ViewGene
Locus Name:
GeneID:
Location:

GeneID:779
TrivialName: PA14_13030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13030
PAO1 Ortholog Locus:PA3930
Sequence Length:1467
Protein Length:488
Start: 1117899
Stop: 1119365
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07317.1|AE004810_9 (AE004810) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa PAO1]
Identities = 487/488 (99%), Positives = 488/488 (100%)
Sequence:
ATGTTCGGATTGGAGGCTATCGACCTTGCCCGCATCCAGTTCGCGTTCACCGTGTCCTTCCACATCATCTTC
CCGGCGATCACCATCGGGTTGGCCAGCTACCTGGCCGTACTGGAAGGCCTCTGGCTGAAAACGAACGAAGAG
GTCTACCGCGACCTCTATCATTTCTGGTCGAAGATTTTCGCGGTCAACTTCGGCATGGGCGTGGTGTCCGGG
CTGGTCATGGCGTACCAGTTCGGCACCAACTGGAGCCATTTCTCCGACTTCGCCGGGTCCATCACCGGTCCG
CTGCTGACCTACGAGGTGCTCACCGCGTTCTTCCTCGAGGCCGGTTTCCTCGGTGTCATGCTGTTCGGCTGG
AACCGCGTGGGACCGGGCCTGCATTTCTTCGCCACGGTGATGGTGGCGATCGGCACGCTGATCTCGACGTTC
TGGATCCTCGCTTCCAACAGCTGGATGCAGACCCCGCAGGGCTTCGAGATCGTCGACGGCCGGGTGATCCCG
GTGGACTGGGTGGCGGTGATCTTCAACCCGTCGTTCCCCTACCGCCTGCTGCACATGTCGGTCGCCGCGTTC
CTCGCCACCGCCTTCTTCGTCGGCGCCTCGGCCGCCTGGCACTTGCTGCGCGGGCGCGACAACCCGGCGATC
CGCAAGATGCTCTCGATGGCCATGTGGATGGCGCTGATCGTCGCCCCGGTACAGGCGCTGATCGGCGACGCC
CATGGCCTCAACACCCTGGAGCACCAGCCGGCGAAGATCGCCGCGATGGAAGGCCACTGGGACAACAGCAGC
GGCGAGCCGACCCCGCTGATCCTGTTCGGCTGGCCGGACATGCAGCGCGAGGAAACCCGCTTCAAGGTGGAG
ATCCCGGTGCTCGGCAGCCTGATCCTCAAGCACAGCCTGACCGAGCCGATCCCGGCGCTGAAGGACTTCCCG
CCGGAAGACCGGCCGAACTCCACCGTGGTGTTCTGGTCGTTCCGGATCATGGCCGGCCTCGGCATGCTGATG
ATCCTGGTCGGCGTCTGGAGCCTGTGGCTGCGCTGGCGCGGCCAGGACAAGCTGTTCAACTCGAAGGCCTTC
CTGCGCCTGACCCTGCTGATGGGACCGTCCGGCCTGATCGCGATCCTCGCCGGCTGGTTCACCACCGAGATG
GGCCGCCAGCCCTGGGTGGTCTACGGACTGATGCGCACCGCCGACGCCTCCTCGGCGCAGAGCGTGACGCAG
ATGAGCCTGACCCTGCTGACCTTCGTGGTGGTGTACTTCTCGCTGTTCGGCGTCGGTATCGGCTACATGATG
CGCCTGGTGCGCAAGGGCCCGGTCACCCATGAGGGACGCGAGACCAACCCGGGAGGCGCCGGGCAGAAGCGC
ACGCCGGCGCGGCCGTTGTCGGCCGCCGGCGAAGGTTTCGACGAAGAGCACGACGGCCACGCGCAAGCGGCC
GACCGCGACCAGGACAAGAGGAACTGA
Translation:
MFGLEAIDLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTNEEVYRDLYHFWSKIFAVNFGMGVVSG
LVMAYQFGTNWSHFSDFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATVMVAIGTLISTF
WILASNSWMQTPQGFEIVDGRVIPVDWVAVIFNPSFPYRLLHMSVAAFLATAFFVGASAAWHLLRGRDNPAI
RKMLSMAMWMALIVAPVQALIGDAHGLNTLEHQPAKIAAMEGHWDNSSGEPTPLILFGWPDMQREETRFKVE
IPVLGSLILKHSLTEPIPALKDFPPEDRPNSTVVFWSFRIMAGLGMLMILVGVWSLWLRWRGQDKLFNSKAF
LRLTLLMGPSGLIAILAGWFTTEMGRQPWVVYGLMRTADASSAQSVTQMSLTLLTFVVVYFSLFGVGIGYMM
RLVRKGPVTHEGRETNPGGAGQKRTPARPLSAAGEGFDEEHDGHAQAADRDQDKRN*
AnnotationID:788GeneID:779
AnnotatorUID: urbach
Modification Date/Time: 2004-03-26 01:01:46
Gene Name:cioA
Confidence Code:1
GeneProduct:CioA, cyanide insensitive terminal oxidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01654,COG1271
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18703




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31597




  
Author/Investigator(s):
        Cunningham L, Pitt M, Williams HD.





  
Title:
        The cioAB genes from Pseudomonas aeruginosa code for a novel cyanide-insensitive terminal oxidase related to the cytochrome bd quinol oxidases.




  
PubMed:
        9179851


MedLine:
        97323403




    
Source:
Mol Microbiol. 1997 May;24(3):579-91.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=9179851&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:779
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1389
                           PA3930_tr
                           translation of PA3930
                           488
                           99.79
                           99.99
                           0
                           2566.0
     

     
     
50903
                           gb|AAG07317.1|AE004810_9
                           (AE004810) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa PAO1]
                           488
                           99.79
                           99.99
                           0
                           2566.0
     

     
     
50904
                           emb|CAA71555.1|
                           (Y10528) cyanide insensitive terminal oxidase [Pseudomonas aeruginosa]
                           488
                           99.79
                           99.99
                           0
                           2566.0
     

     
     
50906
                           gb|AAO58094.1|
                           (AE016872) cyanide-insensitive terminal oxidase CioA [Pseudomonas syringae pv. tomato str. DC3000]
                           494
                           77.93
                           86.03
                           21
                           2011.0
     

     
     
50905
                           gb|AAN70224.1|AE016661_10
                           (AE016791) ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas putida KT2440]
                           492
                           76.82
                           86.99
                           18
                           2054.0
     

     






      

          
GC ORFID: 43781How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3930Glimmer Score: 

          
Start: 3836039Stop: 3834573

          
Length: 1467


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3930 translation of PA3930Homolog Bit Score 993.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5395 (ORF: BLASTX 785.0), t_PA3930 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGGATTGGAGGCTATCGACCTTGCCCGCATCCAGTTCGCGTTCACCGTGTCCTTCCACATCATCTTC 
CCGGCGATCACCATCGGGTTGGCCAGCTACCTGGCCGTACTGGAAGGCCTCTGGCTGAAAACGAACGAAGAG 
GTCTACCGCGACCTCTATCATTTCTGGTCGAAGATTTTCGCGGTCAACTTCGGCATGGGCGTGGTGTCCGGG 
CTGGTCATGGCGTACCAGTTCGGCACCAACTGGAGCCATTTCTCCGACTTCGCCGGGTCCATCACCGGTCCG 
CTGCTGACCTACGAGGTGCTCACCGCGTTCTTCCTCGAGGCCGGTTTCCTCGGTGTCATGCTGTTCGGCTGG 
AACCGCGTGGGACCGGGCCTGCATTTCTTCGCCACGGTGATGGTGGCGATCGGCACGCTGATCTCGACGTTC 
TGGATCCTCGCTTCCAACAGCTGGATGCAGACCCCGCAGGGCTTCGAGATCGTCGACGGCCGGGTGATCCCG 
GTGGACTGGGTGGCGGTGATCTTCAACCCGTCGTTCCCCTACCGCCTGCTGCACATGTCGGTCGCCGCGTTC 
CTCGCCACCGCCTTCTTCGTCGGCGCCTCGGCCGCCTGGCACTTGCTGCGCGGGCGCGACAACCCGGCGATC 
CGCAAGATGCTCTCGATGGCCATGTGGATGGCGCTGATCGTCGCCCCGGTACAGGCGCTGATCGGCGACGCC 
CATGGCCTCAACACCCTGGAGCACCAGCCGGCGAAGATCGCCGCGATGGAAGGCCACTGGGACAACAGCAGC 
GGCGAGCCGACCCCGCTGATCCTGTTCGGCTGGCCGGACATGCAGCGCGAGGAAACCCGCTTCAAGGTGGAG 
ATCCCGGTGCTCGGCAGCCTGATCCTCAAGCACAGCCTGACCGAGCCGATCCCGGCGCTGAAGGACTTCCCG 
CCGGAAGACCGGCCGAACTCCACCGTGGTGTTCTGGTCGTTCCGGATCATGGCCGGCCTCGGCATGCTGATG 
ATCCTGGTCGGCGTCTGGAGCCTGTGGCTGCGCTGGCGCGGCCAGGACAAGCTGTTCAACTCGAAGGCCTTC 
CTGCGCCTGACCCTGCTGATGGGACCGTCCGGCCTGATCGCGATCCTCGCCGGCTGGTTCACCACCGAGATG 
GGCCGCCAGCCCTGGGTGGTCTACGGACTGATGCGCACCGCCGACGCCTCCTCGGCGCAGAGCGTGACGCAG 
ATGAGCCTGACCCTGCTGACCTTCGTGGTGGTGTACTTCTCGCTGTTCGGCGTCGGTATCGGCTACATGATG 
CGCCTGGTGCGCAAGGGCCCGGTCACCCATGAGGGACGCGAGACCAACCCGGGAGGCGCCGGGCAGAAGCGC 
ACGCCGGCGCGGCCGTTGTCGGCCGCCGGCGAAGGTTTCGACGAAGAGCACGACGGCCACGCGCAAGCGGCC 
GACCGCGACCAGGACAAGAGGAACTGA