ViewGene
Locus Name:
GeneID:
Location:

GeneID:791
TrivialName: PA14_41710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41710
PAO1 Ortholog Locus:PA1767
Sequence Length:1527
Protein Length:508
Start: 3722462
Stop: 3723988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05156.1|AE004602_7 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 508/508 (100%), Positives = 508/508 (100%)
Sequence:
ATGCGCTCTCTCAACCTGCATCTGAAAGTCCTGATCGCCATCCTGCTGACCCTGGGTGTGGCGATCACCGCC
TATCAGATTTTCGTCCAGGGTATTCCCGTTACCGAAGCCGAAACCGATGACCTCTGGAACATCGATGCCAAG
GTCGACTTCGTCGCCACGCCGAAAACCCCGGTCAAGGTGCAGATGTTCGTTCCGCCGTTGAGCCAGGACTAC
GTCAGCCTCAACGAAAGCTTCGTCTCCAACAATTACGGCGTCAGCATCAATCGCGCCGACGGCAATCGCAAG
GTGACCTGGTCCGCCCGCCGCGCCAACGGCAAGCAGACCCTGTACTACCGCCTGGTGCTGACCAAGCGCTAC
ACCGGCGAGAAGACCAAGGAGAAAGGTCCGATCTTCCGCGACAGCCTGCCCCTGGAAGGCCCGGAGAAGATC
GCCGCAGAAGCCCTGCTGGCCCCCATTCGCCAGCACTCGGCCGACGTCGAGACCTTCGTCAGCGAAGCCATC
AAGCGCGCCAACAACGGCAACGACGACAACGTCAAGCTGCTGATGGCCGGCGACACCAGCCTGGAAAAGAAA
GCGCATATCGTCGAGACCCTGCTGTCCATCGCCCACGTGCCGATGGAGCGGGTCCACACCATCCGCCTGGTC
GCCGACCTGCAACAGAGCCCGGAACTGTGGCTGCGCAGCTTCAACGGCGAGAACTGGCTTTACTTCAACGTG
GTCACCGGCGAACAGGGCCTGCCCTCCGATCGCCTGATCTGGTGGCTTGGCGATGAGCCGCTGATGACCATC
GACGGCGGCAAGAAGGCCCAGGTCAGCTTCAGCCTGAACAGCAGCGAGATGAATGCCATCCGCCTGGCCAAG
CTGTCCGACGAGAACACCGAGGCGGCCTTCCTCGAGTACTCCCTGTACGGCCTGCCGCTGTCCACCCAGCAG
ACCTTCCAGATCATGATCATGATCCCGATCGGCGTGCTGGTGATCCTGATCCTGCGCAACCTGATCGGCCTG
CAGACCCTCGGCACCTTCACCCCGGTGCTGATCGCCCTGGCCTTCCGCGAGACCGGCCTGCAATGGGGTATC
GCCCTGTTCACCGTGATCACCGCCCTGGGCCTGTCGCTGCGCTCCTATCTCGAGCACCTGAAGCTGCAGATG
CTGCCGCGCCTCTCGGTGGTGCTGACCTTCGTGGTGGTGATGATCGCGGTGATCAGCCTGTTCAGCCACAAG
CTCGGCTTCGAGAGCGGCCTGTCGATCGCCCTGTTCCCGATGGTGATCCTGACCATGACCATCGAACGCCTG
TCGATCACCTGGGAAGAGCGCGGCGGCGGCCATGCGATGAAGGTGGCCATCGGCACCCTGTTCGCGGCATCG
CTGGCGCACATCCTCATGCGCATCCCGGAACTGGTGTACTTCATCTTCACCTTCCCGGCCGTGCTGCTGATC
CTGGTCGCCTTCATGCTCGCCATGGGCCGCTACCGCGGCTACCGCCTGACCGAGCTGTTCCGCTTCAAGGCC
CTGCTCAAGGACTGA
Translation:
MRSLNLHLKVLIAILLTLGVAITAYQIFVQGIPVTEAETDDLWNIDAKVDFVATPKTPVKVQMFVPPLSQDY
VSLNESFVSNNYGVSINRADGNRKVTWSARRANGKQTLYYRLVLTKRYTGEKTKEKGPIFRDSLPLEGPEKI
AAEALLAPIRQHSADVETFVSEAIKRANNGNDDNVKLLMAGDTSLEKKAHIVETLLSIAHVPMERVHTIRLV
ADLQQSPELWLRSFNGENWLYFNVVTGEQGLPSDRLIWWLGDEPLMTIDGGKKAQVSFSLNSSEMNAIRLAK
LSDENTEAAFLEYSLYGLPLSTQQTFQIMIMIPIGVLVILILRNLIGLQTLGTFTPVLIALAFRETGLQWGI
ALFTVITALGLSLRSYLEHLKLQMLPRLSVVLTFVVVMIAVISLFSHKLGFESGLSIALFPMVILTMTIERL
SITWEERGGGHAMKVAIGTLFAASLAHILMRIPELVYFIFTFPAVLLILVAFMLAMGRYRGYRLTELFRFKA
LLKD*
AnnotationID:800GeneID:791
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 08:08:49
Gene Name:
Confidence Code:3
GeneProduct:putative membrain protein
Cell Localization:()
Synonyms:PA1767
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55798.1| (AE016864) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 513

 Score =  825 bits (2132), Expect = 0.0








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:791
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1404
                           PA1767_tr
                           translation of PA1767
                           508
                           99.99
                           99.99
                           0
                           2550.0
     

     
     
51895
                           gb|AAG05156.1|AE004602_7
                           (AE004602) hypothetical protein PA1767 [Pseudomonas aeruginosa PAO1]
                           508
                           99.99
                           99.99
                           0
                           2550.0
     

     
     
51896
                           gb|AAN67944.1|AE016426_9
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           511
                           83.56
                           91.19
                           3
                           2194.0
     

     
     
51897
                           gb|AAO55798.1|
                           (AE016864) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           513
                           79.92
                           89.08
                           5
                           2132.0
     

     






      

          
GC ORFID: 43793How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1767Glimmer Score: 

          
Start: 1231447Stop: 1229921

          
Length: 1527


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1767 translation of PA1767Homolog Bit Score 986.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene376 (ORF: BLASTX 251.0), t_PA1767 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTCTCTCAACCTGCATCTGAAAGTCCTGATCGCCATCCTGCTGACCCTGGGTGTGGCGATCACCGCC 
TATCAGATTTTCGTCCAGGGTATTCCCGTTACCGAAGCCGAAACCGATGACCTCTGGAACATCGATGCCAAG 
GTCGACTTCGTCGCCACGCCGAAAACCCCGGTCAAGGTGCAGATGTTCGTTCCGCCGTTGAGCCAGGACTAC 
GTCAGCCTCAACGAAAGCTTCGTCTCCAACAATTACGGCGTCAGCATCAATCGCGCCGACGGCAATCGCAAG 
GTGACCTGGTCCGCCCGCCGCGCCAACGGCAAGCAGACCCTGTACTACCGCCTGGTGCTGACCAAGCGCTAC 
ACCGGCGAGAAGACCAAGGAGAAAGGTCCGATCTTCCGCGACAGCCTGCCCCTGGAAGGCCCGGAGAAGATC 
GCCGCAGAAGCCCTGCTGGCCCCCATTCGCCAGCACTCGGCCGACGTCGAGACCTTCGTCAGCGAAGCCATC 
AAGCGCGCCAACAACGGCAACGACGACAACGTCAAGCTGCTGATGGCCGGCGACACCAGCCTGGAAAAGAAA 
GCGCATATCGTCGAGACCCTGCTGTCCATCGCCCACGTGCCGATGGAGCGGGTCCACACCATCCGCCTGGTC 
GCCGACCTGCAACAGAGCCCGGAACTGTGGCTGCGCAGCTTCAACGGCGAGAACTGGCTTTACTTCAACGTG 
GTCACCGGCGAACAGGGCCTGCCCTCCGATCGCCTGATCTGGTGGCTTGGCGATGAGCCGCTGATGACCATC 
GACGGCGGCAAGAAGGCCCAGGTCAGCTTCAGCCTGAACAGCAGCGAGATGAATGCCATCCGCCTGGCCAAG 
CTGTCCGACGAGAACACCGAGGCGGCCTTCCTCGAGTACTCCCTGTACGGCCTGCCGCTGTCCACCCAGCAG 
ACCTTCCAGATCATGATCATGATCCCGATCGGCGTGCTGGTGATCCTGATCCTGCGCAACCTGATCGGCCTG 
CAGACCCTCGGCACCTTCACCCCGGTGCTGATCGCCCTGGCCTTCCGCGAGACCGGCCTGCAATGGGGTATC 
GCCCTGTTCACCGTGATCACCGCCCTGGGCCTGTCGCTGCGCTCCTATCTCGAGCACCTGAAGCTGCAGATG 
CTGCCGCGCCTCTCGGTGGTGCTGACCTTCGTGGTGGTGATGATCGCGGTGATCAGCCTGTTCAGCCACAAG 
CTCGGCTTCGAGAGCGGCCTGTCGATCGCCCTGTTCCCGATGGTGATCCTGACCATGACCATCGAACGCCTG 
TCGATCACCTGGGAAGAGCGCGGCGGCGGCCATGCGATGAAGGTGGCCATCGGCACCCTGTTCGCGGCATCG 
CTGGCGCACATCCTCATGCGCATCCCGGAACTGGTGTACTTCATCTTCACCTTCCCGGCCGTGCTGCTGATC 
CTGGTCGCCTTCATGCTCGCCATGGGCCGCTACCGCGGCTACCGCCTGACCGAGCTGTTCCGCTTCAAGGCC 
CTGCTCAAGGACTGA