ViewGene

Locus Name:
GeneID:
Location:

GeneID:790
TrivialName: PA14_66190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66190
PAO1 Ortholog Locus:PA5006
Sequence Length:1479
Protein Length:492
Start: 5897776
Stop: 5896298
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08391.1|AE004913_6 (AE004913) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 490/492 (99%), Positives = 491/492 (99%)
Sequence:
ATGAGACTGGCCGAACTGCAAGCCGCCGGGCGCCACCCGCAACTGCCATTGCGGGTGACCCTGGCGGATGGC
GCCGGCGCTGCCGAACTGCGCCTGGACAGTCTGCTGCGGGTGCTGCCCGGGCAGCGCTACGTCGGTGCCGGC
GAATGGCGTGGGCGCAAGGTGCTGGCCAAGCTGCTGGTGGGCGGCAAGGCCGCACGGCATTTCCAGCGCGAA
CTGGAAGGGGCGCGTCTGCTCGCGGCCCAGGGGCTGACCACCCCGGCGCTGCTGGCCGACGGGCTGCAGGAG
GGCGAGGGCGGCTGGCTGCTGTTCGACTACCTCGACGCGGCGCAGAGCCTCGGTGACGCCTGGCGTGCGGTG
GAGGCTCAGGCGCCGCTGGGCGATGCCCAGCAAGCGGTGCTCGGCGAAGCCCTGGCGGCCATTGGCGAGCTG
CATGCAAAGGGCCTCTGGCAGGACGACTTGCATCTGGACAACCTGTTGCGCCACGCCGGCCGCCTGTATCTC
ATCGACGGTGGCGGCGTGCGTGCGGAAACTCCCGGCCAGCCGCTGTCGCGACAGAAAGTGCTGGAAAACCTC
GGGGTGTTCTTCGCCCAGTTGCCGGCGCTCCTCGATCCTTTCCTGGAGGAGTTGCTGGTGCACTACCTGCTG
GCCAACGGCGAGCATGCGCTGCCGCTGGAAGCCTTGCAGAAGGAAATCGCCAAGGTTCGCCGCTGGCGGGTA
CGCGACCTGCTGAGGAAGGTCGGTCGCGACTGTAGCCTGTTCAGCGTCGTGCGCGGTCCGTTCCGCCTGTTC
GCCGCCCGCCGCAGCGAGGCCGAGACGATGGCGCCCCTGCTGGCGGACGCGGACCGCCTGATCGCCGCCGGC
CACGTCTACAAGGACGGCGGCGCGGCCACCGTCGCCCGGGTCGAAGCGAACGGCCGCACGCTGATCATCAAG
CGCTACAACATCAAGGGCTGGGTCCATTGGCTGAAGCGCTTCTGGCGGCCGAGCCGGGCCTGGGCCTCCTGG
CGCGAAGGCAACCGCCTGGAATTCCTCGGCATCGCCACCGCCCGTCCGCTGGCGATGCTGGAGCGGCGCTGG
TGCTGGCTGCGCGGGCGCGCCTACCTGATTACCGATTATCTCGGCGGTCAGGATATAATCGCTCGTTTTAAG
CCTTGCCTGGACATGCCCGATGGCGCCGTTTCGCCACCGGAAGCCGAGTTGGCGGCACTGGATCGGCTGTTT
TCGACGCTGATCCGCGAACGCATCAGCCACGGCGACCTGAAGGGACACAACCTGTTCTGGCAGGCCCATGAA
CAAGGCGGCGAATGGGCGCTGATCGACCTGGACGCGATGCGCAAGCATCACAGCCAGGCGTCCTTTGCCCGC
GCCTACGCCCGCGACCGCGCGCGCTTCCTGCGCAACTGGCCGCAGGACAGCGGCCTCTACCGGCTGCTGGAG
CAACGGATTCCCCGCCTCGGCGACGCCGCCGGGGCTTGA
Translation:
MRLAELQAAGRHPQLPLRVTLADGAGAAELRLDSLLRVLPGQRYVGAGEWRGRKVLAKLLVGGKAARHFQRE
LEGARLLAAQGLTTPALLADGLQEGEGGWLLFDYLDAAQSLGDAWRAVEAQAPLGDAQQAVLGEALAAIGEL
HAKGLWQDDLHLDNLLRHAGRLYLIDGGGVRAETPGQPLSRQKVLENLGVFFAQLPALLDPFLEELLVHYLL
ANGEHALPLEALQKEIAKVRRWRVRDLLRKVGRDCSLFSVVRGPFRLFAARRSEAETMAPLLADADRLIAAG
HVYKDGGAATVARVEANGRTLIIKRYNIKGWVHWLKRFWRPSRAWASWREGNRLEFLGIATARPLAMLERRW
CWLRGRAYLITDYLGGQDIIARFKPCLDMPDGAVSPPEAELAALDRLFSTLIRERISHGDLKGHNLFWQAHE
QGGEWALIDLDAMRKHHSQASFARAYARDRARFLRNWPQDSGLYRLLEQRIPRLGDAAGA*
AnnotationID:799GeneID:790
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5006
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1583
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18725
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35057
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:790_cdd.html
URL:
Homologs By Global Alignment
Gene ID:790

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1403 PA5006_tr translation of PA5006 492 99.59 99.79 0 2552.0
51892 gb|AAG08391.1|AE004913_6 (AE004913) hypothetical protein PA5006 [Pseudomonas aeruginosa PAO1] 492 99.59 99.79 0 2552.0
51893 gb|AAO58425.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 494 68.21 79.14 15 1723.0
51894 gb|AAN65978.1|AE016226_7 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 492 66.66 77.23 12 1683.0
GC ORFID: 43792How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5006Glimmer Score:
Start: 5161459Stop: 5159981
Length: 1479
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5006 translation of PA5006Homolog Bit Score 987.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3384 (ORF: BLASTX 661.0), t_PA5006 (ORF: GLIMMER)
GC ORF Sequence
ATGAGACTGGCCGAACTGCAAGCCGCCGGGCGCCACCCGCAACTGCCATTGCGGGTGACCCTGGCGGATGGC
GCCGGCGCTGCCGAACTGCGCCTGGACAGTCTGCTGCGGGTGCTGCCCGGGCAGCGCTACGTCGGTGCCGGC
GAATGGCGTGGGCGCAAGGTGCTGGCCAAGCTGCTGGTGGGCGGCAAGGCCGCACGGCATTTCCAGCGCGAA
CTGGAAGGGGCGCGTCTGCTCGCGGCCCAGGGGCTGACCACCCCGGCGCTGCTGGCCGACGGGCTGCAGGAG
GGCGAGGGCGGCTGGCTGCTGTTCGACTACCTCGACGCGGCGCAGAGCCTCGGTGACGCCTGGCGTGCGGTG
GAGGCTCAGGCGCCGCTGGGCGATGCCCAGCAAGCGGTGCTCGGCGAAGCCCTGGCGGCCATTGGCGAGCTG
CATGCAAAGGGCCTCTGGCAGGACGACTTGCATCTGGACAACCTGTTGCGCCACGCCGGCCGCCTGTATCTC
ATCGACGGTGGCGGCGTGCGTGCGGAAACTCCCGGCCAGCCGCTGTCGCGACAGAAAGTGCTGGAAAACCTC
GGGGTGTTCTTCGCCCAGTTGCCGGCGCTCCTCGATCCTTTCCTGGAGGAGTTGCTGGTGCACTACCTGCTG
GCCAACGGCGAGCATGCGCTGCCGCTGGAAGCCTTGCAGAAGGAAATCGCCAAGGTTCGCCGCTGGCGGGTA
CGCGACCTGCTGAGGAAGGTCGGTCGCGACTGTAGCCTGTTCAGCGTCGTGCGCGGTCCGTTCCGCCTGTTC
GCCGCCCGCCGCAGCGAGGCCGAGACGATGGCGCCCCTGCTGGCGGACGCGGACCGCCTGATCGCCGCCGGC
CACGTCTACAAGGACGGCGGCGCGGCCACCGTCGCCCGGGTCGAAGCGAACGGCCGCACGCTGATCATCAAG
CGCTACAACATCAAGGGCTGGGTCCATTGGCTGAAGCGCTTCTGGCGGCCGAGCCGGGCCTGGGCCTCCTGG
CGCGAAGGCAACCGCCTGGAATTCCTCGGCATCGCCACCGCCCGTCCGCTGGCGATGCTGGAGCGGCGCTGG
TGCTGGCTGCGCGGGCGCGCCTACCTGATTACCGATTATCTCGGCGGTCAGGATATAATCGCTCGTTTTAAG
CCTTGCCTGGACATGCCCGATGGCGCCGTTTCGCCACCGGAAGCCGAGTTGGCGGCACTGGATCGGCTGTTT
TCGACGCTGATCCGCGAACGCATCAGCCACGGCGACCTGAAGGGACACAACCTGTTCTGGCAGGCCCATGAA
CAAGGCGGCGAATGGGCGCTGATCGACCTGGACGCGATGCGCAAGCATCACAGCCAGGCGTCCTTTGCCCGC
GCCTACGCCCGCGACCGCGCGCGCTTCCTGCGCAACTGGCCGCAGGACAGCGGCCTCTACCGGCTGCTGGAG
CAACGGATTCCCCGCCTCGGCGACGCCGCCGGGGCTTGA