ViewGene

Locus Name:
GeneID:
Location:

GeneID:780
TrivialName: PA14_62010
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62010
PAO1 Ortholog Locus:PA4688
Sequence Length:1539
Protein Length:512
Start: 5530657
Stop: 5532195
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08075.1|AE004882_6 (AE004882) iron (III)-transport system permease HitB [Pseudomonas aeruginosa PAO1]
Identities = 511/512 (99%), Positives = 511/512 (99%) to PA4688 of PAO1.
Sequence:
GTGCGCCTGCGCACGGGCTCGCGCCGGCGAACGCCATTCTGGCTGTTCCTGCCGGTCCTGCTCCTCGCCCTG
CTGGCCAGCCTGCCGCTGCTCTACGTCGCGGCCAAGGCCTGGGACGCCGGCTGGCACAGCGCCTGGCAACTG
CTCTGGCGCCCCTACGTATTCCGCTTGCTGGGCAACACCCTGTGGCTGATGTTCGGCGTGACCCTGCTCAGC
GCCCTGCTCGGCCTGGCCCTGGCCTGGTGCGTCGAGCGCAGCGACCTGCCGGCACggcGCTTCTGGAACGTG
GTGCTGTGCCTGCCGTTCGCCATCCCCGCCTTCGTCAGCAGTTTCACCTGGGTTTCGCTGAGCCCGATGTAC
GAAGGCCTCGGCGGCGCCATCCTGGTCATGACCATGTCCAAGTATCCGCTGGTCTACCTGCCGGTAGCGGCG
ACCCTGCGCGGCATCGATCCTTCCCTGGAGGAGTCGGCGCGGATGCTCGGTCTGTCGCGGCGCCAGGTGTTC
CTGCGGGTCACCCTGCCGCTGCTGCGCCCGACCCTGGCCGCCACCGGGCTACTGGTGGCGCTGCACATGCTG
GTGGAGTTCGGCGCGCTGTCGATCCTGCGCTACCAGACCTTCACCACAGCCATCTACCAGGAGTTCGAACTG
GAGTTCAGCAACGCCACCGCGGCGATGCTTTCCTCGGTACTCCTGGCACTGTGCTTCCTGCTGCTCTGGCTG
GAGTTGCGCATGCGCGGCCGCGGCCGCCTGGTACGCACCGGCCAGGGCAGCGCGCGGCGGGCCGAACGGGTC
CGCCTGGGGCTTGGCAAGTGGCCGCTCCAGGCGCTGCTGGCGACGCTGGTGCTGGTCGGTACCGGTATCCCC
CTGGTGATGCTCGGTTATTGGCTGTACGAAGGCTCCTCGGCCAGCTTCCCGCTGATGGAAATCGCCTCGACC
CTGCTTTCCTCCCTGTCGCTGGCCTTCGGCGGGGCCCTGCTCAGTTGCCTGCTGGCGCTGCCGGTAAGCATC
CTGGTGGTGCGCTACCCCGGCGCCCTGGCGCGCTGGACCCAGCGCCTGCCGTACCTGCTGCAAGCGTTGCCG
GGACTGGTGATCGCCCTCTCGCTGGTGTACTTCTCGCTGCACTACCTGCCAGCCACCTACCAGACCACCGGC
TTGCTGCTGGTCGCCTATGCCCTGCTGTTCATGCCGCTGACCCAGGCACCGATCCGCGTGGCCCTGGAAAAG
GCCTCGCCGCAGTTGGAGGAAGCCGCCCGCACTCTCGGCCAGACGCCCTTGATGGCCTTCCTGCGGATCACC
CTGCCGATCATCTCGCCGGCCATCGGCGCCGGATTCGTGCTGGTGTTCCTCGACACCATGAAGGAACTGACC
GCCACCCTGGTGCTAGGTCCCACCGGGCTGTCGACCCTGGCCACCTCGGTCTGGGTGCACACCGCCAACCTG
GAGTACGCTGCCGCCGCACCCTACGCCGCGCTGCTGATCCTGATCTCCGGCTTGCCGGTGTACCTGCTGACC
ACCCGGGCGCATCTCAGCACTCACTGA
Translation:
MRLRTGSRRRTPFWLFLPVLLLALLASLPLLYVAAKAWDAGWHSAWQLLWRPYVFRLLGNTLWLMFGVTLLS
ALLGLALAWCVERSDLPARRFWNVVLCLPFAIPAFVSSFTWVSLSPMYEGLGGAILVMTMSKYPLVYLPVAA
TLRGIDPSLEESARMLGLSRRQVFLRVTLPLLRPTLAATGLLVALHMLVEFGALSILRYQTFTTAIYQEFEL
EFSNATAAMLSSVLLALCFLLLWLELRMRGRGRLVRTGQGSARRAERVRLGLGKWPLQALLATLVLVGTGIP
LVMLGYWLYEGSSASFPLMEIASTLLSSLSLAFGGALLSCLLALPVSILVVRYPGALARWTQRLPYLLQALP
GLVIALSLVYFSLHYLPATYQTTGLLLVAYALLFMPLTQAPIRVALEKASPQLEEAARTLGQTPLMAFLRIT
LPIISPAIGAGFVLVFLDTMKELTATLVLGPTGLSTLATSVWVHTANLEYAAAAPYAALLILISGLPVYLLT
TRAHLSTH*
AnnotationID:789GeneID:780
AnnotatorUID: diggins
Modification Date/Time: 2006-01-15 13:01:44
Gene Name:hitB
Confidence Code:2
GeneProduct:putative iron ABC transporter, permease protein
Cell Localization:(4) Inner membrane protein
Synonyms:PA4688
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1178
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70450.1|AE016686_4 (AE016792) iron ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 521

 Score =  664 bits (1714), Expect = 0.0
 Identities = 340/504 (67%), Positives = 401/504 (79%)

>emb|CAB84124.1| (AL162754) putative iron-uptake permease inner membrane protein
           [Neisseria meningitidis Z2491]
          Length = 509

 Score =  429 bits (1103), Expect = e-119
 Identities = 228/500 (45%), Positives = 332/500 (66%), Gaps = 1/500 (0%)

>gb|AAB32111.1| (S72674) HitB [Haemophilus influenzae]
          Length = 506

 Score =  429 bits (1103), Expect = e-119
 Identities = 229/498 (45%), Positives = 326/498 (65%), Gaps = 3/498 (0%)
Structural Features:
COG1178, ThiP, ABC-type Fe3+ transport system, permease component 
[Inorganic ion transport and metabolism].
CD-Length = 540 residues,  98.0% aligned
Score =  286 bits (734), Expect = 3e-78
Identities = 206/531 (38%), Positives = 276/531 (51%), Gaps = 32/531 (6%)
Genomic Context:
Comment:
ReferenceID:14219
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18705
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38232
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:780_cdd.html
URL:
ReferenceID:38233
Author/Investigator(s): Adhikari P, Kirby SD, Nowalk AJ, Veraldi KL, Schryvers AB, Mietzner TA.
Title: Biochemical characterization of a Haemophilus influenzae periplasmic iron transport operon.
PubMed: 7559648
MedLine:
Source:
J Biol Chem. 1995 Oct 20;270(42):25142-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7559648&query_hl=10&itool=pubmed_docsum
ReferenceID:38234
Author/Investigator(s): Sanders JD, Cope LD, Hansen EJ.
Title: Identification of a locus involved in the utilization of iron by Haemophilus influenzae.
PubMed: 7927717
MedLine:
Source:
Infect Immun. 1994 Oct;62(10):4515-25.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=7927717
Homologs By Global Alignment
Gene ID:780

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1390 PA4688_tr translation of PA4688 512 99.80 99.80 0 2568.0
50936 gb|AAG08075.1|AE004882_6 (AE004882) iron (III)-transport system permease HitB [Pseudomonas aeruginosa PAO1] 512 99.60 99.80 0 2565.0
50937 gb|AAN70450.1|AE016686_4 (AE016792) iron ABC transporter, permease protein [Pseudomonas putida KT2440] 524 65.64 77.48 15 1711.0
50939 gb|AAB32111.1| (S72674) HitB [Haemophilus influenzae] 515 44.66 63.49 12 1101.0
50938 emb|CAB84124.1| (AL162754) putative iron-uptake permease inner membrane protein [Neisseria meningitidis Z2491] 513 44.63 64.91 5 1099.0
GC ORFID: 43782How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4688Glimmer Score:
Start: 4794337Stop: 4795875
Length: 1539
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4688 translation of PA4688Homolog Bit Score 993.0
Other Homologs: t_PA4688 (ORF: GLIMMER)
GC ORF Sequence
GTGCGCCTGCGCACGGGCTCGCGCCGGCGAACGCCATTCTGGCTGTTCCTGCCGGTCCTGCTCCTCGCCCTG
CTGGCCAGCCTGCCGCTGCTCTACGTCGCGGCCAAGGCCTGGGACGCCGGCTGGCACAGCGCCTGGCAACTG
CTCTGGCGCCCCTACGTATTCCGCTTGCTGGGCAACACCCTGTGGCTGATGTTCGGCGTGACCCTGCTCAGC
GCCCTGCTCGGCCTGGCCCTGGCCTGGTGCGTCGAGCGCAGCGACCTGCCGGCACggcGCTTCTGGAACGTG
GTGCTGTGCCTGCCGTTCGCCATCCCCGCCTTCGTCAGCAGTTTCACCTGGGTTTCGCTGAGCCCGATGTAC
GAAGGCCTCGGCGGCGCCATCCTGGTCATGACCATGTCCAAGTATCCGCTGGTCTACCTGCCGGTAGCGGCG
ACCCTGCGCGGCATCGATCCTTCCCTGGAGGAGTCGGCGCGGATGCTCGGTCTGTCGCGGCGCCAGGTGTTC
CTGCGGGTCACCCTGCCGCTGCTGCGCCCGACCCTGGCCGCCACCGGGCTACTGGTGGCGCTGCACATGCTG
GTGGAGTTCGGCGCGCTGTCGATCCTGCGCTACCAGACCTTCACCACAGCCATCTACCAGGAGTTCGAACTG
GAGTTCAGCAACGCCACCGCGGCGATGCTTTCCTCGGTACTCCTGGCACTGTGCTTCCTGCTGCTCTGGCTG
GAGTTGCGCATGCGCGGCCGCGGCCGCCTGGTACGCACCGGCCAGGGCAGCGCGCGGCGGGCCGAACGGGTC
CGCCTGGGGCTTGGCAAGTGGCCGCTCCAGGCGCTGCTGGCGACGCTGGTGCTGGTCGGTACCGGTATCCCC
CTGGTGATGCTCGGTTATTGGCTGTACGAAGGCTCCTCGGCCAGCTTCCCGCTGATGGAAATCGCCTCGACC
CTGCTTTCCTCCCTGTCGCTGGCCTTCGGCGGGGCCCTGCTCAGTTGCCTGCTGGCGCTGCCGGTAAGCATC
CTGGTGGTGCGCTACCCCGGCGCCCTGGCGCGCTGGACCCAGCGCCTGCCGTACCTGCTGCAAGCGTTGCCG
GGACTGGTGATCGCCCTCTCGCTGGTGTACTTCTCGCTGCACTACCTGCCAGCCACCTACCAGACCACCGGC
TTGCTGCTGGTCGCCTATGCCCTGCTGTTCATGCCGCTGACCCAGGCACCGATCCGCGTGGCCCTGGAAAAG
GCCTCGCCGCAGTTGGAGGAAGCCGCCCGCACTCTCGGCCAGACGCCCTTGATGGCCTTCCTGCGGATCACC
CTGCCGATCATCTCGCCGGCCATCGGCGCCGGATTCGTGCTGGTGTTCCTCGACACCATGAAGGAACTGACC
GCCACCCTGGTGCTAGGTCCCACCGGGCTGTCGACCCTGGCCACCTCGGTCTGGGTGCACACCGCCAACCTG
GAGTACGCTGCCGCCGCACCCTACGCCGCGCTGCTGATCCTGATCTCCGGCTTGCCGGTGTACCTGCTGACC
ACCCGGGCGCATCTCAGCACTCACTGA