ViewGene
Locus Name:
GeneID:
Location:

GeneID:778
TrivialName: PA14_43710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43710
PAO1 Ortholog Locus:PA1608
Sequence Length:1626
Protein Length:541
Start: 3891988
Stop: 3893613
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04997.1|AE004588_10 (AE004588) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 540/541 (99%), Positives = 541/541 (100%)
Sequence:
ATGTCTTTGCGCAGTATGCCCATCGCGACCCGTGCCGCCCTGAGTTTCGCCCTGATCACCGCTCTGCTGGTC
ATCACCGGCATCTTTTCCCTGAACCGAATGGGTTCGCTCAACGAAGCCTCTTCGGACATCAGCGACAACTGG
CTGCCTAGCGTCCGCGAAAGCGCCGAGTTGAACGTTCTGCTCGCCGAACTGCGGCAGGTGCAACTGGCCCAT
GTGCTGGCGGCGGACGACAGCAGCAAACGCTTCCTGGAAAGCCGCATGACGGAAATCGGCAAGGAACTGACC
GATCGCGAGGGCGCCTACCAACGGCTGATCAGTGGTGCCGACGAGCGCTCGATCTACGAGCGCTACCTGGCT
ACCCGGCAGACGCTCCTGCAAAGCCAGCAGACCCTGGTGCAGATGTCGCGCAGCAAGCCGCTGGAAGAGACC
CGCCAGTACACCGAAAGCACCTTGCTCGACCAGTACCGCGCCACCCAGCAGCAACTGCAGGCGCTGATCGAC
TTCAACGTCAAGGGCGCCAGCCAGGCCAGCCACACGGCCGATGAGGTCTATCACAGCGCCTTCGCCGCAGTG
ATCGGCGTACTGCTGGTCGCCGGCCTCGCTACCGTGGTACTGGCTTGGCTGTTCACCCGCAGCATCACCCAA
CCGATCGGCGAGGCGCTGCGAGTGGCCGAGGTGATCGCTTCCGGCGACCTCACCAGCCGCATCGACACCTCT
GGCCGCGACGAACCGGCCAAGTTGCTGGTCGCCCTCCAGGGCATGCAGGCACAACTGCGCCAGACCATCCAG
CAGATCGGCAGCTCGGCGACCCAACTGGCCTCCGCCGCGGAGGAACTCAGCGCCGTCACCGAGCAGGGCAAC
CGCTCGCTGACCCAGCAGAACGACGAAATCCAGATGGCCGCCACCGCGGTCAACGAGATGACCGCCGCCGTC
GAGGAAGTGGCGCGCAACGCCAGCTCCACCTCGGACGCCTCGTCCGCCTCCGAGCAATCGGCGCAGAACGGA
CGCCAGCGGGTACTGGAGACGGTCCAGGCGATCCGCCTGATGAGCGAAGAAGTGGACAATACCTCGGCGCTG
GTCGGCGGCCTGGCGGAAAAGGCCCAGGACATTTCCAAGGTCCTCGACGTGATCCGCGGTATCGCCGAACAG
ACCAATCTCCTGGCGCTCAACGCGGCCATCGAGGCGGCTCGCGCCGGCGAGCAGGGCCGCGGTTTCGCCGTG
GTCGCCGACGAGGTTCGCGCCCTCGCCCATCGCACCCAGGAATCCACCCGCGAGATCGAGCAGATGATCGCC
AACATCCAGGAAGGCACCGGCGCCGCGGTCGGCGCCATGGACAGCAGCAGCGTACGCGCCCGCAACATGCTG
GAGATCGCCGAAGCCGCCGGCCTGGCGCTGAACGAGATCGCGGAGCGGGTCGGCCAGATCAACGAGCGTACC
CTGGTGATCGCCAGCGCCTCCGAGCAGCAGGCCCAGGTGGCCCGCGAGGTCGACCGCAACCTGGTGAACATC
CGCGACATCTCGCTGCAGACGTCCGCCGGCTCCAACCAGACCGCCGCCGCCAGCCAGGAACTGTCGCAACTG
GCCATCGACCTGAACAACATGGTCACCCGCTTCGTCGTCTGA
Translation:
MSLRSMPIATRAALSFALITALLVITGIFSLNRMGSLNEASSDISDNWLPSVRESAELNVLLAELRQVQLAH
VLAADDSSKRFLESRMTEIGKELTDREGAYQRLISGADERSIYERYLATRQTLLQSQQTLVQMSRSKPLEET
RQYTESTLLDQYRATQQQLQALIDFNVKGASQASHTADEVYHSAFAAVIGVLLVAGLATVVLAWLFTRSITQ
PIGEALRVAEVIASGDLTSRIDTSGRDEPAKLLVALQGMQAQLRQTIQQIGSSATQLASAAEELSAVTEQGN
RSLTQQNDEIQMAATAVNEMTAAVEEVARNASSTSDASSASEQSAQNGRQRVLETVQAIRLMSEEVDNTSAL
VGGLAEKAQDISKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQESTREIEQMIA
NIQEGTGAAVGAMDSSSVRARNMLEIAEAAGLALNEIAERVGQINERTLVIASASEQQAQVAREVDRNLVNI
RDISLQTSAGSNQTAAASQELSQLAIDLNNMVTRFVV*
AnnotationID:787GeneID:778
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:PA1608
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54010.1| (AE016857) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 541

 Score =  496 bits (1278), Expect = e-139
 Identities = 277/541 (51%), Positives = 373/541 (68%)

>gb|AAN65948.1|AE016223_2 (AE016775) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 541

 Score =  477 bits (1227), Expect = e-134
 Identities = 277/539 (51%), Positives = 365/539 (67%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  94.9% aligned
Score =  172 bits (437), Expect = 8e-44
Identities = 141/390 (36%), Positives = 222/390 (56%), Gaps = 3/390 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues,  99.6% aligned
Score =  169 bits (429), Expect = 8e-43
Identities = 108/261 (41%), Positives = 166/261 (63%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  98.8% aligned
Score =  156 bits (395), Expect = 7e-39
Identities = 98/248 (39%), Positives = 153/248 (61%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18701




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37271




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:778_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:778
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1382
                           PA1608_tr
                           translation of PA1608
                           541
                           99.81
                           99.99
                           0
                           2567.0
     

     
     
50846
                           gb|AAG04997.1|AE004588_10
                           (AE004588) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           541
                           99.81
                           99.99
                           0
                           2567.0
     

     
     
1383
                           PA1251_tr
                           translation of PA1251
                           541
                           55.82
                           72.08
                           0
                           1391.0
     

     
     
50847
                           gb|AAG04640.1|AE004554_8
                           (AE004554) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           541
                           55.82
                           72.08
                           0
                           1391.0
     

     
     
50849
                           gb|AAN65948.1|AE016223_2
                           (AE016775) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           549
                           52.27
                           67.94
                           16
                           1227.0
     

     






      

          
GC ORFID: 43780How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1608Glimmer Score: 

          
Start: 1061921Stop: 1060296

          
Length: 1626


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1608 translation of PA1608Homolog Bit Score 993.0

          
Other Homologs:  t_PA1251 (ORF: BLASTX 540.0), psyr_15may02_Scaffold11_revised_gene1792 (ORF: BLASTX 440.0), psyr_15may02_Scaffold10_revised_gene1600 (ORF: BLASTX 430.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 424.0), psyr_15may02_Scaffold4_revised_gene5598 (ORF: BLASTX 422.0), psyr_15may02_Scaffold9_revised_gene8178 (ORF: BLASTX 420.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 404.0), psyr_15may02_Scaffold7_revised_gene7323 (ORF: BLASTX 380.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 377.0), t_PA2867 (ORF: BLASTX 239.0), t_PA1561 (ORF: BLASTX 229.0), t_PA1608 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTTTGCGCAGTATGCCCATCGCGACCCGTGCCGCCCTGAGTTTCGCCCTGATCACCGCTCTGCTGGTC 
ATCACCGGCATCTTTTCCCTGAACCGAATGGGTTCGCTCAACGAAGCCTCTTCGGACATCAGCGACAACTGG 
CTGCCTAGCGTCCGCGAAAGCGCCGAGTTGAACGTTCTGCTCGCCGAACTGCGGCAGGTGCAACTGGCCCAT 
GTGCTGGCGGCGGACGACAGCAGCAAACGCTTCCTGGAAAGCCGCATGACGGAAATCGGCAAGGAACTGACC 
GATCGCGAGGGCGCCTACCAACGGCTGATCAGTGGTGCCGACGAGCGCTCGATCTACGAGCGCTACCTGGCT 
ACCCGGCAGACGCTCCTGCAAAGCCAGCAGACCCTGGTGCAGATGTCGCGCAGCAAGCCGCTGGAAGAGACC 
CGCCAGTACACCGAAAGCACCTTGCTCGACCAGTACCGCGCCACCCAGCAGCAACTGCAGGCGCTGATCGAC 
TTCAACGTCAAGGGCGCCAGCCAGGCCAGCCACACGGCCGATGAGGTCTATCACAGCGCCTTCGCCGCAGTG 
ATCGGCGTACTGCTGGTCGCCGGCCTCGCTACCGTGGTACTGGCTTGGCTGTTCACCCGCAGCATCACCCAA 
CCGATCGGCGAGGCGCTGCGAGTGGCCGAGGTGATCGCTTCCGGCGACCTCACCAGCCGCATCGACACCTCT 
GGCCGCGACGAACCGGCCAAGTTGCTGGTCGCCCTCCAGGGCATGCAGGCACAACTGCGCCAGACCATCCAG 
CAGATCGGCAGCTCGGCGACCCAACTGGCCTCCGCCGCGGAGGAACTCAGCGCCGTCACCGAGCAGGGCAAC 
CGCTCGCTGACCCAGCAGAACGACGAAATCCAGATGGCCGCCACCGCGGTCAACGAGATGACCGCCGCCGTC 
GAGGAAGTGGCGCGCAACGCCAGCTCCACCTCGGACGCCTCGTCCGCCTCCGAGCAATCGGCGCAGAACGGA 
CGCCAGCGGGTACTGGAGACGGTCCAGGCGATCCGCCTGATGAGCGAAGAAGTGGACAATACCTCGGCGCTG 
GTCGGCGGCCTGGCGGAAAAGGCCCAGGACATTTCCAAGGTCCTCGACGTGATCCGCGGTATCGCCGAACAG 
ACCAATCTCCTGGCGCTCAACGCGGCCATCGAGGCGGCTCGCGCCGGCGAGCAGGGCCGCGGTTTCGCCGTG 
GTCGCCGACGAGGTTCGCGCCCTCGCCCATCGCACCCAGGAATCCACCCGCGAGATCGAGCAGATGATCGCC 
AACATCCAGGAAGGCACCGGCGCCGCGGTCGGCGCCATGGACAGCAGCAGCGTACGCGCCCGCAACATGCTG 
GAGATCGCCGAAGCCGCCGGCCTGGCGCTGAACGAGATCGCGGAGCGGGTCGGCCAGATCAACGAGCGTACC 
CTGGTGATCGCCAGCGCCTCCGAGCAGCAGGCCCAGGTGGCCCGCGAGGTCGACCGCAACCTGGTGAACATC 
CGCGACATCTCGCTGCAGACGTCCGCCGGCTCCAACCAGACCGCCGCCGCCAGCCAGGAACTGTCGCAACTG 
GCCATCGACCTGAACAACATGGTCACCCGCTTCGTCGTCTGA