ViewGene
Locus Name:
GeneID:
Location:

GeneID:781
TrivialName: PA14_28050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28050
PAO1 Ortholog Locus:PA2788
Sequence Length:1596
Protein Length:531
Start: 2428256
Stop: 2429851
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06176.1|AE004706_6 (AE004706) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 528/531 (99%), Positives = 528/531 (99%)
Sequence:
ATGAACGAAAGCGTCGCCAGGGTGTTCGATCGGATTCTGCGGGGGCTCGGGTTGAAGACCCTGAACGCCCAG
TTCCTACTGTCCTATGCACTGATGTTCGGCCTGGCCGCCTGCGCCTCGGTGGCGTTGTACCTGAGCATGTCG
ATCTCGCCGGAAACCATCAACGTGGCCGGTGCGCAGCGCATGCTCAGCCAGAAGATGGCCCGCGAGGCGCTG
CAATTGCGACTCGGCGCCGGCGACCCAAAGGCCCTGGCCGCGACCATCGCCCAGTACGAACGCTCGGCCGCC
GACCTGGATGCGGGCAATGCCGAGCGCAACGTGAGCCGGATGGGCGCGCCGGAGATCGCCGCCCAGCGGCAG
AAGGTGGCGCAGATCTGGGGCCGCTATCGGGCCATGCTCGACCAGGTGGCACAGCCTGCCAGCCAGGTCGAC
CTGCGCGGCTTCTCGCAGTATTCCGCCGAGCTGTTGGGCGAGCTGAACAAACTGGTCTCGCTGATGAGCGCG
CGCGCCGACAGTGTCCAGCACACCCAGATGTGGATCGCCTTCGGTTGCCTGTTGGCGATCCTGGTGCTGGTG
GTGCTCGGCCGGCAGTTCGGCCTGGCGCCGCTGATGCGGCAGTTGCGTGGGTTGGAGGTGGCGCTGACCGAG
GTCGGTGCGGCTAACTTCACCCATGCCCTGGCGGCGGGCCATGCGGACAACGAGATCGGCCGCATCGTCGCC
GGCTACGAGCGGATGCGCCAGGACGTCAGCGGTCTGCTGGCGAACGTCAAGCGCAGCGCGGCAGAGACCGAC
AAGGACGTGGCCGAGGCCCTGGAGCAGGCGCTCGGTGCCGGCGACCAGGTGGCGCGCCAGCACCAGGACCTG
GACCAGGTGGCCACCGCGATGAACGAGATGAGCGCCACCGTGGCCGAGGTCGCCCGCCACGCCAACCATGCG
GCGCATTCCACCCGCGACGCCGCGGCCCTGGCCCACGAGGGACGCCGTCTGGTGGAGCACGCGAGCAGCCAG
ACCGGTGCCTTGGCGGAGGAACTGGAACAGACCGCCCTGGCGCTGAACACCCTGCACCAGCACGCCGGCAGC
GTCGGCCAGGTGCTTACGGTGATCAGCAGCATCGCCGAGCAGACCAACCTGCTGGCGCTCAATGCCGCCATC
GAGGCGGCGCGGGCCGGGGAGGCCGGGCGCGGCTTCGCCGTGGTGGCGGACGAGGTGCGTTCGCTGGCCAAC
CGTACCCAGCAGTCGACCCAGGAGATCCAGGGGCTGATCGAGCAGTTGCAGGACGGCGCCAACGATGCGGTA
GCCGCCATGCGCGGTAGCGCCAGCCATGCCCAGAGCAACCTCGCCGAGGCCGACAGCGCGGCCCAGGCGCTG
GGGCGCATCGTCGCCACGGTGGAAGAGCTGGACGGCCTCAACCAGCAGATCGCGACCGCCGCCGAGGAACAG
AGCCAGGTGGCCCAGGACATCGACCGCAACATCACCAACGTCTCCGGACTCTCCGAGCAGGCCCACGAAGGG
ACCGCCGCAGTGCTTTCGGCCAACCAGAGGGTCAAGGAGCACATGGCTGGCTTGCGCGTGGTGCTCGGTCGC
TTCCGCACCTGA
Translation:
MNESVARVFDRILRGLGLKTLNAQFLLSYALMFGLAACASVALYLSMSISPETINVAGAQRMLSQKMAREAL
QLRLGAGDPKALAATIAQYERSAADLDAGNAERNVSRMGAPEIAAQRQKVAQIWGRYRAMLDQVAQPASQVD
LRGFSQYSAELLGELNKLVSLMSARADSVQHTQMWIAFGCLLAILVLVVLGRQFGLAPLMRQLRGLEVALTE
VGAANFTHALAAGHADNEIGRIVAGYERMRQDVSGLLANVKRSAAETDKDVAEALEQALGAGDQVARQHQDL
DQVATAMNEMSATVAEVARHANHAAHSTRDAAALAHEGRRLVEHASSQTGALAEELEQTALALNTLHQHAGS
VGQVLTVISSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLANRTQQSTQEIQGLIEQLQDGANDAV
AAMRGSASHAQSNLAEADSAAQALGRIVATVEELDGLNQQIATAAEEQSQVAQDIDRNITNVSGLSEQAHEG
TAAVLSANQRVKEHMAGLRVVLGRFRT*
AnnotationID:790GeneID:781
AnnotatorUID: diggins
Modification Date/Time: 2004-12-07 09:09:32
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.






   
Genomic Context:






   
Comment:


















    ReferenceID:1565




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18707




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36268




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:781_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:781
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1391
                           PA2788_tr
                           translation of PA2788
                           531
                           99.43
                           99.43
                           0
                           2564.0
     

     
     
50947
                           gb|AAG06176.1|AE004706_6
                           (AE004706) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           531
                           99.43
                           99.43
                           0
                           2564.0
     

     
     
50953
                           dbj|BAC95399.1|
                           (AP005340) methyl-accepting chemotaxis protein [Vibrio vulnificus YJ016]
                           588
                           31.46
                           46.25
                           112
                           546.0
     

     
     
50952
                           gb|AAO10185.1|AE016802_228
                           (AE016802) Methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6]
                           588
                           31.46
                           45.57
                           118
                           545.0
     

     
     
50949
                           gb|AAO49591.1|
                           (AF550679) putative protein [Escherichia coli]
                           575
                           29.39
                           40.34
                           154
                           528.0
     

     






      

          
GC ORFID: 43783How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2788Glimmer Score: 

          
Start: 2525670Stop: 2524075

          
Length: 1596


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2788 translation of PA2788Homolog Bit Score 992.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4926 (ORF: BLASTX 219.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 200.0), t_PA2920 (ORF: BLASTX 199.0), psyr_15may02_Scaffold9_revised_gene8178 (ORF: BLASTX 194.0), psyr_15may02_Scaffold1_revised_gene618 (ORF: BLASTX 192.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 191.0), t_PA2788 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAAAGCGTCGCCAGGGTGTTCGATCGGATTCTGCGGGGGCTCGGGTTGAAGACCCTGAACGCCCAG 
TTCCTACTGTCCTATGCACTGATGTTCGGCCTGGCCGCCTGCGCCTCGGTGGCGTTGTACCTGAGCATGTCG 
ATCTCGCCGGAAACCATCAACGTGGCCGGTGCGCAGCGCATGCTCAGCCAGAAGATGGCCCGCGAGGCGCTG 
CAATTGCGACTCGGCGCCGGCGACCCAAAGGCCCTGGCCGCGACCATCGCCCAGTACGAACGCTCGGCCGCC 
GACCTGGATGCGGGCAATGCCGAGCGCAACGTGAGCCGGATGGGCGCGCCGGAGATCGCCGCCCAGCGGCAG 
AAGGTGGCGCAGATCTGGGGCCGCTATCGGGCCATGCTCGACCAGGTGGCACAGCCTGCCAGCCAGGTCGAC 
CTGCGCGGCTTCTCGCAGTATTCCGCCGAGCTGTTGGGCGAGCTGAACAAACTGGTCTCGCTGATGAGCGCG 
CGCGCCGACAGTGTCCAGCACACCCAGATGTGGATCGCCTTCGGTTGCCTGTTGGCGATCCTGGTGCTGGTG 
GTGCTCGGCCGGCAGTTCGGCCTGGCGCCGCTGATGCGGCAGTTGCGTGGGTTGGAGGTGGCGCTGACCGAG 
GTCGGTGCGGCTAACTTCACCCATGCCCTGGCGGCGGGCCATGCGGACAACGAGATCGGCCGCATCGTCGCC 
GGCTACGAGCGGATGCGCCAGGACGTCAGCGGTCTGCTGGCGAACGTCAAGCGCAGCGCGGCAGAGACCGAC 
AAGGACGTGGCCGAGGCCCTGGAGCAGGCGCTCGGTGCCGGCGACCAGGTGGCGCGCCAGCACCAGGACCTG 
GACCAGGTGGCCACCGCGATGAACGAGATGAGCGCCACCGTGGCCGAGGTCGCCCGCCACGCCAACCATGCG 
GCGCATTCCACCCGCGACGCCGCGGCCCTGGCCCACGAGGGACGCCGTCTGGTGGAGCACGCGAGCAGCCAG 
ACCGGTGCCTTGGCGGAGGAACTGGAACAGACCGCCCTGGCGCTGAACACCCTGCACCAGCACGCCGGCAGC 
GTCGGCCAGGTGCTTACGGTGATCAGCAGCATCGCCGAGCAGACCAACCTGCTGGCGCTCAATGCCGCCATC 
GAGGCGGCGCGGGCCGGGGAGGCCGGGCGCGGCTTCGCCGTGGTGGCGGACGAGGTGCGTTCGCTGGCCAAC 
CGTACCCAGCAGTCGACCCAGGAGATCCAGGGGCTGATCGAGCAGTTGCAGGACGGCGCCAACGATGCGGTA 
GCCGCCATGCGCGGTAGCGCCAGCCATGCCCAGAGCAACCTCGCCGAGGCCGACAGCGCGGCCCAGGCGCTG 
GGGCGCATCGTCGCCACGGTGGAAGAGCTGGACGGCCTCAACCAGCAGATCGCGACCGCCGCCGAGGAACAG 
AGCCAGGTGGCCCAGGACATCGACCGCAACATCACCAACGTCTCCGGACTCTCCGAGCAGGCCCACGAAGGG 
ACCGCCGCAGTGCTTTCGGCCAACCAGAGGGTCAAGGAGCACATGGCTGGCTTGCGCGTGGTGCTCGGTCGC 
TTCCGCACCTGA