ViewGene

Locus Name:
GeneID:
Location:

GeneID:785
TrivialName: PA14_43030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43030
PAO1 Ortholog Locus:PA1658
Sequence Length:1476
Protein Length:491
Start: 3829062
Stop: 3827587
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05047.1|AE004593_9 (AE004593) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 491/491 (100%), Positives = 491/491 (100%)
Sequence:
ATGAGCACCAGTGCCGCACAGCAAGGCCGGAACCAGAACGGCGAATACAACATTCTCGACAGCATCATCGCC
GAGACCCGCCTGAGCCCGGACGACGAGGCCTACGACATCGCCAAGCGCGGCGTCTCCGCCTTCATCGAGGAA
TTGCTCAAGCCGCAGAACGACGGCGAGCCGGTGAAGAAGGCGATGGTCGACCGGATGATCGCCGAGATCGAT
GCCAAGCTCAGCACGCAGATGGACGAGATCCTCCATCATCCCGATTTCCAGGCGCTGGAGTCGGCCTGGCGC
GGCCTGCAACTGCTGGTCGACCGCACCAACTTCCGCGAGAACATCAAGATCGAGATTCTCAGCGTTTCCAAG
CAGGACCTGCTGGACGATTTCGAGGACTCGCCCGAGGTGATGCAGTCCGGCCTGTACAAGCACATCTACACC
GCCGAATACGGCCAGTTCGGTGGCCAGCCGGTCGGCGCCATCATCGCCAACTACTACATGTCGCCCAGTTCG
CCCGACGTCAAGCTGATGCAATACGTCTCCAGCGTGGCCTGCATGGCCCATGCGCCGTTCGTGGCGGCCGCC
GGTCCGAAGTTCTTCGGCCTGGAAAGCTTCACCGGCCTGCCGGACCTGAAGGACCTGAAGGATCATTTCGAA
GGCCCGCAGTTCGCCAAGTGGCAGAGCTTCCGCCAGTCCGAGGATTCCCGCTACGTGGCGCTGACCGTACCG
CGCTTCCTGCTGCGCACGCCCTACGATCCGGAAGAGAATCCGGTCAAGTCGTTCGCCTACAAGGAGACCGTG
GCCAATAGCCATGAGCATTACCTGTGGGGCAACACCGCCTATGCCTTCGGCACCAAGCTGACCGACAGCTTC
GCCAAGTATCGCTGGTGCCCGAACATCATCGGGCCGCAGAGCGGCGGTGCGGTGGAGGACCTGCCTTTGCAC
CACTTCGAGAGCATGGGCGAGATCGAGACCAAGATCCCCACCGAGGTGCTGGTGTCCGATCGCCGCGAGTAC
GAACTGGCCGAGGAAGGCTTCATTTCCCTGACCATGCGCAAGGGCAGCGACAACGCCGCGTTCTTCTCCGCC
AGCTCGGTGCAGAAGCCGAAGTTCTTCGGCATCAGCGCCGAAGGCAAGGCCGCGGAGCTGAACTACAAGCTC
GGCACCCAGTTGCCGTACATGATGATCGTCAACCGCCTGGCCCATTACCTGAAGGTCCTGCAACGCGAACAG
CTGGGGTCGTGGAAGGAGCGTACCGACCTCGAGCTGGAGCTGAACAAGTGGATCCGCCAGTACGTCGCCGAC
CAGGAAAACCCCAGCGCCGAAGTGCGCGGCCGTCGCCCGCTGCGCGCTGCACAGATCATCGTCAGTGACGTC
GAGGGCGAGCCGGGCTGGTACCGCGTCAGCCTGAACGTGCGCCCGCACTTCAAGTACATGGGGGCGGACTTC
ACCCTGTCGCTGGTCGGCAAGCTGGACAAAGAGTAA
Translation:
MSTSAAQQGRNQNGEYNILDSIIAETRLSPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKAMVDRMIAEID
AKLSTQMDEILHHPDFQALESAWRGLQLLVDRTNFRENIKIEILSVSKQDLLDDFEDSPEVMQSGLYKHIYT
AEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSVACMAHAPFVAAAGPKFFGLESFTGLPDLKDLKDHFE
GPQFAKWQSFRQSEDSRYVALTVPRFLLRTPYDPEENPVKSFAYKETVANSHEHYLWGNTAYAFGTKLTDSF
AKYRWCPNIIGPQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA
SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLELELNKWIRQYVAD
QENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE*
AnnotationID:794GeneID:785
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1658
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1573
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18715
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37183
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:785_cdd.html
URL:
Homologs By Global Alignment
Gene ID:785

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1397 PA1658_tr translation of PA1658 491 99.99 99.99 0 2559.0
51548 gb|AAG05047.1|AE004593_9 (AE004593) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 491 99.99 99.99 0 2559.0
51549 gb|AAO58854.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 492 93.08 96.54 1 2402.0
51550 gb|AAO56049.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 491 85.74 93.89 0 2276.0
51551 gb|AAF96022.1| (AE004353) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] 492 69.10 85.16 1 1875.0
GC ORFID: 43787How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1658Glimmer Score:
Start: 1124847Stop: 1126322
Length: 1476
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1658 translation of PA1658Homolog Bit Score 990.0
Other Homologs: t_PA2366 (ORF: BLASTX 398.0), psyr_15may02_Scaffold14_revised_gene2302 (ORF: BLASTX 386.0), t_PA0084 (ORF: BLASTX 354.0), t_PA1658 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACCAGTGCCGCACAGCAAGGCCGGAACCAGAACGGCGAATACAACATTCTCGACAGCATCATCGCC
GAGACCCGCCTGAGCCCGGACGACGAGGCCTACGACATCGCCAAGCGCGGCGTCTCCGCCTTCATCGAGGAA
TTGCTCAAGCCGCAGAACGACGGCGAGCCGGTGAAGAAGGCGATGGTCGACCGGATGATCGCCGAGATCGAT
GCCAAGCTCAGCACGCAGATGGACGAGATCCTCCATCATCCCGATTTCCAGGCGCTGGAGTCGGCCTGGCGC
GGCCTGCAACTGCTGGTCGACCGCACCAACTTCCGCGAGAACATCAAGATCGAGATTCTCAGCGTTTCCAAG
CAGGACCTGCTGGACGATTTCGAGGACTCGCCCGAGGTGATGCAGTCCGGCCTGTACAAGCACATCTACACC
GCCGAATACGGCCAGTTCGGTGGCCAGCCGGTCGGCGCCATCATCGCCAACTACTACATGTCGCCCAGTTCG
CCCGACGTCAAGCTGATGCAATACGTCTCCAGCGTGGCCTGCATGGCCCATGCGCCGTTCGTGGCGGCCGCC
GGTCCGAAGTTCTTCGGCCTGGAAAGCTTCACCGGCCTGCCGGACCTGAAGGACCTGAAGGATCATTTCGAA
GGCCCGCAGTTCGCCAAGTGGCAGAGCTTCCGCCAGTCCGAGGATTCCCGCTACGTGGCGCTGACCGTACCG
CGCTTCCTGCTGCGCACGCCCTACGATCCGGAAGAGAATCCGGTCAAGTCGTTCGCCTACAAGGAGACCGTG
GCCAATAGCCATGAGCATTACCTGTGGGGCAACACCGCCTATGCCTTCGGCACCAAGCTGACCGACAGCTTC
GCCAAGTATCGCTGGTGCCCGAACATCATCGGGCCGCAGAGCGGCGGTGCGGTGGAGGACCTGCCTTTGCAC
CACTTCGAGAGCATGGGCGAGATCGAGACCAAGATCCCCACCGAGGTGCTGGTGTCCGATCGCCGCGAGTAC
GAACTGGCCGAGGAAGGCTTCATTTCCCTGACCATGCGCAAGGGCAGCGACAACGCCGCGTTCTTCTCCGCC
AGCTCGGTGCAGAAGCCGAAGTTCTTCGGCATCAGCGCCGAAGGCAAGGCCGCGGAGCTGAACTACAAGCTC
GGCACCCAGTTGCCGTACATGATGATCGTCAACCGCCTGGCCCATTACCTGAAGGTCCTGCAACGCGAACAG
CTGGGGTCGTGGAAGGAGCGTACCGACCTCGAGCTGGAGCTGAACAAGTGGATCCGCCAGTACGTCGCCGAC
CAGGAAAACCCCAGCGCCGAAGTGCGCGGCCGTCGCCCGCTGCGCGCTGCACAGATCATCGTCAGTGACGTC
GAGGGCGAGCCGGGCTGGTACCGCGTCAGCCTGAACGTGCGCCCGCACTTCAAGTACATGGGGGCGGACTTC
ACCCTGTCGCTGGTCGGCAAGCTGGACAAAGAGTAA