ViewGene

Locus Name:
GeneID:
Location:

GeneID:795
TrivialName: PA14_65570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65570
PAO1 Ortholog Locus:PA4961
Sequence Length:1539
Protein Length:512
Start: 5840480
Stop: 5842018
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08346.1|AE004909_2 (AE004909) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 510/512 (99%), Positives = 512/512 (100%)
Sequence:
GTGACCCGGCCCACGTCCGTCAAGCCCGACAATTTCTTCCTCCTGCTGTTTCGTGCCTTGCGCCAGCGCCGC
GTCCCGATCGCCCTGCGGCTCGCCAGCCATAGCCTGATCCTGGTGGCCCTGGCCCTGCTGATCTACGCCTGG
GTCATGGGCATGCAGTTTCGCCAGGCCATGCAGCAGCAGGCCGATGCCCTGGGCCAGAGCCTGATCACCCAG
ACCGCCGCGTCCGCCACCGAGTTGCTGGTGTCCAACGACATCCTTAGCCTCAACGTGCTGCTGAACAACCTG
GTGAAGAACCCGCTGGTGGCCCATGCGGCGATCTACAGCATCGACCAGCGCATCCTCGCCGAGGCCGGCAGC
CGTCCGAAGCAGAGCCTGCTCGGCGCCACCGAAGGCCTGTACTCGACGCCGATCACCTTCCAGGAAGTGATC
GCCGGGCACCTGCGCATCAGCCTGGACATGCAGCAGTTCCAGCAGCCGATGATGATCAGCCTGCAGAGCATG
GGCCTGATCAGCCTGATCCTGCTGATCCTCGCCCTGTATTTCAGTCTGCGCCTGGGGCGGCAGATTTCCACA
CCCTTGTTGCAATTGCGTGTCTGGTTGCGCGATCCGGACAATCCGGCCCCCGGCGCCGAACTGCAGAACGAG
CTGGGCGACCTGGCGCGCGACCTGGAAGAGCGCCTGGTGCCGGAGAAGCCGCCGGCGCCGGAGCCGGAAGAA
GCACCGCTGCCGCAGAACTTCGACGACATCCTGCTGGAAGACGACGAAGCCGACCTGCGCAGCCGCAAGGTC
GAGGCCTCGGCCTTCGAGGAAGACGACATTCCGCTGGGCGACGCCCTGCTGGACGAGACCAAGCCGGTGGAA
TTCACCTCCATCGACGAAGACCCGCTGGACCAGGACGCCTTCGACGAGAACGGAGCCGAAGCCGGGGACCAG
CCCGCGGCGCCCGCCGCTGCGCGCGAACCGCAACACAGTGCGGTGCTGGCGATCCAGCTCGGCGCCCAGGAA
CAGTTGCGCCGGTTGCCGCGCAGCCGCCTGGTGGACCTCCTGCAACGCTATCGCGACTGCCTGGAACAGGCC
GCCCGCCAGTACAAGGGCAGCCTGCACACGCTCAGCGACGGCGGCAGCCTGATTCTCTTCCACAGCCGCGAC
AACCGCGCCGACTACCTGACCAACGCGCTCTGCTGCGGTGAACTGATGCGCGCGCTCGGCCATGCCCTGCAG
ATCGAGGTCGCCGACAGCGGCATCACCTTGCAGTTGCAACTGGGCCTGAGCCTCGGCGAAGACCTCAGCGAA
CAGACCCAGGCCGACCTGCTGCTCAACGAAACCGTGCAGAACGCCCTCGCCCTCAACCAGCACAGCCGCAAC
CTGCTGCTGGTCGAACGCAGCATCGCCGACGACGCGGTGGTCCGCGAGCGCGCCCGTATCCGCGCCATCGCC
AGTCCGGAAGGAGCCTGCTGCGTCGAGCGTCTGCTGGAGCCGTATCCGTCGATGCTCGAGCGCCAACTGGCG
CGCATGCACGACCGCGCCCGCCCGTGA
Translation:
MTRPTSVKPDNFFLLLFRALRQRRVPIALRLASHSLILVALALLIYAWVMGMQFRQAMQQQADALGQSLITQ
TAASATELLVSNDILSLNVLLNNLVKNPLVAHAAIYSIDQRILAEAGSRPKQSLLGATEGLYSTPITFQEVI
AGHLRISLDMQQFQQPMMISLQSMGLISLILLILALYFSLRLGRQISTPLLQLRVWLRDPDNPAPGAELQNE
LGDLARDLEERLVPEKPPAPEPEEAPLPQNFDDILLEDDEADLRSRKVEASAFEEDDIPLGDALLDETKPVE
FTSIDEDPLDQDAFDENGAEAGDQPAAPAAAREPQHSAVLAIQLGAQEQLRRLPRSRLVDLLQRYRDCLEQA
ARQYKGSLHTLSDGGSLILFHSRDNRADYLTNALCCGELMRALGHALQIEVADSGITLQLQLGLSLGEDLSE
QTQADLLLNETVQNALALNQHSRNLLLVERSIADDAVVRERARIRAIASPEGACCVERLLEPYPSMLERQLA
RMHDRARP*
AnnotationID:804GeneID:795
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4961
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58386.1| (AE016874) HAMP domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 513

 Score =  632 bits (1630), Expect = e-180
 Identities = 344/522 (65%), Positives = 399/522 (76%), Gaps = 27/522 (5%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:14221
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18735
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35022
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:795_cdd.html
URL:
Homologs By Global Alignment
Gene ID:795

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1413 PA4961_tr translation of PA4961 512 99.60 99.99 0 2547.0
52236 gb|AAG08346.1|AE004909_2 (AE004909) hypothetical protein PA4961 [Pseudomonas aeruginosa PAO1] 512 99.41 99.99 0 2544.0
52237 gb|AAO58386.1| (AE016874) HAMP domain protein [Pseudomonas syringae pv. tomato str. DC3000] 526 65.20 76.04 27 1645.0
52238 gb|AAN70477.1|AE016689_5 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 513 64.71 74.46 29 1611.0
GC ORFID: 43797How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4961Glimmer Score:
Start: 5104161Stop: 5105699
Length: 1539
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4961 translation of PA4961Homolog Bit Score 985.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3670 (ORF: BLASTX 625.0), t_PA4961 (ORF: GLIMMER)
GC ORF Sequence
GTGACCCGGCCCACGTCCGTCAAGCCCGACAATTTCTTCCTCCTGCTGTTTCGTGCCTTGCGCCAGCGCCGC
GTCCCGATCGCCCTGCGGCTCGCCAGCCATAGCCTGATCCTGGTGGCCCTGGCCCTGCTGATCTACGCCTGG
GTCATGGGCATGCAGTTTCGCCAGGCCATGCAGCAGCAGGCCGATGCCCTGGGCCAGAGCCTGATCACCCAG
ACCGCCGCGTCCGCCACCGAGTTGCTGGTGTCCAACGACATCCTTAGCCTCAACGTGCTGCTGAACAACCTG
GTGAAGAACCCGCTGGTGGCCCATGCGGCGATCTACAGCATCGACCAGCGCATCCTCGCCGAGGCCGGCAGC
CGTCCGAAGCAGAGCCTGCTCGGCGCCACCGAAGGCCTGTACTCGACGCCGATCACCTTCCAGGAAGTGATC
GCCGGGCACCTGCGCATCAGCCTGGACATGCAGCAGTTCCAGCAGCCGATGATGATCAGCCTGCAGAGCATG
GGCCTGATCAGCCTGATCCTGCTGATCCTCGCCCTGTATTTCAGTCTGCGCCTGGGGCGGCAGATTTCCACA
CCCTTGTTGCAATTGCGTGTCTGGTTGCGCGATCCGGACAATCCGGCCCCCGGCGCCGAACTGCAGAACGAG
CTGGGCGACCTGGCGCGCGACCTGGAAGAGCGCCTGGTGCCGGAGAAGCCGCCGGCGCCGGAGCCGGAAGAA
GCACCGCTGCCGCAGAACTTCGACGACATCCTGCTGGAAGACGACGAAGCCGACCTGCGCAGCCGCAAGGTC
GAGGCCTCGGCCTTCGAGGAAGACGACATTCCGCTGGGCGACGCCCTGCTGGACGAGACCAAGCCGGTGGAA
TTCACCTCCATCGACGAAGACCCGCTGGACCAGGACGCCTTCGACGAGAACGGAGCCGAAGCCGGGGACCAG
CCCGCGGCGCCCGCCGCTGCGCGCGAACCGCAACACAGTGCGGTGCTGGCGATCCAGCTCGGCGCCCAGGAA
CAGTTGCGCCGGTTGCCGCGCAGCCGCCTGGTGGACCTCCTGCAACGCTATCGCGACTGCCTGGAACAGGCC
GCCCGCCAGTACAAGGGCAGCCTGCACACGCTCAGCGACGGCGGCAGCCTGATTCTCTTCCACAGCCGCGAC
AACCGCGCCGACTACCTGACCAACGCGCTCTGCTGCGGTGAACTGATGCGCGCGCTCGGCCATGCCCTGCAG
ATCGAGGTCGCCGACAGCGGCATCACCTTGCAGTTGCAACTGGGCCTGAGCCTCGGCGAAGACCTCAGCGAA
CAGACCCAGGCCGACCTGCTGCTCAACGAAACCGTGCAGAACGCCCTCGCCCTCAACCAGCACAGCCGCAAC
CTGCTGCTGGTCGAACGCAGCATCGCCGACGACGCGGTGGTCCGCGAGCGCGCCCGTATCCGCGCCATCGCC
AGTCCGGAAGGAGCCTGCTGCGTCGAGCGTCTGCTGGAGCCGTATCCGTCGATGCTCGAGCGCCAACTGGCG
CGCATGCACGACCGCGCCCGCCCGTGA