ViewGene

Locus Name:
GeneID:
Location:

GeneID:787
TrivialName: PA14_60390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60390
PAO1 Ortholog Locus:PA4562
Sequence Length:1539
Protein Length:512
Start: 5384843
Stop: 5383305
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07950.1|AE004870_1 (AE004870) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 512/512 (100%), Positives = 512/512 (100%)
Sequence:
ATGAATCTTCTCAAATCATTGGCGGCGGTGAGTTCCATCACCATGCTGTCGCGGGTCCTCGGCTTCGTCCGC
GATACCATCCTGGCGCGGATCTTCGGTGCCGGCCTCGCCACCGACGCCTTTTTCGTCGCCTTCAAGCTGCCC
AACCTGTTGCGGCGGATCTTCGCCGAGGGGGCGTTTTCCCAGGCTTTCGTGCCGATCCTGGCAGAGTACAAG
AACCAGCAGGGCGAGGAGGCGACGCGGACCTTCATCGCCTACGTTTCCGGCTTGCTCACGCTGGTGCTGGCG
CTGGTCACGGCGCTCGGCATCCTCGCCGCGCCCTGGGTTATCTGGGTCACCGCGCCGGGCTTCGCCGATACC
CCGGAAAAGTTCGCCCTGACCACCGACCTGCTGCGGGTGACCTTTCCTTATATATTGCTGATCTCGCTGTCG
TCCCTGGCCGGCGCGATCCTCAACACCTGGAACCGCTTCTCGGTGCCGGCCTTCGTGCCGACCCTGCTGAAC
GTCGCAATGATCGGCTTCGCGCTGTTCCTCACGCCTTATTTCGATCCGCCGGTCATGGTGCTGGGCTGGGCG
GTGCTGGCCGGCGGCCTGTTGCAGCTCCTCTATCAGCTGCCGCACCTGAGGAAGATCGGCATGCTCGTGCTG
CCGCGCCTGAACCTCAGGGACAGCGGCGTCTGGCGGGTGATGAAGCTGATGCTGCCGGCCATCCTGGGGGTC
TCGGTGAGCCAGATCTCGCTGATCATCAACACCATCTTCGCTTCGTTCCTGGCAGCCGGTTCGGTTTCCTGG
ATGTACTACGCCGACCGCCTGATGGAGCTGCCTTCCGGCGTATTGGGCGTGGCGCTGGGGACGATCCTCCTG
CCGATGCTGGCGAAGACCTATTCGAACAAGGATCGCCATGAGTACTCGCGCCTGCTCGACTGGGGCCTGCGC
CTGTGCTTCCTGCTGGTGCTGCCGTGTTCGCTGGCCCTGGCGATCCTCGCCGAACCTCTGACCGTCTCGCTG
TTCCAGTACGGCAAGTTCACCACGGTGGACGCGGCGATGACCCAGCGCGCGCTGGTCGCCTACTCCGTCGGC
CTGCTCGGCATCATCCTGGTCAAGGTTCTTGCGCCGGGCTTCTATGCCCAGCAGAACATCCGTACGCCAGTG
AAGATCGCGCTCTTCACCCTGGTTTCCACCCAGCTGATGAACCTGGCCTTCATCGGCCCGCTTCAGCATGCC
GGCCTGGCCCTGTCCATCGGCCTGGCGGCCTGCCTGAATGCCGGGCTGCTCTACTGGCAACTGCGCAAGCAG
CGTCTGTACCTGCCGCAACCGGGCTGGGCGAAGTTCCTGGTCAAGCTGGTGGTCGCGGTGCTGGCGATGTCG
GCGGTGCTGCTGGCCACGATGCACTGGCTGCCGGCCTGGGAGCAGGGCGCCATGCTGGAGCGATTCCTGCGC
CTCGGCCTGCTGGTGGTTGCCGGTCTCCTGGCCTATTTCGGTATGCTCGCGCTGCTGGGTTTCCGCCTGCGC
GACTTTTCCCGTCGGGCGGTGCTGTGA
Translation:
MNLLKSLAAVSSITMLSRVLGFVRDTILARIFGAGLATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYK
NQQGEEATRTFIAYVSGLLTLVLALVTALGILAAPWVIWVTAPGFADTPEKFALTTDLLRVTFPYILLISLS
SLAGAILNTWNRFSVPAFVPTLLNVAMIGFALFLTPYFDPPVMVLGWAVLAGGLLQLLYQLPHLRKIGMLVL
PRLNLRDSGVWRVMKLMLPAILGVSVSQISLIINTIFASFLAAGSVSWMYYADRLMELPSGVLGVALGTILL
PMLAKTYSNKDRHEYSRLLDWGLRLCFLLVLPCSLALAILAEPLTVSLFQYGKFTTVDAAMTQRALVAYSVG
LLGIILVKVLAPGFYAQQNIRTPVKIALFTLVSTQLMNLAFIGPLQHAGLALSIGLAACLNAGLLYWQLRKQ
RLYLPQPGWAKFLVKLVVAVLAMSAVLLATMHWLPAWEQGAMLERFLRLGLLVVAGLLAYFGMLALLGFRLR
DFSRRAVL*
AnnotationID:796GeneID:787
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 07:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative virulence factor, membrane protein
Cell Localization:()
Synonyms:mviN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0728,pfam03023
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66227.1|AE016251_3 (AE016776) membrane protein, MviN family [Pseudomonas putida
           KT2440]
          Length = 512

 Score =  858 bits (2216), Expect = 0.0
 Identities = 432/511 (84%), Positives = 471/511 (92%)

>gb|AAM85829.1|AE013830_1 (AE013830) putative virulence factor [Yersinia pestis KIM]
          Length = 511

 Score =  790 bits (2039), Expect = 0.0
 Identities = 393/509 (77%), Positives = 451/509 (88%)

>gb|AAN79809.1|AE016759_83 (AE016759) Virulence factor mviN homolog [Escherichia coli CFT073]
          Length = 511

 Score =  778 bits (2010), Expect = 0.0
 Identities = 385/511 (75%), Positives = 451/511 (88%)
Structural Features:
COG0728, MviN, Uncharacterized membrane protein, putative virulence factor
CD-Length = 518 residues,  98.8% aligned
Score =  457 bits (1177), Expect = 3e-129
Identities = 301/514 (58%), Positives = 372/514 (72%), Gaps = 6/514 (1%)

pfam03023, MVIN, MviN-like protein.
CD-Length = 454 residues,  99.3% aligned
Score =  367 bits (943), Expect = 4e-102
Identities = 218/454 (48%), Positives = 293/454 (64%), Gaps = 5/454 (1%)
Genomic Context:
Comment:
ReferenceID:1577
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18719
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31651
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:787_cdd.html
URL:
Homologs By Global Alignment
Gene ID:787

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1400 PA4562_tr translation of PA4562 512 99.99 99.99 0 2557.0
51591 gb|AAG07950.1|AE004870_1 (AE004870) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 512 99.99 99.99 0 2557.0
51593 gb|AAN66227.1|AE016251_3 (AE016776) membrane protein, MviN family [Pseudomonas putida KT2440] 512 84.37 91.99 0 2213.0
51592 gb|AAO54346.1| (AE016858) membrane protein, MviN family [Pseudomonas syringae pv. tomato str. DC3000] 512 84.17 93.16 0 2240.0
51595 emb|CAC90855.1| (AJ414151) putative membrane protein [Yersinia pestis CO92] 512 76.75 88.08 1 2036.0
GC ORFID: 43789How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4562Glimmer Score:
Start: 4648522Stop: 4646984
Length: 1539
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4562 translation of PA4562Homolog Bit Score 989.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3532 (ORF: BLASTX 874.0), t_PA4562 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCTTCTCAAATCATTGGCGGCGGTGAGTTCCATCACCATGCTGTCGCGGGTCCTCGGCTTCGTCCGC
GATACCATCCTGGCGCGGATCTTCGGTGCCGGCCTCGCCACCGACGCCTTTTTCGTCGCCTTCAAGCTGCCC
AACCTGTTGCGGCGGATCTTCGCCGAGGGGGCGTTTTCCCAGGCTTTCGTGCCGATCCTGGCAGAGTACAAG
AACCAGCAGGGCGAGGAGGCGACGCGGACCTTCATCGCCTACGTTTCCGGCTTGCTCACGCTGGTGCTGGCG
CTGGTCACGGCGCTCGGCATCCTCGCCGCGCCCTGGGTTATCTGGGTCACCGCGCCGGGCTTCGCCGATACC
CCGGAAAAGTTCGCCCTGACCACCGACCTGCTGCGGGTGACCTTTCCTTATATATTGCTGATCTCGCTGTCG
TCCCTGGCCGGCGCGATCCTCAACACCTGGAACCGCTTCTCGGTGCCGGCCTTCGTGCCGACCCTGCTGAAC
GTCGCAATGATCGGCTTCGCGCTGTTCCTCACGCCTTATTTCGATCCGCCGGTCATGGTGCTGGGCTGGGCG
GTGCTGGCCGGCGGCCTGTTGCAGCTCCTCTATCAGCTGCCGCACCTGAGGAAGATCGGCATGCTCGTGCTG
CCGCGCCTGAACCTCAGGGACAGCGGCGTCTGGCGGGTGATGAAGCTGATGCTGCCGGCCATCCTGGGGGTC
TCGGTGAGCCAGATCTCGCTGATCATCAACACCATCTTCGCTTCGTTCCTGGCAGCCGGTTCGGTTTCCTGG
ATGTACTACGCCGACCGCCTGATGGAGCTGCCTTCCGGCGTATTGGGCGTGGCGCTGGGGACGATCCTCCTG
CCGATGCTGGCGAAGACCTATTCGAACAAGGATCGCCATGAGTACTCGCGCCTGCTCGACTGGGGCCTGCGC
CTGTGCTTCCTGCTGGTGCTGCCGTGTTCGCTGGCCCTGGCGATCCTCGCCGAACCTCTGACCGTCTCGCTG
TTCCAGTACGGCAAGTTCACCACGGTGGACGCGGCGATGACCCAGCGCGCGCTGGTCGCCTACTCCGTCGGC
CTGCTCGGCATCATCCTGGTCAAGGTTCTTGCGCCGGGCTTCTATGCCCAGCAGAACATCCGTACGCCAGTG
AAGATCGCGCTCTTCACCCTGGTTTCCACCCAGCTGATGAACCTGGCCTTCATCGGCCCGCTTCAGCATGCC
GGCCTGGCCCTGTCCATCGGCCTGGCGGCCTGCCTGAATGCCGGGCTGCTCTACTGGCAACTGCGCAAGCAG
CGTCTGTACCTGCCGCAACCGGGCTGGGCGAAGTTCCTGGTCAAGCTGGTGGTCGCGGTGCTGGCGATGTCG
GCGGTGCTGCTGGCCACGATGCACTGGCTGCCGGCCTGGGAGCAGGGCGCCATGCTGGAGCGATTCCTGCGC
CTCGGCCTGCTGGTGGTTGCCGGTCTCCTGGCCTATTTCGGTATGCTCGCGCTGCTGGGTTTCCGCCTGCGC
GACTTTTCCCGTCGGGCGGTGCTGTGA