ViewGene

Locus Name:
GeneID:
Location:

GeneID:792
TrivialName: PA14_23070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23070
PAO1 Ortholog Locus:PA3183
Sequence Length:1470
Protein Length:489
Start: 2000159
Stop: 2001628
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06571.1|AE004742_7 (AE004742) glucose-6-phosphate 1-dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 488/489 (99%), Positives = 488/489 (99%)
Sequence:
ATGCCTGATGTCCGCGTTCTGCCTTGCACGTTAGCGCTGTTCGGTGCGCTGGGCGATCTCGCCTTGCGCAAG
CTGTTCCCGGCGCTCTACCAACTCGATCGCGAGAACCTGCTGCACCGCGATACCCGCGTCCTGGCCCTGGCC
CGTGACGAAGGCGCTCCCGCCGAACACCTGGCGACGCTGGAGCAGCGCCTGCGCCTGGCAGTGCCGGCGAAG
GAGTGGGACGACGCGGTCTGGCAGCGTTTCCGCGAACGCCTCGACTACCTGAGCATGGACTTCCTCGACCCG
CAGGCCTATGTCGGCTTGCGCGAGGCGGTGGATGACGAACTGCCGCTGGTCGCCTACTTCGCCACGCCGGCC
TCGGTGTTCGGCGGCATCTGCGAGAACCTCGCCGCCGCCGGTCTCGCCGAGCGCACCCGGGTGGTGCTGGAG
AAGCCCATCGGTCATGACCTGGAGTCGTCCCGCGAGGTCAACGAGGCAGTCGCCCGGTTCTTCCCGGAAAGC
CGCATCTACCGGATCGACCATTACCTGGGCAAGGAGACGGTGCAGAACCTGATCGCCCTGCGCTTCGCCAAC
AGCCTCTTCGAGACCCAGTGGAACCAGAACCACATCTCCCACGTGGAGATCACCGTGGCCGAGAAGGTCGGC
ATCGAAGGCCGCTGGGGCTACTTCGACCAGGCCGGGCAACTGCGCGACATGGTGCAGAACCACCTGCTGCAA
CTGCTCTGCCTGATCGCCATGGATCCGCCCAGCGACCTTTCGGCGGACAGCATTCGCGACGAGAAGGTCAAG
GTGCTCCGCGCCCTCGAGCCGATTCCCGCCGAACAACTGGCTTCGCGCGTGGTGCGTGGGCAGTACACCGCC
GGTTTCAGCGACGGCAAGGCAGTGCCGGGCTACCTGGAGGAGGAACATGCGAATCGCGACAGCGACGCGGAA
ACCTTCGTCGCCCTGCGCGTGGATATCCGCAACTGGCGCTGGTCGGGCGTGCCGTTCTACCTGCGCACCGGC
AAGCGCATGCCGCAGAAGCTGTCGCAGATCGTCATCCACTTCAAGGAGCCGCCGCACTACATCTTCGCTCCC
GAGCAGCGTTCGCTGATCAGCAACCGGCTGATCATCCGCCTGCAGCCGGACGAAGGTATCTCCCTGCAAGTG
ATGACCAAGGACCAGGGCCTGGGCAAGGGCATGCAATTGCGTACCGGCCCGCTGCAACTGAGTTTTTCCGAG
ACCTACCACGCGGCGCGGATTCCCGATGCCTACGAGCGTCTGCTGCTGGAGGTCACCCAGGGCAACCAGTAC
CTGTTCGTGCGCAAGGACGAGGTGGAGTTCGCCTGGAAGTGGTGCGACCAACTGATCGCTGGCTGGGAACGC
CTGAGCGAAGCGCCCAAGCCGTATCCGGCGGGGAGTTGGGGGCCGGTGGCCTCGGTGGCCCTGGTGGCCCGC
GATGGGAGGAGTTGGTATGGCGATTTCTGA
Translation:
MPDVRVLPCTLALFGALGDLALRKLFPALYQLDRENLLHRDTRVLALARDEGAPAEHLATLEQRLRLAVPAK
EWDDAVWQRFRERLDYLSMDFLDPQAYVGLREAVDDELPLVAYFATPASVFGGICENLAAAGLAERTRVVLE
KPIGHDLESSREVNEAVARFFPESRIYRIDHYLGKETVQNLIALRFANSLFETQWNQNHISHVEITVAEKVG
IEGRWGYFDQAGQLRDMVQNHLLQLLCLIAMDPPSDLSADSIRDEKVKVLRALEPIPAEQLASRVVRGQYTA
GFSDGKAVPGYLEEEHANRDSDAETFVALRVDIRNWRWSGVPFYLRTGKRMPQKLSQIVIHFKEPPHYIFAP
EQRSLISNRLIIRLQPDEGISLQVMTKDQGLGKGMQLRTGPLQLSFSETYHAARIPDAYERLLLEVTQGNQY
LFVRKDEVEFAWKWCDQLIAGWERLSEAPKPYPAGSWGPVASVALVARDGRSWYGDF*
AnnotationID:801GeneID:792
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:00
Gene Name:zwf
Confidence Code:1
GeneProduct: glucose-6-phosphate 1-dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0364,pfam02781
Secondary Functional Category(ies):
EC Number:1.1.1.49
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54824.1| (AE016860) glucose-6-phosphate 1-dehydrogenase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 489

 Score =  782 bits (2020), Expect = 0.0
 Identities = 378/488 (77%), Positives = 426/488 (87%)

>emb|CAC14908.1| (AJ279003) glucose-6-phosphate 1-dehydrogenase [Pseudomonas putida]
          Length = 489

 Score =  767 bits (1981), Expect = 0.0
 Identities = 374/488 (76%), Positives = 421/488 (86%)

>dbj|BAB35985.1| (AP002559) glucose-6-phosphate dehydrogenase [Escherichia coli
           O157:H7]
          Length = 491

 Score =  535 bits (1379), Expect = e-151
 Identities = 265/479 (55%), Positives = 341/479 (71%), Gaps = 3/479 (0%)

Structural Features:
COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase
[Carbohydrate transport and metabolism]
CD-Length = 483 residues, 100.0% aligned
Score =  681 bits (1758), Expect = 0.0
Identities = 277/490 (56%), Positives = 355/490 (72%), Gaps = 10/490 (2%)

pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal domain.
CD-Length = 298 residues,  99.7% aligned
Score =  392 bits (1009), Expect = 4e-110
Identities = 155/302 (51%), Positives = 201/302 (66%), Gaps = 5/302 (1%)
Genomic Context:
Comment:
ReferenceID:1587
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18729
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32361
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:792_cdd.html
URL:
ReferenceID:33965
Author/Investigator(s): Petruschka L, Adolf K, Burchhardt G, Dernedde J, Jurgensen J, Herrmann H.
Title: Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strains H and KT2440.
PubMed: 12393206
MedLine:
Source:
FEMS Microbiol Lett. 2002 Sep 24;215(1):89-95.
Reference Type:Journal
Data:
URL:
ReferenceID:33966
Author/Investigator(s): Ma JF, Hager PW, Howell ML, Phibbs PV, Hassett DJ.
Title: Cloning and characterization of the Pseudomonas aeruginosa zwf gene encoding glucose-6-phosphate dehydrogenase, an enzyme important in resistance to methyl viologen (paraquat).
PubMed: 9537370
MedLine:
Source:
J Bacteriol. 1998 Apr;180(7):1741-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9537370
ReferenceID:33967
Author/Investigator(s): Temple L, Cuskey SM, Perkins RE, Bass RC, Morales NM, Christie GE, Olsen RH, Phibbs PV Jr.
Title: Analysis of cloned structural and regulatory genes for carbohydrate utilization in Pseudomonas aeruginosa PAO.
PubMed: 2121713
MedLine:
Source:
J Bacteriol. 1990 Nov;172(11):6396-402.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2121713
Homologs By Global Alignment
Gene ID:792

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1405 PA3183_tr translation of PA3183 489 99.79 99.79 0 2548.0
51898 gb|AAG06571.1|AE004742_7 (AE004742) glucose-6-phosphate 1-dehydrogenase [Pseudomonas aeruginosa PAO1] 489 99.79 99.79 0 2548.0
51899 gb|AAC38311.1| (AF029673) glucose-6-phosphate 1-dehydrogenase [Pseudomonas aeruginosa] 489 99.79 99.79 0 2548.0
51900 gb|AAO54824.1| (AE016860) glucose-6-phosphate 1-dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000] 489 77.30 87.11 0 2020.0
51902 emb|CAC14908.1| (AJ279003) glucose-6-phosphate 1-dehydrogenase [Pseudomonas putida] 489 76.48 86.09 0 1981.0
GC ORFID: 43794How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3183Glimmer Score:
Start: 2953772Stop: 2952303
Length: 1470
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3183 translation of PA3183Homolog Bit Score 986.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4424 (ORF: BLASTX 783.0), t_PA5439 (ORF: BLASTX 466.0), t_PA3183 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTGATGTCCGCGTTCTGCCTTGCACGTTAGCGCTGTTCGGTGCGCTGGGCGATCTCGCCTTGCGCAAG
CTGTTCCCGGCGCTCTACCAACTCGATCGCGAGAACCTGCTGCACCGCGATACCCGCGTCCTGGCCCTGGCC
CGTGACGAAGGCGCTCCCGCCGAACACCTGGCGACGCTGGAGCAGCGCCTGCGCCTGGCAGTGCCGGCGAAG
GAGTGGGACGACGCGGTCTGGCAGCGTTTCCGCGAACGCCTCGACTACCTGAGCATGGACTTCCTCGACCCG
CAGGCCTATGTCGGCTTGCGCGAGGCGGTGGATGACGAACTGCCGCTGGTCGCCTACTTCGCCACGCCGGCC
TCGGTGTTCGGCGGCATCTGCGAGAACCTCGCCGCCGCCGGTCTCGCCGAGCGCACCCGGGTGGTGCTGGAG
AAGCCCATCGGTCATGACCTGGAGTCGTCCCGCGAGGTCAACGAGGCAGTCGCCCGGTTCTTCCCGGAAAGC
CGCATCTACCGGATCGACCATTACCTGGGCAAGGAGACGGTGCAGAACCTGATCGCCCTGCGCTTCGCCAAC
AGCCTCTTCGAGACCCAGTGGAACCAGAACCACATCTCCCACGTGGAGATCACCGTGGCCGAGAAGGTCGGC
ATCGAAGGCCGCTGGGGCTACTTCGACCAGGCCGGGCAACTGCGCGACATGGTGCAGAACCACCTGCTGCAA
CTGCTCTGCCTGATCGCCATGGATCCGCCCAGCGACCTTTCGGCGGACAGCATTCGCGACGAGAAGGTCAAG
GTGCTCCGCGCCCTCGAGCCGATTCCCGCCGAACAACTGGCTTCGCGCGTGGTGCGTGGGCAGTACACCGCC
GGTTTCAGCGACGGCAAGGCAGTGCCGGGCTACCTGGAGGAGGAACATGCGAATCGCGACAGCGACGCGGAA
ACCTTCGTCGCCCTGCGCGTGGATATCCGCAACTGGCGCTGGTCGGGCGTGCCGTTCTACCTGCGCACCGGC
AAGCGCATGCCGCAGAAGCTGTCGCAGATCGTCATCCACTTCAAGGAGCCGCCGCACTACATCTTCGCTCCC
GAGCAGCGTTCGCTGATCAGCAACCGGCTGATCATCCGCCTGCAGCCGGACGAAGGTATCTCCCTGCAAGTG
ATGACCAAGGACCAGGGCCTGGGCAAGGGCATGCAATTGCGTACCGGCCCGCTGCAACTGAGTTTTTCCGAG
ACCTACCACGCGGCGCGGATTCCCGATGCCTACGAGCGTCTGCTGCTGGAGGTCACCCAGGGCAACCAGTAC
CTGTTCGTGCGCAAGGACGAGGTGGAGTTCGCCTGGAAGTGGTGCGACCAACTGATCGCTGGCTGGGAACGC
CTGAGCGAAGCGCCCAAGCCGTATCCGGCGGGGAGTTGGGGGCCGGTGGCCTCGGTGGCCCTGGTGGCCCGC
GATGGGAGGAGTTGGTATGGCGATTTCTGA