ViewGene
Locus Name:
GeneID:
Location:

GeneID:793
TrivialName: PA14_47230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47230
PAO1 Ortholog Locus:PA1316
Sequence Length:1542
Protein Length:513
Start: 4208721
Stop: 4207180
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04705.1|AE004561_1 (AE004561) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 511/513 (99%), Positives = 512/513 (99%)
Sequence:
ATGAACCCTTCGCGTCGTGTCGCCCTGGTCGCCGCCATCTACCTGGGAACCTTCATCGCCTCGCTCGACATC
AGCATCGTCAACCTCGCCCTGCCGACGCTGCAGTACGCCCTGGATACCGACCTGGCCGGCCTGCAGTGGGTG
GTCGACGCCTATGCGCTGTGCCTGAGCGCCTTCATGCTGTCTTCCGGACCGCTGAGCGACCGCTACGGTCGC
AAGCTCACCTGGCTGCTCGGGGTCGGCCTGTTCAGCTTCGGTTCGCTGCTCTGCGCGCTGGCCACCTCGCTG
CCGCTGCTGCTGTTCGGACGCGCGGTCCAGGGCATCGCCGGGGCGCTGTTGATACCCGGCGCGCTGTCGATC
CTTACCCAGGCTTTCCACGATCCCGGCCAGCGCGCCCAGGTGATCGGCGGCTGGACCTCCTTCAGCGCGCTG
TCGCTGATCCTCGGCCCGCTGCTCGGCGGCCTGCTGGTGGAGCACGCCGGCTGGCAGAGCATCTTCCTGATC
AACCTGCCGCTCGGCCTGCTGGCGCTCGCCCTGGGCCTGTGGGGCATCGAGGAAACCGCGCACCCCGAGCAC
GCCGCCTTCGATCCCCTGGGGCAGCTGCTCAGCGTGGTCTGGCTGGGGGCGTTGACCTACGCCCTGATCGCC
GCGGGAGAGGGCGGCTGGTTGTCTCCCACGGCCTGGCCGGCGCTGCTCCTGGCCGGGGTCGGCCTGCTTGGC
TTCCTCTTCGTCGAGCGGCGGACCGCCCGACCGCTGCTGCCCCTGGGGTTGTTCCGCCAGGCCGGGTTCGCC
GTCTGCAACCTGGCCTCGTTCGTCCTCGGTTTTTCCGGCTACGCCAGCCTGTTCTTCCTCTCCCTGTTCTTC
CAGCAGGTGCAGGGTGCCTCGGCGCAGCAGGCCGGCTTCTACCTGGCGCCGCAGTTCCTCGCCATGGGCGCA
CTGTCCATGCTGTTCGGCCGGTTGCAGCGGCACGTACCGCTGCGACGCCTGCTGGTGCTGGGCTACCTGGTG
ATCGGCCTGGCCATGCTGGCGCTGGCCGCTTGCGGTACGGGAACCGCGTATCCCTGGGTCGGCCTGTTGCTG
GTGGCGCTCGGCCTGGGCATGGGCCTGGCCGTTCCCGGCACCGGTCTGGCGGTCATGGCGAGCGTGGCCCGC
GAGCGTTCCGGGATGGCCTCGGCGACCATGAATACCCTGCGCCAGGCCGGCATGGCCGTCGGCATCGCGTTG
CTGGGAGCGCTGCTGAGCGGGCGGGCGATCGTCGTCCTGGGCGATCGGCTGGAGGAGCTGGGGATTGCCGAT
GCGCAACGGCTCGCCACCCAGGCGATCACGGCCCATCGCTTGCCTGGTTCCCTGGCGGGGCTCGACGCCGAG
CTGCCGGCCGCGCTGGCCGAGGGCTTCCGTCTGGCTATGCTGGTGGCCGGAGCCAGCGCCCTGCTGGCCGCC
GCGCTGCTCTGGCGCCTGCGCGTTAGCGCCGGCCCGGCGGCGGATACAGTTGGCGCATCTGGACGAACGGCA
GGGGTACAGTTGCAGGCCGATAGACACTGA
Translation:
MNPSRRVALVAAIYLGTFIASLDISIVNLALPTLQYALDTDLAGLQWVVDAYALCLSAFMLSSGPLSDRYGR
KLTWLLGVGLFSFGSLLCALATSLPLLLFGRAVQGIAGALLIPGALSILTQAFHDPGQRAQVIGGWTSFSAL
SLILGPLLGGLLVEHAGWQSIFLINLPLGLLALALGLWGIEETAHPEHAAFDPLGQLLSVVWLGALTYALIA
AGEGGWLSPTAWPALLLAGVGLLGFLFVERRTARPLLPLGLFRQAGFAVCNLASFVLGFSGYASLFFLSLFF
QQVQGASAQQAGFYLAPQFLAMGALSMLFGRLQRHVPLRRLLVLGYLVIGLAMLALAACGTGTAYPWVGLLL
VALGLGMGLAVPGTGLAVMASVARERSGMASATMNTLRQAGMAVGIALLGALLSGRAIVVLGDRLEELGIAD
AQRLATQAITAHRLPGSLAGLDAELPAALAEGFRLAMLVAGASALLAAALLWRLRVSAGPAADTVGASGRTA
GVQLQADRH*
AnnotationID:802GeneID:793
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:30
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1316
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB49650.1| (AP002999) probable transporter [Mesorhizobium loti]
          Length = 505

 Score =  511 bits (1316), Expect = e-144
 Identities = 271/485 (55%), Positives = 334/485 (68%), Gaps = 4/485 (0%)

>emb|CAD55309.1| (AL939112) putative efflux protein [Streptomyces coelicolor A3(2)]
          Length = 481

 Score =  266 bits (680), Expect = 2e-70
 Identities = 160/416 (38%), Positives = 244/416 (58%), Gaps = 14/416 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1589




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37492




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:793_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:793
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1407
                           PA1316_tr
                           translation of PA1316
                           513
                           99.61
                           99.80
                           0
                           2546.0
     

     
     
52133
                           gb|AAG04705.1|AE004561_1
                           (AE004561) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           513
                           99.61
                           99.80
                           0
                           2546.0
     

     
     
52134
                           dbj|BAB49650.1|
                           (AP002999) probable transporter [Mesorhizobium loti]
                           517
                           53.96
                           66.34
                           16
                           1314.0
     

     
     
52135
                           emb|CAB55652.1|
                           (AL939104) putative transmembrane efflux protein [Streptomyces coelicolor A3(2)]
                           531
                           36.15
                           48.58
                           60
                           759.0
     

     
     
52136
                           gb|AAQ58395.1|
                           (AE016912) methylenomycin A resistance protein [Chromobacterium violaceum ATCC 12472]
                           525
                           35.61
                           47.04
                           76
                           617.0
     

     






      

          
GC ORFID: 43795How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1316Glimmer Score: 

          
Start: 745188Stop: 746729

          
Length: 1542


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1316 translation of PA1316Homolog Bit Score 985.0

          
Other Homologs:  t_PA1316 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCTTCGCGTCGTGTCGCCCTGGTCGCCGCCATCTACCTGGGAACCTTCATCGCCTCGCTCGACATC 
AGCATCGTCAACCTCGCCCTGCCGACGCTGCAGTACGCCCTGGATACCGACCTGGCCGGCCTGCAGTGGGTG 
GTCGACGCCTATGCGCTGTGCCTGAGCGCCTTCATGCTGTCTTCCGGACCGCTGAGCGACCGCTACGGTCGC 
AAGCTCACCTGGCTGCTCGGGGTCGGCCTGTTCAGCTTCGGTTCGCTGCTCTGCGCGCTGGCCACCTCGCTG 
CCGCTGCTGCTGTTCGGACGCGCGGTCCAGGGCATCGCCGGGGCGCTGTTGATACCCGGCGCGCTGTCGATC 
CTTACCCAGGCTTTCCACGATCCCGGCCAGCGCGCCCAGGTGATCGGCGGCTGGACCTCCTTCAGCGCGCTG 
TCGCTGATCCTCGGCCCGCTGCTCGGCGGCCTGCTGGTGGAGCACGCCGGCTGGCAGAGCATCTTCCTGATC 
AACCTGCCGCTCGGCCTGCTGGCGCTCGCCCTGGGCCTGTGGGGCATCGAGGAAACCGCGCACCCCGAGCAC 
GCCGCCTTCGATCCCCTGGGGCAGCTGCTCAGCGTGGTCTGGCTGGGGGCGTTGACCTACGCCCTGATCGCC 
GCGGGAGAGGGCGGCTGGTTGTCTCCCACGGCCTGGCCGGCGCTGCTCCTGGCCGGGGTCGGCCTGCTTGGC 
TTCCTCTTCGTCGAGCGGCGGACCGCCCGACCGCTGCTGCCCCTGGGGTTGTTCCGCCAGGCCGGGTTCGCC 
GTCTGCAACCTGGCCTCGTTCGTCCTCGGTTTTTCCGGCTACGCCAGCCTGTTCTTCCTCTCCCTGTTCTTC 
CAGCAGGTGCAGGGTGCCTCGGCGCAGCAGGCCGGCTTCTACCTGGCGCCGCAGTTCCTCGCCATGGGCGCA 
CTGTCCATGCTGTTCGGCCGGTTGCAGCGGCACGTACCGCTGCGACGCCTGCTGGTGCTGGGCTACCTGGTG 
ATCGGCCTGGCCATGCTGGCGCTGGCCGCTTGCGGTACGGGAACCGCGTATCCCTGGGTCGGCCTGTTGCTG 
GTGGCGCTCGGCCTGGGCATGGGCCTGGCCGTTCCCGGCACCGGTCTGGCGGTCATGGCGAGCGTGGCCCGC 
GAGCGTTCCGGGATGGCCTCGGCGACCATGAATACCCTGCGCCAGGCCGGCATGGCCGTCGGCATCGCGTTG 
CTGGGAGCGCTGCTGAGCGGGCGGGCGATCGTCGTCCTGGGCGATCGGCTGGAGGAGCTGGGGATTGCCGAT 
GCGCAACGGCTCGCCACCCAGGCGATCACGGCCCATCGCTTGCCTGGTTCCCTGGCGGGGCTCGACGCCGAG 
CTGCCGGCCGCGCTGGCCGAGGGCTTCCGTCTGGCTATGCTGGTGGCCGGAGCCAGCGCCCTGCTGGCCGCC 
GCGCTGCTCTGGCGCCTGCGCGTTAGCGCCGGCCCGGCGGCGGATACAGTTGGCGCATCTGGACGAACGGCA 
GGGGTACAGTTGCAGGCCGATAGACACTGA