02_Scaffold8_revised_gene7525 (ORF: BLASTX 786.0), t_PA1557 (ORF: BLASTX 782.0), t_PA1856 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGATACGGATAGCAGAAAAGATCCGGACGGCTACAACTACGACGTCGTCCGCCAGTTCACCCTGATG
ACCCTGGTCTGGGGCATCCTCGGCATGGGCCTGGGGGTGTTCATCGCCGCCCAGCTGGTCTGGCCGGCGCTC
AACCTCGACCTGCCCTGGACCAGCTTCGGCCGCATCCGCCCGATCCACACCAGCCTGGTGATCTTCGCCTTC
GGCGGCAGCGCGTTGTTCGCCACCTCCTTCTACGTGGTGCAGCGCACCAGCGGCGTGCGGCTGATCTCCGAC
GTCCTGGCGCGCTTCGTGTTCTGGGGCTGGCAGGCGGCGATCGTGGGGATGATCGTCAGCTACCCGCTGGGC
TACACCACCTCCAAGGAGTACGCCGAGATGGAATGGCCACTGGCGCTGTGGATGGCCATCGTCTGGGTGGTC
TATGCCTACCTGTTCTTCGGCACCATCGCCCGCCGCAAGGTGAAGCACATCTACGTCGGCAACTGGTTCTAC
GGCGCCTTCATCATCGTCACCGCGATGGTCCATATCGTGAACCACGCATTGCTGCCGGTGAGCCTGGGCAAG
TCCTACTCGGCCTATTCCGGCGCCACCGACGCGATGATCCAGTGGTGGTACGGGCACAGCGTGGTCGGCTTC
ATCCTCTCGGTCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGGGCGACCGATCTACTCC
TATCGCCTGTCCATCGTGCATTTCTGGGCGATCATCTCGATCTACATCTGGGCCGGTCCGCACCACCTGCAC
TACACCGCGCTGCCGGACTGGGCGCAGTCGCTCGGCATGGTGATGTCGCTGATCCTCCTGGCACCGAGCTGG
GGCGGCATGATCAACGGCATGATGACCCTCTCCGGGGCCTGGCATAAGTTGCGCGACGACCCGATCCTGCGC
TTCCTGGTGGTGTCCCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACGGTC
AACTCGCTGTCCCACTACACCGACTGGACCATCGGCCATGTCCACGCCGGCGCCCTCGGCTGGGTGGCGATG
ATCTCCATCGGCACGCTCTACCACATGATCCCGAAGCTCTGGGGCCGCGAGCGGATGCACAGCGTCGGCCTG
ATCAACGCGCACTTCTGGCTGGCCACCATCGGCACCGTGCTGTACATCGCCTCGATGTGGGTCAATGGCATC
ACCCAGGGCCTGATGTGGCGGGCGATCAACGAGGACGGCACGCTCACCTACTCGTTCGTCGAGGCGCTGGTG
GCCAGCCATCCGGGCTACGTGGTGCGCCTGCTCGGCGGCGCCACCTTCGCCAGCGGCATGCTGCTGATGGCC
TACAACACCTGGCGGACCCTGCGCAGCGCGCAGGAGCAGCGGCAGCCGGTCCTGGCGGCCGGCCAGGGGGCC
TGA