ViewGene
Locus Name:
GeneID:
Location:

GeneID:784
TrivialName: PA14_73260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73260
PAO1 Ortholog Locus:PA5556
Sequence Length:1545
Protein Length:514
Start: 6525396
Stop: 6523852
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08941.1|AE004967_12 (AE004967) ATP synthase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 514/514 (100%), Positives = 514/514 (100%)
Sequence:
ATGCAGCAACTCAATCCTTCCGAAATTAGTGAAATCATCAAGGGGCGCATCGAGAAACTCGACGTCGCCTCC
CAAGCACGAAACGAAGGCACCATCGTCAGCGTGTCCGACGGTATCGTGCGCATCTACGGTCTGGCCGACGTC
ATGTACGGCGAGATGATCGAGTTCCCGGGCGGCGTCTACGGTATGGCGCTGAACCTGGAGCAGGATTCCGTG
GGTGCCGTGGTCCTGGGTGAATACCAGGGCCTCGCCGAAGGCATGAACGCCAAGTGCACCGGGCGCATCCTG
GAGGTTCCGGTTGGTCCGGAACTGCTGGGTCGCGTAGTCGATGCACTGGGCAATCCGATCGACGGCAAAGGC
CCGATCGACGCCAAGGCCACCGACGCGGTCGAGAAGGTCGCTCCGGGCGTGATCTGGCGTAAGTCGGTAGAC
CAGCCGGTACAGACCGGCTACAAGTCGGTCGACGCCATGATCCCGGTAGGCCGTGGCCAGCGCGAGCTGATC
ATCGGCGACCGCCAGATCGGCAAGACCGCCCTCGCGGTCGACGCCATCATCAACCAGAAAGACAGCGGCATT
AAGTGCGTCTACGTGGCCATCGGCCAGAAGCAGTCCACTATCGCCAACGTCGTACGCAAGCTGGAAGAGAAC
GGCGCCCTGGCCAACACCATCGTGGTCGCCGCCAGCGCTTCCGAGTCCGCCGCCCTGCAATACCTGGCGCCG
TACTCCGGTTGCACCATGGGCGAATACTTCCGTGATCGCGGTGAAGACGCCCTGATCGTCTACGACGACCTG
TCCAAGCAGGCCGTGGCTTATCGCCAGATCTCCCTGCTGCTGCGCCGTCCGCCGGGCCGCGAAGCCTACCCG
GGCGACGTGTTCTATCTCCACAGCCGTCTGCTGGAGCGCGCTTCCCGCGTTTCCGAAGAGTATGTCGAGAAG
TTCACCAACGGCGCCGTGACCGGCAAGACCGGCTCGCTGACCGCGCTGCCGATCATCGAGACCCAGGCCGGC
GACGTTTCCGCGTTCGTTCCGACCAACGTGATCTCGATCACCGACGGCCAGATCTTCCTGGAATCCGCCATG
TTCAACTCGGGTATCCGTCCGGCCGTCAACGCCGGTATCTCGGTATCCCGCGTAGGTGGCGCGGCCCAGACC
AAGATCATCAAGAAGCTGTCCGGCGGCATTCGTACCGCTCTGGCCCAGTACCGTGAACTGGCGGCCTTCGCC
CAGTTCGCCTCGGACCTGGACGAAGCGACCCGCAAGCAGCTGGAGCATGGTCAGCGCGTTACCGAGCTGATG
AAGCAGAAGCAGTACGCGCCGATGTCGATCGCCGAGATGTCGCTGTCCCTGTATGCCGCCGAGCGTGGCTTC
CTGCAGGACGTCGAAATCGCCAAGGTTGGTAGCTTCGAGCAGGCGTTGATCTCCTACTTCCAGCGCGAGCAT
GCCGCTCTGCTGGCGAAGATCAACGAGAAAGGTGACTTCAACGACGAAATCGACGCGGGCATCAAGGCCGGC
ATCGAGAAGTTCAAGGCCACCCAAACCTGGTAA
Translation:
MQQLNPSEISEIIKGRIEKLDVASQARNEGTIVSVSDGIVRIYGLADVMYGEMIEFPGGVYGMALNLEQDSV
GAVVLGEYQGLAEGMNAKCTGRILEVPVGPELLGRVVDALGNPIDGKGPIDAKATDAVEKVAPGVIWRKSVD
QPVQTGYKSVDAMIPVGRGQRELIIGDRQIGKTALAVDAIINQKDSGIKCVYVAIGQKQSTIANVVRKLEEN
GALANTIVVAASASESAALQYLAPYSGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYP
GDVFYLHSRLLERASRVSEEYVEKFTNGAVTGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAM
FNSGIRPAVNAGISVSRVGGAAQTKIIKKLSGGIRTALAQYRELAAFAQFASDLDEATRKQLEHGQRVTELM
KQKQYAPMSIAEMSLSLYAAERGFLQDVEIAKVGSFEQALISYFQREHAALLAKINEKGDFNDEIDAGIKAG
IEKFKATQTW*
AnnotationID:793GeneID:784
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:39
Gene Name:atpA
Confidence Code:2
GeneProduct:ATP synthase alpha chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F1, alpha subunit
Functional Category Confidence Code:5
COGs:COG0056,pfam00006
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59014.1| (AE016876) ATP synthase F1, alpha subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 514

 Score =  937 bits (2423), Expect = 0.0
 Identities = 481/514 (93%), Positives = 501/514 (97%)

>gb|AAM87679.1|AE014015_4 (AE014015) membrane-bound ATP synthase, F1 sector, alpha-subunit
           [Yersinia pestis KIM]
          Length = 513

 Score =  801 bits (2068), Expect = 0.0
 Identities = 408/512 (79%), Positives = 457/512 (89%)

>gb|AAN83092.1|AE016769_207 (AE016769) ATP synthase alpha chain [Escherichia coli CFT073]
          Length = 513

 Score =  796 bits (2057), Expect = 0.0
 Identities = 400/512 (78%), Positives = 457/512 (89%)






 
Structural Features:
COG0056, AtpA, F0F1-type ATP synthase, alpha subunit 
[Energy production and conversion]
CD-Length = 504 residues,  99.4% aligned
Score =  815 bits (2107), Expect = 0.0
Identities = 342/512 (66%), Positives = 416/512 (81%), Gaps = 11/512 (2%)

pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain.
CD-Length = 178 residues, 100.0% aligned
Score =  235 bits (601), Expect = 1e-62
Identities = 91/191 (47%), Positives = 119/191 (62%), Gaps = 13/191 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18713




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33339




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:784_cdd.html


    		




 
URL:

















    ReferenceID:35557




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35580




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839

















    ReferenceID:35582




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236

















    ReferenceID:35584




  
Author/Investigator(s):
         Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K.





  
Title:
        The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.




  
PubMed:
        6278247


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(1):33-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6278247

















    ReferenceID:35586




  
Author/Investigator(s):
        Inatomi K, Eya S, Maeda M, Futai M.





  
Title:
        Amino acid sequence of the alpha and beta subunits of Methanosarcina barkeri ATPase deduced from cloned genes. Similarity to subunits of eukaryotic vacuolar and F0F1-ATPases.




  
PubMed:
        2544575


MedLine:
        




    
Source:
J Biol Chem. 1989 Jul 5;264(19):10954-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2544575









           
Homologs By Global Alignment 

           

       



     
Gene ID:784
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1396
                           PA5556_tr
                           translation of PA5556
                           514
                           99.99
                           99.99
                           0
                           2562.0
     

     
     
51164
                           gb|AAG08941.1|AE004967_12
                           (AE004967) ATP synthase alpha chain [Pseudomonas aeruginosa PAO1]
                           514
                           99.99
                           99.99
                           0
                           2562.0
     

     
     
51165
                           gb|AAO59014.1|
                           (AE016876) ATP synthase F1, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           514
                           93.57
                           97.47
                           0
                           2423.0
     

     
     
51166
                           gb|AAN70979.1|AE016742_8
                           (AE016794) ATP synthase F1, alpha subunit [Pseudomonas putida KT2440]
                           514
                           91.43
                           96.69
                           0
                           2390.0
     

     
     
51168
                           gb|AAN57708.1|AE015907_6
                           (AE015907) ATP synthase F1, alpha subunit [Shewanella oneidensis MR-1]
                           514
                           79.76
                           89.49
                           1
                           2083.0
     

     






      

          
GC ORFID: 43786How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5556Glimmer Score: 

          
Start: 5789085Stop: 5787541

          
Length: 1545


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5556 translation of PA5556Homolog Bit Score 991.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4130 (ORF: BLASTX 936.0), t_PA5556 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCAACTCAATCCTTCCGAAATTAGTGAAATCATCAAGGGGCGCATCGAGAAACTCGACGTCGCCTCC 
CAAGCACGAAACGAAGGCACCATCGTCAGCGTGTCCGACGGTATCGTGCGCATCTACGGTCTGGCCGACGTC 
ATGTACGGCGAGATGATCGAGTTCCCGGGCGGCGTCTACGGTATGGCGCTGAACCTGGAGCAGGATTCCGTG 
GGTGCCGTGGTCCTGGGTGAATACCAGGGCCTCGCCGAAGGCATGAACGCCAAGTGCACCGGGCGCATCCTG 
GAGGTTCCGGTTGGTCCGGAACTGCTGGGTCGCGTAGTCGATGCACTGGGCAATCCGATCGACGGCAAAGGC 
CCGATCGACGCCAAGGCCACCGACGCGGTCGAGAAGGTCGCTCCGGGCGTGATCTGGCGTAAGTCGGTAGAC 
CAGCCGGTACAGACCGGCTACAAGTCGGTCGACGCCATGATCCCGGTAGGCCGTGGCCAGCGCGAGCTGATC 
ATCGGCGACCGCCAGATCGGCAAGACCGCCCTCGCGGTCGACGCCATCATCAACCAGAAAGACAGCGGCATT 
AAGTGCGTCTACGTGGCCATCGGCCAGAAGCAGTCCACTATCGCCAACGTCGTACGCAAGCTGGAAGAGAAC 
GGCGCCCTGGCCAACACCATCGTGGTCGCCGCCAGCGCTTCCGAGTCCGCCGCCCTGCAATACCTGGCGCCG 
TACTCCGGTTGCACCATGGGCGAATACTTCCGTGATCGCGGTGAAGACGCCCTGATCGTCTACGACGACCTG 
TCCAAGCAGGCCGTGGCTTATCGCCAGATCTCCCTGCTGCTGCGCCGTCCGCCGGGCCGCGAAGCCTACCCG 
GGCGACGTGTTCTATCTCCACAGCCGTCTGCTGGAGCGCGCTTCCCGCGTTTCCGAAGAGTATGTCGAGAAG 
TTCACCAACGGCGCCGTGACCGGCAAGACCGGCTCGCTGACCGCGCTGCCGATCATCGAGACCCAGGCCGGC 
GACGTTTCCGCGTTCGTTCCGACCAACGTGATCTCGATCACCGACGGCCAGATCTTCCTGGAATCCGCCATG 
TTCAACTCGGGTATCCGTCCGGCCGTCAACGCCGGTATCTCGGTATCCCGCGTAGGTGGCGCGGCCCAGACC 
AAGATCATCAAGAAGCTGTCCGGCGGCATTCGTACCGCTCTGGCCCAGTACCGTGAACTGGCGGCCTTCGCC 
CAGTTCGCCTCGGACCTGGACGAAGCGACCCGCAAGCAGCTGGAGCATGGTCAGCGCGTTACCGAGCTGATG 
AAGCAGAAGCAGTACGCGCCGATGTCGATCGCCGAGATGTCGCTGTCCCTGTATGCCGCCGAGCGTGGCTTC 
CTGCAGGACGTCGAAATCGCCAAGGTTGGTAGCTTCGAGCAGGCGTTGATCTCCTACTTCCAGCGCGAGCAT 
GCCGCTCTGCTGGCGAAGATCAACGAGAAAGGTGACTTCAACGACGAAATCGACGCGGGCATCAAGGCCGGC 
ATCGAGAAGTTCAAGGCCACCCAAACCTGGTAA