ViewGene
Locus Name:
GeneID:
Location:

GeneID:789
TrivialName: PA14_54150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54150
PAO1 Ortholog Locus:PA0783
Sequence Length:1521
Protein Length:506
Start: 4802672
Stop: 4801152
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04172.1|AE004513_4 (AE004513) sodium/proline symporter PutP [Pseudomonas aeruginosa PAO1]
Identities = 503/506 (99%), Positives = 506/506 (100%)
Sequence:
ATGAGTGTCAATACGCCCACGCTGATCACCTTCGTGATCTACATCGCGGCCATGGTCCTGATCGGCCTGGCG
GCATATCGCTCCACCAACAACTTCTCCGACTACATCCTCGGCGGCCGCAGCCTCGGCAGCTTCGTCACGGCG
CTGTCCGCCGGCGCCTCCGACATGAGCGGCTGGCTGCTGATGGGCCTGCCCGGCGCGGTGTACCTGTCCGGC
CTGTCCGAAAGCTGGATCGCCATCGGCCTGATCGTCGGCGCCTACCTCAACTGGCTGTTCGTCGCCGGCCGC
CTGCGGGTGCAGACCGAGCACAACGGCAACGCGCTGACCCTGCCCGATTACTTCACCAACCGCTTCGAGGAC
AACAGCCGCCTGCTGCGGATCTTCTCGGCCCTGGTGATCCTGGTGTTCTTCACCATCTACTGCGCTTCCGGC
ATCGTCGCCGGTGCGCGCCTGTTCGAGAGCACCTTCGGCCTCTCCTACGAGACTGCGCTGTGGGCCGGCGCC
GCGGCGACCATCGCCTACACCTTCATCGGCGGCTTCCTCGCGGTGAGCTGGACCGACACCGTGCAGGCCTCG
CTGATGATCTTCGCGCTGATCCTCACCCCGGTGATCGTGATGCTCGCCACCGGCGGCGTCGAGCCGACCTTC
ACCGCCATCGAGCTGAAGGACGCGACCAGCTTCGACATGCTCAAGGGCGCCTCCTTCATCGGCGTGATCTCG
CTGATGGCCTGGGGCCTGGGCTACTTCGGCCAGCCGCACATCCTGGCGCGCTTCATGGCCGCCGATTCGGTG
AAATCGATCCCGGCCGCGCGCCGCATCTCCATGACCTGGATGATCCTCTGCCTCGGCGGCGCCGTGGCCGTG
GGCTTCTTCGGCATCGCCTACTTCCAGGCGCATCCGGAGCAGGCCGGCGCGGTCAGCGACAACCCCGAGCGG
GTGTTCATCGAGCTGGCCAAGATCCTGTTCAACCCGTGGGTCGCCGGCGTGCTGCTGTCCGCCATCCTCGCC
GCGGTCATGAGCACCCTGAGCTGCCAGCTGCTGGTCTGCTCCTCGGCGCTCACCGAGGACTTCTACAAGGCC
TTCCTGCGCAAGGGCGCCAGCCAGCTGGAACTGGTCTGGGTCGGTCGCGCCATGGTGCTGCTGGTGGCGGTG
ATCGCCATCTGGCTGGCCGCCAACCCGGAAAACCGCGTGCTCGGCCTGGTGTCCTATGCCTGGGCCGGCTTC
GGCGCCGCTTTCGGCCCGCTGGTGCTGTTCTCCCTGCTGTGGAAGCGGATGACCCGCAACGGTGCGCTGGCC
GGCATGATCGTCGGCGCAGCGACAGTGATCCTGTGGAAGAaCCTGTTGGGCTGGACCGGCCTGTACGAGATC
ATCCCCGGCTTCCTCTTcgccaGCGTCGCCATCGTCGTCTTCAGCCTGCTCGGCAAGGCGCCTTCGACGAGC
ATGCTCAAGCGCTTCGACGATGCGGAGCAGGAGTACCGCGAGGCGCACCAGGGTTCCGCCGCTCCGGTAACC
CAGCGCTGA
Translation:
MSVNTPTLITFVIYIAAMVLIGLAAYRSTNNFSDYILGGRSLGSFVTALSAGASDMSGWLLMGLPGAVYLSG
LSESWIAIGLIVGAYLNWLFVAGRLRVQTEHNGNALTLPDYFTNRFEDNSRLLRIFSALVILVFFTIYCASG
IVAGARLFESTFGLSYETALWAGAAATIAYTFIGGFLAVSWTDTVQASLMIFALILTPVIVMLATGGVEPTF
TAIELKDATSFDMLKGASFIGVISLMAWGLGYFGQPHILARFMAADSVKSIPAARRISMTWMILCLGGAVAV
GFFGIAYFQAHPEQAGAVSDNPERVFIELAKILFNPWVAGVLLSAILAAVMSTLSCQLLVCSSALTEDFYKA
FLRKGASQLELVWVGRAMVLLVAVIAIWLAANPENRVLGLVSYAWAGFGAAFGPLVLFSLLWKRMTRNGALA
GMIVGAATVILWKNLLGWTGLYEIIPGFLFASVAIVVFSLLGKAPSTSMLKRFDDAEQEYREAHQGSAAPVT
QR*
AnnotationID:798GeneID:789
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 15:03:40
Gene Name:putP
Confidence Code:1
GeneProduct:sodium/proline symporter PutP
Cell Localization:(4) Inner membrane protein
Synonyms:PA0783
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00474, COG0591
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00474, SSF, Sodium:solute symporter family. Score: 370, 4e-103
COG0591, PutP, Na+/proline symporter.  Score: 346, 8e-96






   
Genomic Context:
Part of putAP operon; adjacent to putA (proline dehydrogenase). 






   
Comment:


















    ReferenceID:1581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:789
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1402
                           PA0783_tr
                           translation of PA0783
                           506
                           99.40
                           99.99
                           0
                           2551.0
     

     
     
51665
                           gb|AAG04172.1|AE004513_4
                           (AE004513) sodium/proline symporter PutP [Pseudomonas aeruginosa PAO1]
                           506
                           99.40
                           99.99
                           0
                           2551.0
     

     
     
51666
                           gb|AAO58444.1|
                           (AE016874) proline permease [Pseudomonas syringae pv. tomato str. DC3000]
                           506
                           83.20
                           89.92
                           11
                           2155.0
     

     
     
51667
                           dbj|BAA06838.1|
                           (D32069) proline permease [Pseudomonas fluorescens]
                           508
                           82.87
                           89.56
                           16
                           2125.0
     

     
     
51668
                           gb|AAC60490.1|
                           (S76070) proline permease [Pseudomonas fluorescens]
                           508
                           82.87
                           89.56
                           16
                           2125.0
     

     






      

          
GC ORFID: 43791How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0783Glimmer Score: 

          
Start: 151235Stop: 152755

          
Length: 1521


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0783 translation of PA0783Homolog Bit Score 987.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3368 (ORF: BLASTX 834.0), t_PA0783 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCAATACGCCCACGCTGATCACCTTCGTGATCTACATCGCGGCCATGGTCCTGATCGGCCTGGCG 
GCATATCGCTCCACCAACAACTTCTCCGACTACATCCTCGGCGGCCGCAGCCTCGGCAGCTTCGTCACGGCG 
CTGTCCGCCGGCGCCTCCGACATGAGCGGCTGGCTGCTGATGGGCCTGCCCGGCGCGGTGTACCTGTCCGGC 
CTGTCCGAAAGCTGGATCGCCATCGGCCTGATCGTCGGCGCCTACCTCAACTGGCTGTTCGTCGCCGGCCGC 
CTGCGGGTGCAGACCGAGCACAACGGCAACGCGCTGACCCTGCCCGATTACTTCACCAACCGCTTCGAGGAC 
AACAGCCGCCTGCTGCGGATCTTCTCGGCCCTGGTGATCCTGGTGTTCTTCACCATCTACTGCGCTTCCGGC 
ATCGTCGCCGGTGCGCGCCTGTTCGAGAGCACCTTCGGCCTCTCCTACGAGACTGCGCTGTGGGCCGGCGCC 
GCGGCGACCATCGCCTACACCTTCATCGGCGGCTTCCTCGCGGTGAGCTGGACCGACACCGTGCAGGCCTCG 
CTGATGATCTTCGCGCTGATCCTCACCCCGGTGATCGTGATGCTCGCCACCGGCGGCGTCGAGCCGACCTTC 
ACCGCCATCGAGCTGAAGGACGCGACCAGCTTCGACATGCTCAAGGGCGCCTCCTTCATCGGCGTGATCTCG 
CTGATGGCCTGGGGCCTGGGCTACTTCGGCCAGCCGCACATCCTGGCGCGCTTCATGGCCGCCGATTCGGTG 
AAATCGATCCCGGCCGCGCGCCGCATCTCCATGACCTGGATGATCCTCTGCCTCGGCGGCGCCGTGGCCGTG 
GGCTTCTTCGGCATCGCCTACTTCCAGGCGCATCCGGAGCAGGCCGGCGCGGTCAGCGACAACCCCGAGCGG 
GTGTTCATCGAGCTGGCCAAGATCCTGTTCAACCCGTGGGTCGCCGGCGTGCTGCTGTCCGCCATCCTCGCC 
GCGGTCATGAGCACCCTGAGCTGCCAGCTGCTGGTCTGCTCCTCGGCGCTCACCGAGGACTTCTACAAGGCC 
TTCCTGCGCAAGGGCGCCAGCCAGCTGGAACTGGTCTGGGTCGGTCGCGCCATGGTGCTGCTGGTGGCGGTG 
ATCGCCATCTGGCTGGCCGCCAACCCGGAAAACCGCGTGCTCGGCCTGGTGTCCTATGCCTGGGCCGGCTTC 
GGCGCCGCTTTCGGCCCGCTGGTGCTGTTCTCCCTGCTGTGGAAGCGGATGACCCGCAACGGTGCGCTGGCC 
GGCATGATCGTCGGCGCAGCGACAGTGATCCTGTGGAAGAaCCTGTTGGGCTGGACCGGCCTGTACGAGATC 
ATCCCCGGCTTCCTCTTcgccaGCGTCGCCATCGTCGTCTTCAGCCTGCTCGGCAAGGCGCCTTCGACGAGC 
ATGCTCAAGCGCTTCGACGATGCGGAGCAGGAGTACCGCGAGGCGCACCAGGGTTCCGCCGCTCCGGTAACC 
CAGCGCTGA