ViewGene
Locus Name:
GeneID:
Location:

GeneID:794
TrivialName: PA14_09710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09710
PAO1 Ortholog Locus:PA4189
Sequence Length:1491
Protein Length:496
Start: 836696
Stop: 835206
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07576.1|AE004835_5 (AE004835) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 496/496 (100%), Positives = 496/496 (100%)
Sequence:
ATGACTGAGCTGCTGAGCCGGGAGGAATACGCGGCCATCGCCGCGACGCTGGACCTTCCCCAGCGCGCCTTC
ATCGACGGAGGGTTCCGCGATGCCTGCGGCGGCCGCACCTTCGCCTCGACCAACCCGGCCACCGGCGAGCTG
CTGGCGCAGGTCGCCGCCTGCGACGCGGAGGACGTCGGGCACGCCGTGGCCAGCGCGCGGCGGGCGTTCGAG
GACGGCCGCTGGCGCTCGCGCACGCCCGCCGAGCGCAAGGCGGCGCTGCTGCGCCTGGCCGAGCTGCTGGAA
GAGCACCTGCTGGAACTGGCGGTGATGGAGAGCCTCGACAGCGGCAAGCCGATCCGCGAATGCCAGCACACC
GACCTGCCGGAAACCATCAATACCCTGCGCTGGCATGCCGAACTGATCGACAAGATCTACGACAGCACCGCC
CCGGTCGGTTCGGCGGCGCTGGCCATGGTGGTGCGCGAGCCGATCGGCGTGGTCGGCCTGGTGCTGCCGTGG
AACTTCCCGCTGCTGATGCTCGCCTGGAAGATCGGCCCGGCGCTGGCGGCAGGCTGCTCCGTAGTGGTCAAG
CCGGCCCCCGAGACCAGCCTGACCGCCCTGCGCGTCGCCGAACTGGCCAGCCAGGCGGGGATCCCCGCCGGG
GTGTTCAACGTGGTCCCCGGCGGCGGCCGCGAGGCCGGCGAACCGCTGGGCCGCCACCCGGACGTGGCGATG
GTCAGCTTCACCGGCTCCACCGCGACCGGCCGCCTGTTCCTCAAGTACGCCGCCGAGTCCAACCTCAAGCGG
GTGGTACTGGAGTGCGGCGGCAAGAACCCGGCGGTGGTGATGAACGATGTCGAGGACCTCGACCTGGTGGCG
CAACACGTGGTCAACGGCGCGTTCTGGAACATGGGCGAGAACTGCTCGGCGTCCTCGCGACTGATCGTCCAC
GCCGAGGTCCGCGAGGCACTGCTCGAACGCATCGGCGCGCAGCTCCGCGAGTGGCGCATGGGCGACCCGCTG
GATCCGCGTAATCGCCTCGGCGCGCTGGTCAGCCCGGCGCACTTCGAGAAGGTCCGCGCGTACCTCGACCAG
GCCAGGACGGAGCGGTTGGCGGTGCGCTTCGGCGGCGCCACCGAGGCTGGCATCTTCGTCGAGCCGACCGTG
GTCGATGGCGTCTCGCCGCACAGCCGGCTGTTCCGCGAGGAAATCTTCGGCCCGCTGCTCTCGGTCACCTCT
TTCGACGACATCGACGAAGCCATCGCCCTGGCCAACGACACCGTCTACGGCCTCGCCGCCTCGGCCTACACC
GGCAGCCTGCGCCACGCACTGCGCCTGTCGCGGGAGATCCGCGCGGGGATCGTCACCGTCAACTGCTTCGGC
GAGGGCGACGCCTCGACGCCCTTCGGCGGCTACAAGGAGTCAGGCTTCGGCGGTCGCGACAAGTCGGTCTGG
GCACACGACCAGTACACAGAGCTGAAGACCATCTGGATCGACGCTTCCTGA
Translation:
MTELLSREEYAAIAATLDLPQRAFIDGGFRDACGGRTFASTNPATGELLAQVAACDAEDVGHAVASARRAFE
DGRWRSRTPAERKAALLRLAELLEEHLLELAVMESLDSGKPIRECQHTDLPETINTLRWHAELIDKIYDSTA
PVGSAALAMVVREPIGVVGLVLPWNFPLLMLAWKIGPALAAGCSVVVKPAPETSLTALRVAELASQAGIPAG
VFNVVPGGGREAGEPLGRHPDVAMVSFTGSTATGRLFLKYAAESNLKRVVLECGGKNPAVVMNDVEDLDLVA
QHVVNGAFWNMGENCSASSRLIVHAEVREALLERIGAQLREWRMGDPLDPRNRLGALVSPAHFEKVRAYLDQ
ARTERLAVRFGGATEAGIFVEPTVVDGVSPHSRLFREEIFGPLLSVTSFDDIDEAIALANDTVYGLAASAYT
GSLRHALRLSREIRAGIVTVNCFGEGDASTPFGGYKESGFGGRDKSVWAHDQYTELKTIWIDAS*
AnnotationID:803GeneID:794
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 14:02:54
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:aldH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):energy metabolism
EC Number:1.2.1.3
Status:ACTIVE
Pathway:
Ethanol utilization; second step.
Homology:
>emb|CAD15817.1| (AL646068) PROBABLE ALDEHYDE DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 502

 Score =  789 bits (2038), Expect = 0.0
 Identities = 383/494 (77%), Positives = 438/494 (88%)

>gb|AAL44761.1| (AE009326) aldehyde dehydrogenase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 505

 Score =  755 bits (1950), Expect = 0.0
 Identities = 365/496 (73%), Positives = 423/496 (85%)

>gb|AAO56553.1| (AE016867) aldehyde dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 505

 Score =  735 bits (1898), Expect = 0.0
 Identities = 355/496 (71%), Positives = 422/496 (85%)
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family.
CD-Length = 464 residues,  99.8% aligned
Score =  492 bits (1268), Expect = 4e-140
Identities = 220/469 (46%), Positives = 306/469 (65%), Gaps = 9/469 (1%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.6% aligned
Score =  484 bits (1247), Expect = 1e-137
Identities = 225/478 (47%), Positives = 305/478 (63%), Gaps = 10/478 (2%)
Genomic Context:






   
Comment:


















    ReferenceID:1591




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18733




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36916




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:794_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:794
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1408
                           PA4189_tr
                           translation of PA4189
                           496
                           99.99
                           99.99
                           0
                           2546.0
     

     
     
52137
                           gb|AAG07576.1|AE004835_5
                           (AE004835) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           496
                           99.99
                           99.99
                           0
                           2546.0
     

     
     
52138
                           emb|CAD15817.1|
                           (AL646068) PROBABLE ALDEHYDE DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           502
                           76.29
                           87.25
                           6
                           2037.0
     

     
     
52139
                           gb|AAL44761.1|
                           (AE009326) aldehyde dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           505
                           72.27
                           83.76
                           9
                           1950.0
     

     
     
52140
                           gb|AAK89467.1|
                           (AE008288) AGR_L_1790p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           511
                           71.42
                           82.77
                           15
                           1950.0
     

     






      

          
GC ORFID: 43796How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4189Glimmer Score: 

          
Start: 4117241Stop: 4118731

          
Length: 1491


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4189 translation of PA4189Homolog Bit Score 985.0

          
Other Homologs:  t_PA0219 (ORF: BLASTX 466.0), t_PA5312 (ORF: BLASTX 449.0), psyr_15may02_Scaffold2_revised_gene3152 (ORF: BLASTX 436.0), t_PA4073 (ORF: BLASTX 370.0), t_PA3504 (ORF: BLASTX 324.0), psyr_15may02_Scaffold1_revised_gene155 (ORF: BLASTX 317.0), t_PA4189 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAGCTGCTGAGCCGGGAGGAATACGCGGCCATCGCCGCGACGCTGGACCTTCCCCAGCGCGCCTTC 
ATCGACGGAGGGTTCCGCGATGCCTGCGGCGGCCGCACCTTCGCCTCGACCAACCCGGCCACCGGCGAGCTG 
CTGGCGCAGGTCGCCGCCTGCGACGCGGAGGACGTCGGGCACGCCGTGGCCAGCGCGCGGCGGGCGTTCGAG 
GACGGCCGCTGGCGCTCGCGCACGCCCGCCGAGCGCAAGGCGGCGCTGCTGCGCCTGGCCGAGCTGCTGGAA 
GAGCACCTGCTGGAACTGGCGGTGATGGAGAGCCTCGACAGCGGCAAGCCGATCCGCGAATGCCAGCACACC 
GACCTGCCGGAAACCATCAATACCCTGCGCTGGCATGCCGAACTGATCGACAAGATCTACGACAGCACCGCC 
CCGGTCGGTTCGGCGGCGCTGGCCATGGTGGTGCGCGAGCCGATCGGCGTGGTCGGCCTGGTGCTGCCGTGG 
AACTTCCCGCTGCTGATGCTCGCCTGGAAGATCGGCCCGGCGCTGGCGGCAGGCTGCTCCGTAGTGGTCAAG 
CCGGCCCCCGAGACCAGCCTGACCGCCCTGCGCGTCGCCGAACTGGCCAGCCAGGCGGGGATCCCCGCCGGG 
GTGTTCAACGTGGTCCCCGGCGGCGGCCGCGAGGCCGGCGAACCGCTGGGCCGCCACCCGGACGTGGCGATG 
GTCAGCTTCACCGGCTCCACCGCGACCGGCCGCCTGTTCCTCAAGTACGCCGCCGAGTCCAACCTCAAGCGG 
GTGGTACTGGAGTGCGGCGGCAAGAACCCGGCGGTGGTGATGAACGATGTCGAGGACCTCGACCTGGTGGCG 
CAACACGTGGTCAACGGCGCGTTCTGGAACATGGGCGAGAACTGCTCGGCGTCCTCGCGACTGATCGTCCAC 
GCCGAGGTCCGCGAGGCACTGCTCGAACGCATCGGCGCGCAGCTCCGCGAGTGGCGCATGGGCGACCCGCTG 
GATCCGCGTAATCGCCTCGGCGCGCTGGTCAGCCCGGCGCACTTCGAGAAGGTCCGCGCGTACCTCGACCAG 
GCCAGGACGGAGCGGTTGGCGGTGCGCTTCGGCGGCGCCACCGAGGCTGGCATCTTCGTCGAGCCGACCGTG 
GTCGATGGCGTCTCGCCGCACAGCCGGCTGTTCCGCGAGGAAATCTTCGGCCCGCTGCTCTCGGTCACCTCT 
TTCGACGACATCGACGAAGCCATCGCCCTGGCCAACGACACCGTCTACGGCCTCGCCGCCTCGGCCTACACC 
GGCAGCCTGCGCCACGCACTGCGCCTGTCGCGGGAGATCCGCGCGGGGATCGTCACCGTCAACTGCTTCGGC 
GAGGGCGACGCCTCGACGCCCTTCGGCGGCTACAAGGAGTCAGGCTTCGGCGGTCGCGACAAGTCGGTCTGG 
GCACACGACCAGTACACAGAGCTGAAGACCATCTGGATCGACGCTTCCTGA