ViewGene
Locus Name:
GeneID:
Location:

GeneID:786
TrivialName: PA14_36170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36170
PAO1 Ortholog Locus:PA2207
Sequence Length:1521
Protein Length:506
Start: 3221908
Stop: 3223428
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05595.1|AE004647_4 (AE004647) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 503/506 (99%), Positives = 504/506 (99%)
Sequence:
ATGAGCGAATTCGATTCCCTGATGCAGGGCATGAGCCTGGTCCTCAGCGCCCATCACCTCGGCCTGATGGTG
ATCGGCGTGCTGCTCGGCATCCTGGTCGGCGTGCTGCCGGGCCTCGGTGCGCCGAACGGGGTGGCGCTGCTG
CTGCCGCTGACCTTCAGCATGTCGCCGGTGTCGGCGATCATCCTGCTTTCCTGCATGTACTGGGGCGCGTTG
TTCGGTGGCTCGATCACCTCGATCCTGTTCAACATCCCCGGCGAGCCCTCGTCGGTGGCCACCACCTTCGAC
GGCTACCCGATGGCGCGCAACGGCCAGGCCGGCGAAGCGCTGACCGCCGCCTTCACCTCGGCGCTCCTCGGG
GCGCTGGTCGGCGTGCTGCTGCTGACCTTCCTGTCCACCCATATCGCTCGCTTCGCCCTGGCGTTCAGCTCG
CCCGAGTTCTTCGCCGTCTACCTGCTGGCGTTCTGCACCTTCATCGGCATGAGCCGCAACCCGCCATTGAAG
ACCCTGGTGGCGATGACCATCGGCTTCGCCATGGCCGCCGTGGGCATGGATACCGTGTCCGGCGACCTGCGC
CTGACCTTCGACCAGCCCTGGCTGCTTTCCGGGCTGAGTTTCGAGGTGGCGGTGATCGGCCTGTTCGGCATC
GGCGAGATCCTCTGCACGGTGGAGGAAGGCCTGGTGTTTCGCGGCGAGCGCGCACGCATCACGCCGATGGTG
ATCCTGCGTACCTGGGCCAGGCTGCCGCGCTACTGGCTGACCTGGCTGCGCAGCGCGCTGGTCGGCTGCTGG
ATGGGCGTCACTCCGGGCGGCCCCACCGCAGCCTCGTTCATGAGCTACAGCCTGGCGCGGCGCTTCTCGAAG
AACCGCGAGAACTTCGGCAAGGGCGAGGTGGAAGGCGTGATCGCTCCGGAGACTGCCGACCACAGCGCCGGC
ACCAGCGCCCTGCTGCCGATGCTGACGCTCGGCATCCCCGGCTCGGCGACCGCCGCGGTGATGCTCGGTGGC
CTGATGATCTGGGGGCTGCATCCCGGGCCGACGCTGTTCGTCGAACAACACGACTTCGTCTGGGGCCTGATC
GCCAGCATGTACCTGGGCAACGTGGTCAGCCTGATCGTGGTACTGGCGACCGTACCGCTGTTCGCCTCGATC
CTGCGGATTCCGTTCGCCATCGTCGCGCCGATCATCGTCATGGTCTGCGCCATCGGGGCCTACTCGGTGCAC
AACGCCATGCTCGACGTGGTCCTGATGCTGCTGTTCGGCGCGCTCGGCTACCTGTTCAAGAAACTCGGCTAC
CCCATCGCCCCGCTGGTGCTCGCCGCGGTGCTCGGCGACAAGGCCGAGGACGCGTTCCGCCAGTCGATGCTG
TTCTCCGACGGGCAACTCTCGGTGTTCTGGTCCAACCCGCTGGTGGCCAGCCTGACCGGCGCGGCGCTGGCG
ATGCTGCTCTGGCCGTTGCTGGCGCGTTGCGCCGGGGCGCTGTTCCGGCGTGGCCGGCGGAGTCTCCGGCAT
GCCGCCTGA
Translation:
MSEFDSLMQGMSLVLSAHHLGLMVIGVLLGILVGVLPGLGAPNGVALLLPLTFSMSPVSAIILLSCMYWGAL
FGGSITSILFNIPGEPSSVATTFDGYPMARNGQAGEALTAAFTSALLGALVGVLLLTFLSTHIARFALAFSS
PEFFAVYLLAFCTFIGMSRNPPLKTLVAMTIGFAMAAVGMDTVSGDLRLTFDQPWLLSGLSFEVAVIGLFGI
GEILCTVEEGLVFRGERARITPMVILRTWARLPRYWLTWLRSALVGCWMGVTPGGPTAASFMSYSLARRFSK
NRENFGKGEVEGVIAPETADHSAGTSALLPMLTLGIPGSATAAVMLGGLMIWGLHPGPTLFVEQHDFVWGLI
ASMYLGNVVSLIVVLATVPLFASILRIPFAIVAPIIVMVCAIGAYSVHNAMLDVVLMLLFGALGYLFKKLGY
PIAPLVLAAVLGDKAEDAFRQSMLFSDGQLSVFWSNPLVASLTGAALAMLLWPLLARCAGALFRRGRRSLRH
AA*
AnnotationID:795GeneID:786
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 19:07:03
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:PA2207
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01970
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC49861.1| (AL603647) conserved hypothetical membrane protein [Sinorhizobium
           meliloti]
          Length = 512

 Score =  667 bits (1722), Expect = 0.0
 Identities = 333/497 (67%), Positives = 398/497 (80%)

>gb|AAN67038.1|AE016332_8 (AE016779) tricarboxylate transport protein TctA, putative
           [Pseudomonas putida KT2440]
          Length = 504

 Score =  374 bits (960), Expect = e-103
 Identities = 200/490 (40%), Positives = 299/490 (61%), Gaps = 5/490 (1%)

>gb|AAO70253.1| (AE016843) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 504

 Score =  362 bits (928), Expect = 4e-99
 Identities = 191/495 (38%), Positives = 307/495 (62%), Gaps = 11/495 (2%)








 
Structural Features:
pfam01970, DUF112, Integral membrane protein DUF112
CD-Length = 420 residues, 100.0% aligned
Score =  391 bits (1006), Expect = 1e-109
Identities = 209/422 (49%), Positives = 282/422 (66%), Gaps = 3/422 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1575




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32548




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:786_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:786
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1399
                           PA2207_tr
                           translation of PA2207
                           506
                           99.40
                           99.60
                           0
                           2556.0
     

     
     
51584
                           gb|AAG05595.1|AE004647_4
                           (AE004647) hypothetical protein PA2207 [Pseudomonas aeruginosa PAO1]
                           506
                           99.40
                           99.60
                           0
                           2556.0
     

     
     
51585
                           emb|CAC49861.1|
                           (AL603647) conserved hypothetical membrane protein [Sinorhizobium meliloti]
                           512
                           65.03
                           77.92
                           6
                           1716.0
     

     
     
51587
                           dbj|BAC49638.1|
                           (AP005951) blr4373 [Bradyrhizobium japonicum USDA 110]
                           514
                           63.03
                           77.82
                           9
                           1664.0
     

     
     
51586
                           dbj|BAC51297.1|
                           (AP005957) bll6032 [Bradyrhizobium japonicum USDA 110]
                           508
                           62.79
                           78.34
                           5
                           1678.0
     

     






      

          
GC ORFID: 43788How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2207Glimmer Score: 

          
Start: 1732008Stop: 1730488

          
Length: 1521


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2207 translation of PA2207Homolog Bit Score 989.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2601 (ORF: BLASTX 369.0), t_PA2207 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAATTCGATTCCCTGATGCAGGGCATGAGCCTGGTCCTCAGCGCCCATCACCTCGGCCTGATGGTG 
ATCGGCGTGCTGCTCGGCATCCTGGTCGGCGTGCTGCCGGGCCTCGGTGCGCCGAACGGGGTGGCGCTGCTG 
CTGCCGCTGACCTTCAGCATGTCGCCGGTGTCGGCGATCATCCTGCTTTCCTGCATGTACTGGGGCGCGTTG 
TTCGGTGGCTCGATCACCTCGATCCTGTTCAACATCCCCGGCGAGCCCTCGTCGGTGGCCACCACCTTCGAC 
GGCTACCCGATGGCGCGCAACGGCCAGGCCGGCGAAGCGCTGACCGCCGCCTTCACCTCGGCGCTCCTCGGG 
GCGCTGGTCGGCGTGCTGCTGCTGACCTTCCTGTCCACCCATATCGCTCGCTTCGCCCTGGCGTTCAGCTCG 
CCCGAGTTCTTCGCCGTCTACCTGCTGGCGTTCTGCACCTTCATCGGCATGAGCCGCAACCCGCCATTGAAG 
ACCCTGGTGGCGATGACCATCGGCTTCGCCATGGCCGCCGTGGGCATGGATACCGTGTCCGGCGACCTGCGC 
CTGACCTTCGACCAGCCCTGGCTGCTTTCCGGGCTGAGTTTCGAGGTGGCGGTGATCGGCCTGTTCGGCATC 
GGCGAGATCCTCTGCACGGTGGAGGAAGGCCTGGTGTTTCGCGGCGAGCGCGCACGCATCACGCCGATGGTG 
ATCCTGCGTACCTGGGCCAGGCTGCCGCGCTACTGGCTGACCTGGCTGCGCAGCGCGCTGGTCGGCTGCTGG 
ATGGGCGTCACTCCGGGCGGCCCCACCGCAGCCTCGTTCATGAGCTACAGCCTGGCGCGGCGCTTCTCGAAG 
AACCGCGAGAACTTCGGCAAGGGCGAGGTGGAAGGCGTGATCGCTCCGGAGACTGCCGACCACAGCGCCGGC 
ACCAGCGCCCTGCTGCCGATGCTGACGCTCGGCATCCCCGGCTCGGCGACCGCCGCGGTGATGCTCGGTGGC 
CTGATGATCTGGGGGCTGCATCCCGGGCCGACGCTGTTCGTCGAACAACACGACTTCGTCTGGGGCCTGATC 
GCCAGCATGTACCTGGGCAACGTGGTCAGCCTGATCGTGGTACTGGCGACCGTACCGCTGTTCGCCTCGATC 
CTGCGGATTCCGTTCGCCATCGTCGCGCCGATCATCGTCATGGTCTGCGCCATCGGGGCCTACTCGGTGCAC 
AACGCCATGCTCGACGTGGTCCTGATGCTGCTGTTCGGCGCGCTCGGCTACCTGTTCAAGAAACTCGGCTAC 
CCCATCGCCCCGCTGGTGCTCGCCGCGGTGCTCGGCGACAAGGCCGAGGACGCGTTCCGCCAGTCGATGCTG 
TTCTCCGACGGGCAACTCTCGGTGTTCTGGTCCAACCCGCTGGTGGCCAGCCTGACCGGCGCGGCGCTGGCG 
ATGCTGCTCTGGCCGTTGCTGGCGCGTTGCGCCGGGGCGCTGTTCCGGCGTGGCCGGCGGAGTCTCCGGCAT 
GCCGCCTGA