ViewGene
Locus Name:
GeneID:
Location:

GeneID:777
TrivialName: PA14_59830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59830
PAO1 Ortholog Locus:
Sequence Length:1482
Protein Length:493
Start: 5328614
Stop: 5330095
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84161.1| (AY273869) putative DNA helicase [Pseudomonas aeruginosa]
Identities = 493/493 (100%), Positives = 493/493 (100%)
Sequence:
GTGCAGTGGACTCACGAACAGTCACCGATCATCCAGTCGAAGGCACCGAAGATCCTGGTGCGAGCCTTCGCA
GGCACTGGCAAAACTACCACCCTGGTGGGCTTTGCCAGGTCGAACCCTACCCTGAGAATCCTCTATCTCTGC
TACAACAGCTCGGTGGAGAAAGCCGCGAAGGGCAAGTTTCCCCGCAACGTAGTGTGCAAGACCGCCCACAGT
CTGGCTCATGCGGTGTACGGCATTCAGTACGCCCACAAGAAGACGAAGAACCTGCGACTGACCGATATCGCC
CGCGGACTCGATACCCAAGACTGGGAGTTGGTACGTGACGTGCTGGCCACGCTGAACAACTACATGGCCAGC
GCCGACGCGGAACTCGGCCGACCGCACTTCCCGCGCTTCCGCGACAAGGCGTTCCTCACCAGTGCTCAGGAA
CGCTTCCTCAAGCAGGGCCTGGACATGGCGCGAGTAGTCTGGAGGCGCATGGTCGATCTCCAGGACACCGGC
ATGCTGATGCCCCTTGACGGCTACCTGAAGCTGTATCAACTGAGCAAGCCCGATTTGAGCCAGCGCTTCGAC
TGCATGCTCCTGGACGAGGGGCAGGACATCAACCCAGTGATCGCGGACATTGCCCATTGGCAGCGCATCAGA
ATGGCTATCGTCGGCGATCCCCATCAGCAGCTCTACCGGTTCAGGGGCGCAGAAGATGCCCTGAACAGCGAC
TGGATGGCCGGCGCCGAGGAGCACTACCTGACCCAGAGCTGGCGATTCGGCCCCGCGATCGCACACGTGGCC
AACATCATCCTCTCCTACAAGGGCGAAACACGGAAACTTCAAGGACTGGGTCCGCAGACGCTGGTGAAAAAG
TCCCTCCCGCCGGACCTTCCTCACCGCACTTTCATTCACCGCACCGTTATCGGCGTCATCGAGAATGCCCTG
CAGCTGGTCCGCAATCATCCGGAGCCCAAATTCCACTGGGTAGGCGGTATCGACAGTTACTCGCTGCGCGAC
CTGGAGGATCTGTACGCATTCAGCCGAGGCCTGCGCCAAAACGTCCAGAACAAGAAACTGCTCCGTGACTAC
CGCGACTACACCCAGTACGTGGAGATCGCCGAGATCAGCCAGGACGGTGAGATGCTTCGCTCGATCAAGATC
ATATCGACCTACCCTGATCTGCCTGCGCGGATCCTTGAGCTTCGCTCACTGACCCTTGACGATGAGCTGGAC
GCAACAATCACCCTGACCACCGCACACAAGGCCAAGGGGCTGGAATGGGATTTCGTTTGCCTGTACGACGAC
TTCAACGCGGACCCGCTGGCCCCCGACACCGACCCAGGCAAGCGCGACGATGAGTTGAACCTGATCTACGTC
GCAGTGACCCGCGCGATGAAGATCCTTGCCATCAACAGCCTGGTGCTGTCGATCATGCAGCGGTACGTGGAC
GACAGAAAACTGAAGGAGCAGATAGCTAGCTGTAAAAAATGA
Translation:
MQWTHEQSPIIQSKAPKILVRAFAGTGKTTTLVGFARSNPTLRILYLCYNSSVEKAAKGKFPRNVVCKTAHS
LAHAVYGIQYAHKKTKNLRLTDIARGLDTQDWELVRDVLATLNNYMASADAELGRPHFPRFRDKAFLTSAQE
RFLKQGLDMARVVWRRMVDLQDTGMLMPLDGYLKLYQLSKPDLSQRFDCMLLDEGQDINPVIADIAHWQRIR
MAIVGDPHQQLYRFRGAEDALNSDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGPQTLVKK
SLPPDLPHRTFIHRTVIGVIENALQLVRNHPEPKFHWVGGIDSYSLRDLEDLYAFSRGLRQNVQNKKLLRDY
RDYTQYVEIAEISQDGEMLRSIKIISTYPDLPARILELRSLTLDDELDATITLTTAHKAKGLEWDFVCLYDD
FNADPLAPDTDPGKRDDELNLIYVAVTRAMKILAINSLVLSIMQRYVDDRKLKEQIASCKK*
AnnotationID:786GeneID:777
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 21:09:15
Gene Name:
Confidence Code:3
GeneProduct:putative helicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC41581.1| (AB088420) DNA helicase [Pseudomonas resinovorans]
          Length = 693

 Score =  500 bits (1288), Expect = e-141
 Identities = 268/486 (55%), Positives = 341/486 (70%), Gaps = 9/486 (1%)

>gb|AAO71808.1| (AE016849) putative DNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 503

 Score =  362 bits (930), Expect = 2e-99
 Identities = 200/472 (42%), Positives = 291/472 (61%), Gaps = 10/472 (2%)

>dbj|BAB93755.1| (AP004237) helicase [Proteus vulgaris]
          Length = 491

 Score =  295 bits (755), Expect = 4e-79
 Identities = 181/483 (37%), Positives = 277/483 (57%), Gaps = 19/483 (3%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17084




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-777.htm


    		




 
URL:

















    ReferenceID:18699




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:777
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
50839
                           gb|AAP84161.1|
                           (AY273869) putative DNA helicase [Pseudomonas aeruginosa]
                           493
                           99.79
                           99.99
                           0
                           2568.0
     

     
     
50840
                           gb|AAO54413.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           493
                           63.69
                           78.49
                           8
                           1644.0
     

     
     
50843
                           dbj|BAC41618.1|
                           (AB088420) putative helicase [Pseudomonas resinovorans]
                           507
                           41.81
                           59.56
                           33
                           969.0
     

     
     
50844
                           gb|AAO71808.1|
                           (AE016849) putative DNA helicase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           515
                           40.58
                           58.64
                           34
                           930.0
     

     
     
50845
                           emb|CAD06784.1|
                           (AL627283) putative DNA helicase [Salmonella enterica subsp. enterica serovar Typhi]
                           515
                           40.58
                           58.64
                           34
                           930.0
     

     






      

          
GC ORFID: 43779How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL034Glimmer Score: 

          
Start: 4592293Stop: 4593774

          
Length: 1482


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL034 493 Homolog: STY4664 / Putative DNA helicase / DNA replication / S.enterica subsp. enterica serovar Typhi / CT18 (CAD06784) translation of RL034Homolog Bit Score 994.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1634 (ORF: BLASTX 640.0), t_RL034 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAGTGGACTCACGAACAGTCACCGATCATCCAGTCGAAGGCACCGAAGATCCTGGTGCGAGCCTTCGCA 
GGCACTGGCAAAACTACCACCCTGGTGGGCTTTGCCAGGTCGAACCCTACCCTGAGAATCCTCTATCTCTGC 
TACAACAGCTCGGTGGAGAAAGCCGCGAAGGGCAAGTTTCCCCGCAACGTAGTGTGCAAGACCGCCCACAGT 
CTGGCTCATGCGGTGTACGGCATTCAGTACGCCCACAAGAAGACGAAGAACCTGCGACTGACCGATATCGCC 
CGCGGACTCGATACCCAAGACTGGGAGTTGGTACGTGACGTGCTGGCCACGCTGAACAACTACATGGCCAGC 
GCCGACGCGGAACTCGGCCGACCGCACTTCCCGCGCTTCCGCGACAAGGCGTTCCTCACCAGTGCTCAGGAA 
CGCTTCCTCAAGCAGGGCCTGGACATGGCGCGAGTAGTCTGGAGGCGCATGGTCGATCTCCAGGACACCGGC 
ATGCTGATGCCCCTTGACGGCTACCTGAAGCTGTATCAACTGAGCAAGCCCGATTTGAGCCAGCGCTTCGAC 
TGCATGCTCCTGGACGAGGGGCAGGACATCAACCCAGTGATCGCGGACATTGCCCATTGGCAGCGCATCAGA 
ATGGCTATCGTCGGCGATCCCCATCAGCAGCTCTACCGGTTCAGGGGCGCAGAAGATGCCCTGAACAGCGAC 
TGGATGGCCGGCGCCGAGGAGCACTACCTGACCCAGAGCTGGCGATTCGGCCCCGCGATCGCACACGTGGCC 
AACATCATCCTCTCCTACAAGGGCGAAACACGGAAACTTCAAGGACTGGGTCCGCAGACGCTGGTGAAAAAG 
TCCCTCCCGCCGGACCTTCCTCACCGCACTTTCATTCACCGCACCGTTATCGGCGTCATCGAGAATGCCCTG 
CAGCTGGTCCGCAATCATCCGGAGCCCAAATTCCACTGGGTAGGCGGTATCGACAGTTACTCGCTGCGCGAC 
CTGGAGGATCTGTACGCATTCAGCCGAGGCCTGCGCCAAAACGTCCAGAACAAGAAACTGCTCCGTGACTAC 
CGCGACTACACCCAGTACGTGGAGATCGCCGAGATCAGCCAGGACGGTGAGATGCTTCGCTCGATCAAGATC 
ATATCGACCTACCCTGATCTGCCTGCGCGGATCCTTGAGCTTCGCTCACTGACCCTTGACGATGAGCTGGAC 
GCAACAATCACCCTGACCACCGCACACAAGGCCAAGGGGCTGGAATGGGATTTCGTTTGCCTGTACGACGAC 
TTCAACGCGGACCCGCTGGCCCCCGACACCGACCCAGGCAAGCGCGACGATGAGTTGAACCTGATCTACGTC 
GCAGTGACCCGCGCGATGAAGATCCTTGCCATCAACAGCCTGGTGCTGTCGATCATGCAGCGGTACGTGGAC 
GACAGAAAACTGAAGGAGCAGATAGCTAGCTGTAAAAAATGA