ViewGene

Locus Name:
GeneID:
Location:

GeneID:773
TrivialName: PA14_47040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47040
PAO1 Ortholog Locus:PA1331
Sequence Length:1548
Protein Length:515
Start: 4190188
Stop: 4191735
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04720.1|AE004562_7 (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 515/515 (100%), Positives = 515/515 (100%)
Sequence:
ATGGAATGGATAGCTGACCCGACTGCCTGGCTCGGCCTGGCGACCCTGATCGTGCTGGAGATCGTCCTCGGC
ATCGACAACCTGGTGTTCATCGCGATCCTCGCCGACAAGCTGCCGCCGCACCTGCGCGACCGCGCCCGGGTC
CTCGGCCTGTCGCTGGCGCTGCTGATGCGCCTGGGCCTGCTGGCGAGCATCTCGTGGATGGTGACCCTCACC
GAGCCGCTGTTCGAGGTATTCGGCAAGAGCTTCTCCGGCCGCGACCTGATCATGCTGTTCGGTGGCGTGTTC
CTGCTGTTCAAGGCCACCATGGAGCTGCACGAACGCCTCGAAGGCCATGTCGCCCAGCACGCCGGCAACAAG
ACCTACGCGCTGTTCTGGCCGATCGTCGCGCAGATCGTGGTGCTCGACGCGGTGTTCTCGCTCGACGCGGTG
ATCACCGCAGTGGGCATGGTCGAGCACCTGGAAGTGATGATGATCGCGGTGATCGTCTCCATCGGCCTGATG
ATCGTCGCCAGCAAGCCGCTGACCCGCTTCGTCAATCGTCACCCGACGGTGATCATGCTGTGCCTGGGCTTC
CTGATGATGATCGGCTTCAGCCTGACCGCCGAGGGCCTGGGCTTCCATATCCCGAAAGGCTACCTGTACGCG
GCCATCGGCTTCTCGATCCTCATCGAGGTGTTCAACCAGGTCGCCCGCAAGCGCCGCAAGAAGAGCCTGCAG
GGCCACCGCCCGCTGCGCGCACGTACCGCCCATGCGGTGCTGCGCCTGCTCGGCGGCCAGCGCCTGGAGGCC
GACGAGGTCGGCGAGGAAGTCGCCGACCTGTTCGAGGAGGGCGACGACCAGGTGGTCTTCGACCGCCGCGAG
CGGGTGATGATCAGCGGTGTGCTGCAATTGGCCGAGAAGCCCATCCGCAGCCTGATGACGGTACGCGCCGAG
GTCGACTGCATCGACCTCGACAGCGGCCGCGAGGCGATCCGCGCGGCGCTGCTCGAATCGTCCTACTCGCGC
CTGCCACTGGTGCGCGACGGGCGCGTCGAGGAGCCGCTGGGCTACGTGCACAAGAAGGAACTGCTCAAGGAG
CTGCTCGCCGGCGCCCAGCCGGACCTGGAAAGCCTGGCCCGCCAGCCGCTCAACCTGTTGCAGGACTGTTCG
ATCCTCAATGCCCTGGAGCAGATGCGCGAGGCCTCGACCCACGTGGCCTTCGTGGTCAACGAGTTCGGCGAA
TTCATCGGCCTGCTGACCCTGACCGACATTCTCGAATCCATCGCCGGCGAGCTGCCCGACGCCAGCGAGATC
GACGGTCCGGACGTGGTCGAGGAGAACGACGGCTACCTGGTCAGCGGTGCCATGAACCTCAGCCAGGTGCGT
CGACGCGTGGGGTTCGACGCGCGCGCCACGGAGGACTACCAGACCCTCGCCGGGCTGGTGATGAGCCTGCTC
GACCGCCTGCCGGTGATCGGCGACCGCCTGCAGTGGCAGGACTGGGAACTGCGGGTGGTGGAAGTGGAAGAA
CGCCGGGTGACCCGGGTCCTGCTGCGCAGGGGCTGA
Translation:
MEWIADPTAWLGLATLIVLEIVLGIDNLVFIAILADKLPPHLRDRARVLGLSLALLMRLGLLASISWMVTLT
EPLFEVFGKSFSGRDLIMLFGGVFLLFKATMELHERLEGHVAQHAGNKTYALFWPIVAQIVVLDAVFSLDAV
ITAVGMVEHLEVMMIAVIVSIGLMIVASKPLTRFVNRHPTVIMLCLGFLMMIGFSLTAEGLGFHIPKGYLYA
AIGFSILIEVFNQVARKRRKKSLQGHRPLRARTAHAVLRLLGGQRLEADEVGEEVADLFEEGDDQVVFDRRE
RVMISGVLQLAEKPIRSLMTVRAEVDCIDLDSGREAIRAALLESSYSRLPLVRDGRVEEPLGYVHKKELLKE
LLAGAQPDLESLARQPLNLLQDCSILNALEQMREASTHVAFVVNEFGEFIGLLTLTDILESIAGELPDASEI
DGPDVVEENDGYLVSGAMNLSQVRRRVGFDARATEDYQTLAGLVMSLLDRLPVIGDRLQWQDWELRVVEVEE
RRVTRVLLRRG*
AnnotationID:782GeneID:773
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein, TerC family
Cell Localization:()
Synonyms:yegH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative transport protein
Functional Category Confidence Code:5
COGs:COG1253,COG0861,pfam03741
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69039.1|AE016536_7 (AE016786) CBS domain protein [Pseudomonas putida KT2440]
          Length = 523

 Score =  822 bits (2122), Expect = 0.0
 Identities = 419/512 (81%), Positives = 461/512 (90%)

>gb|AAO56039.1| (AE016864) membrane protein, TerC family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 522

 Score =  788 bits (2035), Expect = 0.0
 Identities = 397/514 (77%), Positives = 454/514 (88%)

>emb|CAC90350.1| (AJ414148) putative membrane protein [Yersinia pestis CO92]
          Length = 528

 Score =  517 bits (1331), Expect = e-146
 Identities = 280/515 (54%), Positives = 364/515 (70%), Gaps = 6/515 (1%)
Structural Features:
COG1253, TlyC, Hemolysins and related proteins containing CBS domains.
CD-Length = 429 residues,  98.1% aligned
Score =  292 bits (749), Expect = 5e-80
Identities = 118/422 (27%), Positives = 204/422 (48%), Gaps = 6/422 (1%)

COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues,  97.2% aligned
Score =  269 bits (689), Expect = 6e-73
Identities = 136/247 (55%), Positives = 168/247 (68%), Gaps = 4/247 (1%)

pfam03741, TerC, Integral membrane protein TerC family. 
CD-Length = 222 residues,  99.5% aligned
Score =  190 bits (483), Expect = 5e-49
Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 8/221 (3%)
Genomic Context:
Comment:
ReferenceID:1549
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18691
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37465
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:773_cdd.html
URL:
Homologs By Global Alignment
Gene ID:773

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1358 PA1331_tr translation of PA1331 515 99.99 99.99 0 2569.0
50010 gb|AAG04720.1|AE004562_7 (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 515 99.99 99.99 0 2569.0
50011 gb|AAN69039.1|AE016536_7 (AE016786) CBS domain protein [Pseudomonas putida KT2440] 523 80.11 88.14 8 2119.0
50012 gb|AAO56039.1| (AE016864) membrane protein, TerC family [Pseudomonas syringae pv. tomato str. DC3000] 522 76.05 86.97 7 2033.0
50013 gb|AAQ62048.1| (AE016925) probable transport membrane protein [Chromobacterium violaceum ATCC 12472] 529 54.06 70.13 16 1361.0
GC ORFID: 43775How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1331Glimmer Score:
Start: 763721Stop: 762174
Length: 1548
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1331 translation of PA1331Homolog Bit Score 994.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7466 (ORF: BLASTX 797.0), t_PA1331 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATGGATAGCTGACCCGACTGCCTGGCTCGGCCTGGCGACCCTGATCGTGCTGGAGATCGTCCTCGGC
ATCGACAACCTGGTGTTCATCGCGATCCTCGCCGACAAGCTGCCGCCGCACCTGCGCGACCGCGCCCGGGTC
CTCGGCCTGTCGCTGGCGCTGCTGATGCGCCTGGGCCTGCTGGCGAGCATCTCGTGGATGGTGACCCTCACC
GAGCCGCTGTTCGAGGTATTCGGCAAGAGCTTCTCCGGCCGCGACCTGATCATGCTGTTCGGTGGCGTGTTC
CTGCTGTTCAAGGCCACCATGGAGCTGCACGAACGCCTCGAAGGCCATGTCGCCCAGCACGCCGGCAACAAG
ACCTACGCGCTGTTCTGGCCGATCGTCGCGCAGATCGTGGTGCTCGACGCGGTGTTCTCGCTCGACGCGGTG
ATCACCGCAGTGGGCATGGTCGAGCACCTGGAAGTGATGATGATCGCGGTGATCGTCTCCATCGGCCTGATG
ATCGTCGCCAGCAAGCCGCTGACCCGCTTCGTCAATCGTCACCCGACGGTGATCATGCTGTGCCTGGGCTTC
CTGATGATGATCGGCTTCAGCCTGACCGCCGAGGGCCTGGGCTTCCATATCCCGAAAGGCTACCTGTACGCG
GCCATCGGCTTCTCGATCCTCATCGAGGTGTTCAACCAGGTCGCCCGCAAGCGCCGCAAGAAGAGCCTGCAG
GGCCACCGCCCGCTGCGCGCACGTACCGCCCATGCGGTGCTGCGCCTGCTCGGCGGCCAGCGCCTGGAGGCC
GACGAGGTCGGCGAGGAAGTCGCCGACCTGTTCGAGGAGGGCGACGACCAGGTGGTCTTCGACCGCCGCGAG
CGGGTGATGATCAGCGGTGTGCTGCAATTGGCCGAGAAGCCCATCCGCAGCCTGATGACGGTACGCGCCGAG
GTCGACTGCATCGACCTCGACAGCGGCCGCGAGGCGATCCGCGCGGCGCTGCTCGAATCGTCCTACTCGCGC
CTGCCACTGGTGCGCGACGGGCGCGTCGAGGAGCCGCTGGGCTACGTGCACAAGAAGGAACTGCTCAAGGAG
CTGCTCGCCGGCGCCCAGCCGGACCTGGAAAGCCTGGCCCGCCAGCCGCTCAACCTGTTGCAGGACTGTTCG
ATCCTCAATGCCCTGGAGCAGATGCGCGAGGCCTCGACCCACGTGGCCTTCGTGGTCAACGAGTTCGGCGAA
TTCATCGGCCTGCTGACCCTGACCGACATTCTCGAATCCATCGCCGGCGAGCTGCCCGACGCCAGCGAGATC
GACGGTCCGGACGTGGTCGAGGAGAACGACGGCTACCTGGTCAGCGGTGCCATGAACCTCAGCCAGGTGCGT
CGACGCGTGGGGTTCGACGCGCGCGCCACGGAGGACTACCAGACCCTCGCCGGGCTGGTGATGAGCCTGCTC
GACCGCCTGCCGGTGATCGGCGACCGCCTGCAGTGGCAGGACTGGGAACTGCGGGTGGTGGAAGTGGAAGAA
CGCCGGGTGACCCGGGTCCTGCTGCGCAGGGGCTGA