Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG05245.1| AE004611_10 (AE004611) probable cytochrome oxidase subunit [Pseudomonas aeruginosa PAO1]
Identities = 475/480 (98%), Positives = 478/480 (99%)
Sequence:
ATGAACGATACGGATAGCAGAAAAGATCCGGACGGCTACAACTACGACGTCGTCCGCCAGTTCACCCTGATG
ACCCTGGTCTGGGGCATCCTCGGCATGGGCCTGGGGGTGTTCATCGCCGCCCAGCTGGTCTGGCCGGCGCTC
AACCTCGACCTGCCCTGGACCAGCTTCGGCCGCATCCGCCCGATCCACACCAGCCTGGTGATCTTCGCCTTC
GGCGGCAGCGCGTTGTTCGCCACCTCCTTCTACGTGGTGCAGCGCACCAGCGGCGTGCGGCTGATCTCCGAC
GTCCTGGCGCGCTTCGTGTTCTGGGGCTGGCAGGCGGCGATCGTGGGGATGATCGTCAGCTACCCGCTGGGC
TACACCACCTCCAAGGAGTACGCCGAGATGGAATGGCCACTGGCGCTGTGGATGGCCATCGTCTGGGTGGTC
TATGCCTACCTGTTCTTCGGCACCATCGCCCGCCGCAAGGTGAAGCACATCTACGTCGGCAACTGGTTCTAC
GGCGCCTTCATCATCGTCACCGCGATGGTCCATATCGTGAACCACGCATTGCTGCCGGTGAGCCTGGGCAAG
TCCTACTCGGCCTATTCCGGCGCCACCGACGCGATGATCCAGTGGTGGTACGGGCACAGCGTGGTCGGCTTC
ATCCTCTCGGTCGGCTTCCTCGGCATGATGTACTACTTCGTGCCCAAGCAGGCCGGGCGACCGATCTACTCC
TATCGCCTGTCCATCGTGCATTTCTGGGCGATCATCTCGATCTACATCTGGGCCGGTCCGCACCACCTGCAC
TACACCGCGCTGCCGGACTGGGCGCAGTCGCTCGGCATGGTGATGTCGCTGATCCTCCTGGCACCGAGCTGG
GGCGGCATGATCAACGGCATGATGACCCTCTCCGGGGCCTGGCATAAGTTGCGCGACGACCCGATCCTGCGC
TTCCTGGTGGTGTCCCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCGATCAAGACGGTC
AACTCGCTGTCCCACTACACCGACTGGACCATCGGCCATGTCCACGCCGGCGCCCTCGGCTGGGTGGCGATG
ATCTCCATCGGCACGCTCTACCACATGATCCCGAAGCTCTGGGGCCGCGAGCGGATGCACAGCGTCGGCCTG
ATCAACGCGCACTTCTGGCTGGCCACCATCGGCACCGTGCTGTACATCGCCTCGATGTGGGTCAATGGCATC
ACCCAGGGCCTGATGTGGCGGGCGATCAACGAGGACGGCACGCTCACCTACTCGTTCGTCGAGGCGCTGGTG
GCCAGCCATCCGGGCTACGTGGTGCGCCTGCTCGGCGGCGCCACCTTCGCCAGCGGCATGCTGCTGATGGCC
TACAACACCTGGCGGACCCTGCGCAGCGCGCAGGAGCAGCGGCAGCCGGTCCTGGCGGCCGGCCAGGGGGCC
TGA
Translation:
MNDTDSRKDPDGYNYDVVRQFTLMTLVWGILGMGLGVFIAAQLVWPALNLDLPWTSFGRIRPIHTSLVIFAF
GGSALFATSFYVVQRTSGVRLISDVLARFVFWGWQAAIVGMIVSYPLGYTTSKEYAEMEWPLALWMAIVWVV
YAYLFFGTIARRKVKHIYVGNWFYGAFIIVTAMVHIVNHALLPVSLGKSYSAYSGATDAMIQWWYGHSVVGF
ILSVGFLGMMYYFVPKQAGRPIYSYRLSIVHFWAIISIYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSW
GGMINGMMTLSGAWHKLRDDPILRFLVVSLAFYGMSTFEGPMMAIKTVNSLSHYTDWTIGHVHAGALGWVAM
ISIGTLYHMIPKLWGRERMHSVGLINAHFWLATIGTVLYIASMWVNGITQGLMWRAINEDGTLTYSFVEALV
ASHPGYVVRLLGGATFASGMLLMAYNTWRTLRSAQEQRQPVLAAGQGA*
AnnotationID:805 GeneID:796
Modification Date/Time:
2005-06-03 19:07:37
GeneProduct: putative cytochrome c oxidase, cbb3-type, subunit
Cell Localization Confidence Code: 5
Functional Category: (12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies): posttranslational modification, protein turnover, chaperones
Pathway: Respiratory chain; terminal step
Homology: >gb|AAN69835.1| AE016622_12 (AE016790) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
putida KT2440]
Length = 480
Score = 830 bits (2145), Expect = 0.0
Identities = 387/457 (84%), Positives = 422/457 (92%)
>gb|AAO55522.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit I [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 480
Score = 797 bits (2059), Expect = 0.0
Identities = 363/460 (78%), Positives = 413/460 (89%)
>dbj|BAC59807.1| (AP005078) cytochrome c oxidase, subunit CcoN [Vibrio
parahaemolyticus]
Length = 477
Score = 738 bits (1904), Expect = 0.0
Identities = 331/461 (71%), Positives = 396/461 (85%)
Structural Features: COG3278 , CcoN, Cbb3-type cytochrome oxidase, subunit 1
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 482 residues, 98.3% aligned
Score = 705 bits (1820), Expect = 0.0
Identities = 339/474 (71%), Positives = 392/474 (82%), Gaps = 3/474 (0%)
pfam00115 , COX1, Cytochrome C and Quinol oxidase polypeptide I.
CD-Length = 458 residues, 89.7% aligned
Score = 242 bits (618), Expect = 9e-65
Identities = 88/437 (20%), Positives = 156/437 (35%), Gaps = 35/437 (8%)
ReferenceID:37789
Author/Investigator(s):
de Gier JW, Schepper M, Reijnders WN, van Dyck SJ, Slotboom DJ, Warne A, Saraste M, Krab K, Finel M, Stouthamer AH, van Spanning RJ, van der Oost J.
Title:
Structural and functional analysis of aa3-type and cbb3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design.
Source: Mol Microbiol. 1996 Jun;20(6):1247-60.